FvH4_5g37920

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
27977221 .. 27979285
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37920.t1

Sequence Viewer

Length: 1512 bp
ATGATGAAGGGGAGGAGGTCACCTGGTTCATCAACATCCCTCTTCATCGTTTTCTTGCTTTCTGCCATTCATCATGCAGTTTTGCATGTCTGCGCAAATAGCTATCATACCGTGAGGTTACCTCTAGTACACAGGTACTCTCCTGGTTTCATTACAGGAAGCGGTTTGATGAATAAAACCGATACAGAAATCGCGAAAGCGCTTCACCTCCATGACATAATCCGCCGGCAAAGGATTTCCCAAAGGAAGCATAGCGATGATCATCAAATCCCAAGGCGGAAGGACACAGAAACTAGCTCACCATATGCAATGCCGCTGCATTCGGGTTTTGATATCCTATCAGGGTTGTATTGGGTCGAAGTAAGAGTCGGAACACCTCCAAAGCCTTTCTTTTTGGTTGCAGATACAGGGAGCGACTTGACATGGGTGAGATGCCAATATGATCCGAAGTTGACAAAGGAGGCCAAAGAGAAGCTGGTAACCGAGACAAAGATACACCATCATGTAGATCCAAAGAAGCAATCACATCTTCTCAATACTAAAGGTAGGGTATTTCGTGCTGATCTATCATCAACCTTCAAACCTATTCCATGCTCCGATGGTATGTGCAACCGGGAGCTTGTACAGTTGCATGCTGTTCAAAACTGCCCAACTCCATCGTCGCCATGCAGATACCATTACACCTACTTGGGAGGGAATGGCGCAGTTGGTTTCTTTGGTCATGACACTATAACAATGCCCCTCCCAAATGGTAGCAGAACACACCTGCCTAATATGACAATTGGCTGCACACAGGACACCCAAAAATTAGACGAAGGTGATGGCATTATTGGTCTAGGGTTCAGTGACACCTCATTCCCCGATACAATAGTTAAGTCTAAGCTTGCTGCCAAGTTCTCATATTGCCTAATGAATCATAGGAGCAACTCGAGTGTGGCAAGTTATCTTACATTTGGTCCCAATAACCAAGCTGTTACCAGCCCAATGAGGTACACAAAGTTGGTTTTGAATGACTATAGGCAAATCAAGACCGGTTTTTATGGTGTAAATGTAGAGGGCATCTCAATTGGGGGAACATTATTGAAGATACCAAGTCAAATATGGGAAGAAATGTTGCGTGGTGGCGGTATAACGTTTGATTCAGGCTCAACCAACACATGGCTATCCTTACCAATTTACCAAGCTGTCATGGACGAACTGACAAAAGCCTTGTCAATATATAAGAAGGTCGATTTGAATGATAAAGGCATCCCATTTGAGTTCTGCTTCAATGATAAAGGATATAACGAGTCTTTGGTGCCAAGAGTTGCATTTCATTTTGCAGGAGGAGTTATATTTGATCCACCGGTGAGGAACTATGTTTTGGATGTGGCTCAGGGGGTCAAGTGTCTTGGGTTTGTTCCATCTTTCGATGGCGCGTCTATGATTGGCAACCAAATGCAACAAAACTATCTTTGGGAATATGATATGGGACGTGGTACTGTGGGTTTTGCTCCTTCCACCTGCACCTAG

Protein Analysis

504

Amino Acids

55.95

Weight (kDa)

8.88

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 117 - 319 2.4e-40 Xylanase inhibitor N-terminal
Asp PF00026 117 - 499 1.3e-13 Eukaryotic aspartyl protease
TAXi_C PF14541 347 - 498 9.1e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 774
Acc16I TGCGCA 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 774
AccB1I GGYRCC 1 cut(s) 1297
AccB7I CCANNNNNTGG 1 cut(s) 1158
AccII CGCG 2 cut(s) 194, 1418
AciI CCGC 5 cut(s) 162, 223, 277, 314, 1125
AclI AACGTT 1 cut(s) 1133
AclWI GGATC 3 cut(s) 437, 503, 1334
AfaI GTAC 5 cut(s) 129, 137, 624, 992, 1480
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 1158
AgeI ACCGGT 2 cut(s) 1031, 1345
AgsI TTSAA 6 cut(s) 580, 641, 1009, 1084, 1237, 1270
AjiI CACGTC 1 cut(s) 1475
AjnI CCWGG 2 cut(s) 22, 142
AjuI GAANNNNNNNTTGG 2 cut(s) 1346, 1378
AluBI AGCT 7 cut(s) 102, 297, 475, 619, 883, 971, 1184
AluI AGCT 7 cut(s) 102, 297, 475, 619, 883, 971, 1184
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 3 cut(s) 437, 503, 1334
Ama87I CYCGRG 1 cut(s) 928
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 3 cut(s) 316, 786, 887
ArsI GACNNNNNNTTYG 4 cut(s) 351, 383, 1196, 1228
AsiGI ACCGGT 2 cut(s) 1031, 1345
AspLEI GCGC 4 cut(s) 95, 202, 704, 1418
AspS9I GGNCC 1 cut(s) 956
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 6 cut(s) 12, 197, 291, 439, 830, 1360
AvaI CYCGRG 1 cut(s) 928
AvaII GGWCC 1 cut(s) 956
BaeI ACNNNNGTAYC 2 cut(s) 855, 888
BanI GGYRCC 1 cut(s) 1297
BbvI GCAGC 3 cut(s) 303, 773, 874
BccI CCATC 6 cut(s) 507, 593, 664, 815, 1406, 1411
BciT130I CCWGG 2 cut(s) 24, 144
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 4 cut(s) 125, 294, 836, 1510
BfmI CTRYAG 1 cut(s) 1015
BfoI RGCGCY 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 774
BisI GCNGC 4 cut(s) 314, 317, 787, 888
BlsI GCNGC 4 cut(s) 315, 318, 788, 889
Bme1390I CCNGG 3 cut(s) 24, 144, 614
Bme18I GGWCC 1 cut(s) 956
BmeT110I CYCGRG 1 cut(s) 928
BmgBI CACGTC 1 cut(s) 1475
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 2 cut(s) 958, 1299
BmrFI CCNGG 3 cut(s) 24, 144, 614
BmsI GCATC 3 cut(s) 422, 1068, 1257
BplI GAGNNNNNCTC 4 cut(s) 106, 138, 1046, 1078
Bpu10I CCTNAGC 1 cut(s) 1374
BpuMI CCSGG 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 2 cut(s) 1031, 1345
Bsc4I CCNNNNNNNGG 1 cut(s) 1158
Bse118I RCCGGY 3 cut(s) 225, 1031, 1345
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 2 cut(s) 24, 144
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 3 cut(s) 35, 1248, 1372
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 1158
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 1388
BseRI GAGGAG 2 cut(s) 28, 1341
BseXI GCAGC 3 cut(s) 303, 773, 874
BsgI GTGCAG 2 cut(s) 772, 1489
Bsh1236I CGCG 2 cut(s) 194, 1418
BshFI GGCC 1 cut(s) 464
BshNI GGYRCC 1 cut(s) 1297
BshTI ACCGGT 2 cut(s) 1031, 1345
BsiHKCI CYCGRG 1 cut(s) 928
BsiSI CCGG 4 cut(s) 226, 613, 1032, 1346
BslFI GGGAC 2 cut(s) 942, 1485
BslI CCNNNNNNNGG 1 cut(s) 1158
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 2 cut(s) 942, 1485
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 928
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 5 cut(s) 259, 442, 508, 562, 1339
Bsp68I TCGCGA 1 cut(s) 194
BspACI CCGC 5 cut(s) 162, 223, 277, 314, 1125
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 1 cut(s) 1387
BspFNI CGCG 2 cut(s) 194, 1418
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 2 cut(s) 958, 1299
BspMI ACCTGC 1 cut(s) 774
BspPI GGATC 3 cut(s) 437, 503, 1334
BspT107I GGYRCC 1 cut(s) 1297
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 3 cut(s) 225, 1031, 1345
BsrGI TGTACA 1 cut(s) 622
BssAI RCCGGY 3 cut(s) 225, 1031, 1345
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 5 cut(s) 259, 442, 508, 562, 1339
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 24, 144
Bst4CI ACNGT 3 cut(s) 112, 627, 1483
Bst6I CTCTTC 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 622
BstC8I GCNNGC 3 cut(s) 227, 633, 885
BstDEI CTNAG 2 cut(s) 879, 1374
BstEII GGTNACC 3 cut(s) 18, 117, 478
BstF5I GGATG 3 cut(s) 35, 1248, 1372
BstFNI CGCG 2 cut(s) 194, 1418
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 4 cut(s) 95, 202, 704, 1418
BstKTI GATC 5 cut(s) 262, 445, 511, 565, 1342
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 5 cut(s) 259, 442, 508, 562, 1339
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 2 cut(s) 24, 144
BstNSI RCATGY 2 cut(s) 89, 635
BstPI GGTNACC 3 cut(s) 18, 117, 478
BstSCI CCNGG 3 cut(s) 22, 142, 612
BstSFI CTRYAG 1 cut(s) 1015
BstUI CGCG 2 cut(s) 194, 1418
BstV1I GCAGC 3 cut(s) 303, 773, 874
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 1 cut(s) 464
BtgZI GCGATG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 1475
BtsCI GGATG 3 cut(s) 35, 1248, 1372
BtsIMutI CAGTG 1 cut(s) 850
BtuMI TCGCGA 1 cut(s) 194
BveI ACCTGC 1 cut(s) 774
Cac8I GCNNGC 3 cut(s) 227, 633, 885
CciI TCATGA 1 cut(s) 721
CfoI GCGC 4 cut(s) 95, 202, 704, 1418
Cfr10I RCCGGY 3 cut(s) 225, 1031, 1345
Cfr13I GGNCC 1 cut(s) 956
CseI GACGC 1 cut(s) 1407
CsiI ACCWGGT 1 cut(s) 22
Csp6I GTAC 5 cut(s) 128, 136, 623, 991, 1479
CspAI ACCGGT 2 cut(s) 1031, 1345
CviQI GTAC 5 cut(s) 128, 136, 623, 991, 1479
DdeI CTNAG 2 cut(s) 879, 1374
DpnI GATC 5 cut(s) 261, 444, 510, 564, 1341
DpnII GATC 5 cut(s) 259, 442, 508, 562, 1339
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 2 cut(s) 212, 292
Eco130I CCWWGG 1 cut(s) 272
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 956
Eco47III AGCGCT 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 928
Eco91I GGTNACC 3 cut(s) 18, 117, 478
EcoO65I GGTNACC 3 cut(s) 18, 117, 478
EcoRII CCWGG 2 cut(s) 22, 142
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 2 cut(s) 942, 1485
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 314, 317, 787, 888
FokI GGATG 3 cut(s) 22, 1235, 1379
Fsp4HI GCNGC 4 cut(s) 314, 317, 787, 888
FspBI CTAG 4 cut(s) 125, 294, 836, 1510
FspI TGCGCA 1 cut(s) 94
GlaI GCGC 4 cut(s) 94, 201, 703, 1417
GluI GCNGC 4 cut(s) 314, 317, 787, 888
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 1 cut(s) 464
HapII CCGG 4 cut(s) 226, 613, 1032, 1346
HgaI GACGC 1 cut(s) 1407
HhaI GCGC 4 cut(s) 95, 202, 704, 1418
Hin6I GCGC 4 cut(s) 93, 200, 702, 1416
HinP1I GCGC 4 cut(s) 93, 200, 702, 1416
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 4 cut(s) 366, 913, 1139, 1289
HpaII CCGG 4 cut(s) 226, 613, 1032, 1346
HphI GGTGA 6 cut(s) 12, 197, 291, 439, 830, 1360
Hpy166II GTNNAC 3 cut(s) 130, 453, 993
Hpy188I TCNGA 3 cut(s) 371, 447, 598
Hpy188III TCNNGA 3 cut(s) 193, 722, 1027
Hpy8I GTNNAC 3 cut(s) 130, 453, 993
Hpy99I CGWCG 1 cut(s) 664
HpyAV CCTTC 5 cut(s) 274, 586, 809, 1219, 1506
HpyCH4III ACNGT 3 cut(s) 112, 627, 1483
HpyCH4IV ACGT 2 cut(s) 1133, 1474
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 879, 1374
HpySE526I ACGT 2 cut(s) 1133, 1474
HspAI GCGC 4 cut(s) 93, 200, 702, 1416
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 5 cut(s) 259, 442, 508, 562, 1339
LmnI GCTCC 5 cut(s) 411, 599, 616, 921, 1498
Lsp1109I GCAGC 3 cut(s) 303, 773, 874
LweI GCATC 3 cut(s) 422, 1068, 1257
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 4 cut(s) 125, 294, 836, 1510
MaeII ACGT 2 cut(s) 1133, 1474
MaeIII GTNAC 5 cut(s) 18, 117, 478, 845, 973
MalI GATC 5 cut(s) 261, 444, 510, 564, 1341
MboI GATC 5 cut(s) 259, 442, 508, 562, 1339
MboII GAAGA 4 cut(s) 34, 521, 1096, 1118
MfeI CAATTG 2 cut(s) 780, 1065
MflI RGATCY 1 cut(s) 508
MluCI AATT 4 cut(s) 780, 806, 1065, 1173
MlyI GAGTC 2 cut(s) 375, 1298
MmeI TCCRAC 1 cut(s) 349
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 1 cut(s) 873
MslI CAYNNNNRTG 3 cut(s) 210, 255, 501
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 4 cut(s) 226, 613, 1032, 1346
MspR9I CCNGG 3 cut(s) 24, 144, 614
MunI CAATTG 2 cut(s) 780, 1065
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 2 cut(s) 24, 144
MvnI CGCG 2 cut(s) 194, 1418
MwoI GCNNNNNNNGC 1 cut(s) 99
NaeI GCCGGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 614
NdeI CATATG 1 cut(s) 304
NdeII GATC 5 cut(s) 259, 442, 508, 562, 1339
NgoMIV GCCGGC 1 cut(s) 225
NlaIV GGNNCC 2 cut(s) 958, 1299
NmuCI GTSAC 2 cut(s) 18, 845
NruI TCGCGA 1 cut(s) 194
NsbI TGCGCA 1 cut(s) 94
NspI RCATGY 2 cut(s) 89, 635
PaeI GCATGC 1 cut(s) 635
PaeR7I CTCGAG 1 cut(s) 928
PagI TCATGA 1 cut(s) 721
PaqCI CACCTGC 1 cut(s) 774
PctI GAATGC 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 913, 1139
PflMI CCANNNNNTGG 1 cut(s) 1158
PinAI ACCGGT 2 cut(s) 1031, 1345
PkrI GCNGC 4 cut(s) 315, 318, 788, 889
PleI GAGTC 2 cut(s) 374, 1297
PpsI GAGTC 2 cut(s) 374, 1297
Psp1406I AACGTT 1 cut(s) 1133
Psp6I CCWGG 2 cut(s) 22, 142
PspEI GGTNACC 3 cut(s) 18, 117, 478
PspGI CCWGG 2 cut(s) 22, 142
PspN4I GGNNCC 2 cut(s) 958, 1299
PspPI GGNCC 1 cut(s) 956
PspXI VCTCGAGB 1 cut(s) 928
PsuI RGATCY 1 cut(s) 508
RruI TCGCGA 1 cut(s) 194
RsaI GTAC 5 cut(s) 129, 137, 624, 992, 1480
RsaNI GTAC 5 cut(s) 128, 136, 623, 991, 1479
RseI CAYNNNNRTG 3 cut(s) 210, 255, 501
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 4 cut(s) 314, 317, 787, 888
Sau3AI GATC 5 cut(s) 259, 442, 508, 562, 1339
Sau96I GGNCC 1 cut(s) 956
SchI GAGTC 2 cut(s) 375, 1298
ScrFI CCNGG 3 cut(s) 24, 144, 614
SexAI ACCWGGT 1 cut(s) 22
SfaNI GCATC 3 cut(s) 422, 1068, 1257
SfcI CTRYAG 1 cut(s) 1015
Sfr274I CTCGAG 1 cut(s) 928
SgrAI CRCCGGYG 1 cut(s) 1345
SinI GGWCC 1 cut(s) 956
SlaI CTCGAG 1 cut(s) 928
SmiMI CAYNNNNRTG 3 cut(s) 210, 255, 501
SmlI CTYRAG 1 cut(s) 928
SmoI CTYRAG 1 cut(s) 928
SphI GCATGC 1 cut(s) 635
Sse9I AATT 4 cut(s) 780, 806, 1065, 1173
SsiI CCGC 5 cut(s) 162, 223, 277, 314, 1125
SspMI CTAG 4 cut(s) 125, 294, 836, 1510
StyD4I CCNGG 3 cut(s) 22, 142, 612
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 3 cut(s) 112, 627, 1483
TaiI ACGT 2 cut(s) 1136, 1477
TaqI TCGA 4 cut(s) 357, 929, 1230, 1410
TasI AATT 4 cut(s) 780, 806, 1065, 1173
TatI WGTACW 2 cut(s) 127, 622
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 2 cut(s) 913, 1139
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 2 cut(s) 18, 845
TseI GCWGC 3 cut(s) 316, 786, 887
Tsp45I GTSAC 2 cut(s) 18, 845
TspDTI ATGAA 8 cut(s) 18, 20, 34, 59, 139, 185, 926, 1304
TspRI CASTG 1 cut(s) 850
Van91I CCANNNNNTGG 1 cut(s) 1158
VpaK11BI GGWCC 1 cut(s) 956
XceI RCATGY 2 cut(s) 89, 635
XcmI CCANNNNNNNNNTGG 2 cut(s) 472, 1098
XhoI CTCGAG 1 cut(s) 928
XspI CTAG 4 cut(s) 125, 294, 836, 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.