Rh5BG161800

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
16841342 .. 16844318
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG161800.1

Sequence Viewer

Length: 1461 bp
ATGAAGGGGAGGCCAAACGCATTCCTCTTCATCATCTTCTTGCTCTCTGCCCTTCACGGGATTTTCTCTGTTCATTCATTTCTCAATGAATTGAAACAAGACGAACCCATGAGATTAGAGCTCATTCACAGGCACTCTCCGAAGCTCAATGGGCATGGTTTGCGTGACGAAATGCCGAAAACGCAGCTAGAACTCATTGAAGAGCTCCACCGCCACGACCTCATTCGCCAACAAATGATCTCCCGCAAGAGGCAACACCACCATCATCACATTCAAACTGGCCTAAGGAGAAATGCATTGGAAACAGCTTCCATTGCAATGCCATTGAGTTCGGGTTGGGATTTCGGTGTCGGGCAGTACCTTGTTCAGGTTAAAGTGGGAACACCTTCACAGAGATTCCTGTTGATTGCAGACACAGGGAGTGACTTGACATGGATGAAGTGCAAGTACCGGTGCGGTGAGAAATGTGGGTTGAAAAGAGCAAAGATGAAGAAGAACAAGAAGAAGGTGTTTCGTGCCACTCAATCTTCAACCTTCAAAACTATCACTTGCTCTTCTGAGATGTGCAAGTTCGAGCTTGACTTCTCTCTCACAATATGTCCAACCCCATTGAGCCGTTGCAAATATGATTATAGGTACGCAGAAAAATCTGGTGCATTGGGCTTCTTTGCGAATGAGACTGTAAGAGTACCCCTTACGAATGGTAGGAGCGCGAAGCTGAATGATGTGCTAATTGGCTGCACAGAGTCCATCGAGGGCCCTAAAGAGGCAAGCATCTGGGGAGGTGATGGGATATTGGGTCTAGGGTTCAGCAAGCACTCATTCGTTGCGAAAGCTGCTTCAAACTTGGGTGACAAGTTTTCCTATTGCCTAATTGATCACATGAGCAACAAGAATGTGTCAAGCTATCTCACATTTGGTGGAAGTGCTGAACCCGCACTGCGAAACAGCATGAGTTACACAAAGCTTGCTTTGGGTGGCCCTAAAATTGGCCCATTTTACGCTGTAAACTTGGTGGGGATATCAGTCAGGGGCAAAATGCTAAAGATACCAAATGAAGTGTGGGTTGAAAACCTTGGTGGTGGAACAATTGTTGATTCAGGCACAAGCCTCACGTTTCTAACCTCACCAGCTTACAAACCTGTCATGGCTGAATTGACAATGGCTTTGTCCAAGTACGAAAAAATACCGTTGGATGCATTTGAGTTCTGCTTCAATTCCACTGGTTATGATGAGTCTTCAGTGCCGAGATTTGCAGTTCATTTTGCAGATGGAGCTAAATTTGAGCCCCCAGTGAAGAGCTATGTTATTGATGTTGCTGTACAGACAAAGTGTCTCGGGTTTATGTCAGCTATATTTCCTGGCACCATTGTTATTGGCAACATAATGCAACAAAATTATTTGTGGGAATTCGATTTGCGGGGAGGTACATTGGGTTTTGCTCCTTCAAGCTGCACCTAG

Protein Analysis

486

Amino Acids

53.96

Weight (kDa)

9.19

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 119 - 482 8.4e-21 Eukaryotic aspartyl protease
TAXi_N PF14543 120 - 308 5.8e-44 Xylanase inhibitor N-terminal
TAXi_C PF14541 334 - 481 1.9e-33 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1364
AccII CGCG 1 cut(s) 713
AciI CCGC 5 cut(s) 211, 244, 456, 936, 1420
AcsI RAATTY 2 cut(s) 1280, 1409
AcuI CTGAAG 1 cut(s) 1224
AfaI GTAC 7 cut(s) 359, 449, 638, 690, 1178, 1323, 1429
AfiI CCNNNNNNNGG 5 cut(s) 57, 249, 367, 766, 989
AgeI ACCGGT 1 cut(s) 450
AhdI GACNNNNNGTC 1 cut(s) 1332
AjnI CCWGG 1 cut(s) 1360
Alw21I GWGCWC 2 cut(s) 123, 207
Alw26I GTCTC 2 cut(s) 671, 1340
Ama87I CYCGRG 1 cut(s) 1337
AoxI GGCC 5 cut(s) 11, 280, 757, 979, 991
ApaI GGGCCC 1 cut(s) 761
ApeKI GCWGC 4 cut(s) 184, 738, 836, 1452
ApoI RAATTY 2 cut(s) 1280, 1409
ArsI GACNNNNNNTTYG 2 cut(s) 1150, 1182
AsiGI ACCGGT 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 385
AspLEI GCGC 1 cut(s) 713
AspS9I GGNCC 4 cut(s) 757, 758, 980, 992
AsuHPI GGTGA 4 cut(s) 470, 797, 863, 1119
AvaI CYCGRG 1 cut(s) 1337
AxyI CCTNAGG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 1364
BanII GRGCYC 4 cut(s) 123, 207, 761, 1290
BarI GAAGNNNNNNTAC 2 cut(s) 431, 463
BbsI GAAGAC 1 cut(s) 1230
Bbv12I GWGCWC 2 cut(s) 123, 207
BbvI GCAGC 4 cut(s) 196, 725, 823, 1439
BccI CCATC 4 cut(s) 270, 758, 782, 1265
BceAI ACGGC 1 cut(s) 600
BciT130I CCWGG 1 cut(s) 1362
BclI TGATCA 1 cut(s) 877
BcoDI GTCTC 2 cut(s) 671, 1340
BfaI CTAG 3 cut(s) 188, 803, 1459
BisI GCNGC 4 cut(s) 185, 739, 837, 1453
BlsI GCNGC 4 cut(s) 186, 740, 838, 1454
Bme1390I CCNGG 1 cut(s) 1362
BmeRI GACNNNNNGTC 1 cut(s) 1332
BmeT110I CYCGRG 1 cut(s) 1337
BmgT120I GGNCC 4 cut(s) 757, 758, 980, 992
BmiI GGNNCC 2 cut(s) 759, 1366
BmrFI CCNGG 1 cut(s) 1362
BmrI ACTGGG 1 cut(s) 1286
BmsI GCATC 2 cut(s) 783, 1186
BmuI ACTGGG 1 cut(s) 1286
BpiI GAAGAC 1 cut(s) 1230
BsaJI CCNNGG 1 cut(s) 1075
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 249, 367, 766, 989
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 3 cut(s) 283, 1228, 1292
Bse21I CCTNAGG 1 cut(s) 284
Bse3DI GCAATG 2 cut(s) 312, 324
BseBI CCWGG 1 cut(s) 1362
BseDI CCNNGG 1 cut(s) 1075
BseGI GGATG 2 cut(s) 441, 1201
BseLI CCNNNNNNNGG 5 cut(s) 57, 249, 367, 766, 989
BseMI GCAATG 2 cut(s) 312, 324
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 3 cut(s) 283, 1228, 1292
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 4 cut(s) 196, 725, 823, 1439
BsgI GTGCAG 2 cut(s) 724, 1438
Bsh1236I CGCG 1 cut(s) 713
BshFI GGCC 5 cut(s) 13, 282, 759, 981, 993
BshNI GGYRCC 1 cut(s) 1364
BshTI ACCGGT 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 123, 207
BsiHKCI CYCGRG 1 cut(s) 1337
BsiSI CCGG 1 cut(s) 451
BslI CCNNNNNNNGG 5 cut(s) 57, 249, 367, 766, 989
BsmAI GTCTC 2 cut(s) 671, 1340
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 5 cut(s) 13, 282, 759, 981, 993
BsoBI CYCGRG 1 cut(s) 1337
Bsp120I GGGCCC 1 cut(s) 757
Bsp1286I GDGCHC 4 cut(s) 123, 207, 761, 1290
Bsp1407I TGTACA 1 cut(s) 1321
Bsp143I GATC 2 cut(s) 237, 877
BspACI CCGC 5 cut(s) 211, 244, 456, 936, 1420
BspANI GGCC 5 cut(s) 13, 282, 759, 981, 993
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 1 cut(s) 713
BspLI GGNNCC 2 cut(s) 759, 1366
BspQI GCTCTTC 3 cut(s) 195, 559, 1292
BspT107I GGYRCC 1 cut(s) 1364
BsrDI GCAATG 2 cut(s) 312, 324
BsrFI RCCGGY 1 cut(s) 450
BsrGI TGTACA 1 cut(s) 1321
BsrI ACTGG 3 cut(s) 283, 1228, 1292
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 1075
BssMI GATC 2 cut(s) 237, 877
BssT1I CCWWGG 1 cut(s) 1075
Bst2UI CCWGG 1 cut(s) 1362
Bst4CI ACNGT 2 cut(s) 682, 1191
Bst6I CTCTTC 4 cut(s) 32, 195, 559, 1292
BstAPI GCANNNNNTGC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 1321
BstC8I GCNNGC 3 cut(s) 772, 815, 969
BstDEI CTNAG 2 cut(s) 284, 558
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 2 cut(s) 441, 1201
BstFNI CGCG 1 cut(s) 713
BstHHI GCGC 1 cut(s) 713
BstKTI GATC 2 cut(s) 240, 880
BstMAI GTCTC 2 cut(s) 671, 1340
BstMBI GATC 2 cut(s) 237, 877
BstMWI GCNNNNNNNGC 7 cut(s) 151, 160, 181, 314, 836, 935, 1274
BstNI CCWGG 1 cut(s) 1362
BstSCI CCNGG 1 cut(s) 1360
BstSLI GKGCMC 1 cut(s) 761
BstUI CGCG 1 cut(s) 713
BstV1I GCAGC 4 cut(s) 196, 725, 823, 1439
BstV2I GAAGAC 1 cut(s) 1230
Bsu36I CCTNAGG 1 cut(s) 284
BsuRI GGCC 5 cut(s) 13, 282, 759, 981, 993
BtsCI GGATG 2 cut(s) 441, 1201
BtsI GCAGTG 1 cut(s) 938
BtsIMutI CAGTG 4 cut(s) 938, 1221, 1248, 1299
Cac8I GCNNGC 3 cut(s) 772, 815, 969
CfoI GCGC 1 cut(s) 713
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 4 cut(s) 757, 758, 980, 992
Csp6I GTAC 7 cut(s) 358, 448, 637, 689, 1177, 1322, 1428
CspAI ACCGGT 1 cut(s) 450
CviAII CATG 6 cut(s) 109, 155, 432, 883, 952, 1147
CviQI GTAC 7 cut(s) 358, 448, 637, 689, 1177, 1322, 1428
DdeI CTNAG 2 cut(s) 284, 558
DpnI GATC 2 cut(s) 239, 879
DpnII GATC 2 cut(s) 237, 877
DriI GACNNNNNGTC 1 cut(s) 1332
Eam1104I CTCTTC 4 cut(s) 32, 195, 559, 1292
Eam1105I GACNNNNNGTC 1 cut(s) 1332
EarI CTCTTC 4 cut(s) 32, 195, 559, 1292
Ecl136II GAGCTC 2 cut(s) 121, 205
Eco130I CCWWGG 1 cut(s) 1075
Eco24I GRGCYC 4 cut(s) 123, 207, 761, 1290
Eco32I GATATC 1 cut(s) 1023
Eco53kI GAGCTC 2 cut(s) 121, 205
Eco57I CTGAAG 1 cut(s) 1224
Eco81I CCTNAGG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 1337
EcoICRI GAGCTC 2 cut(s) 121, 205
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO109I RGGNCCY 2 cut(s) 757, 758
EcoRI GAATTC 1 cut(s) 1409
EcoRII CCWGG 1 cut(s) 1360
EcoRV GATATC 1 cut(s) 1023
EcoT14I CCWWGG 1 cut(s) 1075
EcoT22I ATGCAT 2 cut(s) 298, 1201
EcoT38I GRGCYC 4 cut(s) 123, 207, 761, 1290
ErhI CCWWGG 1 cut(s) 1075
FaeI CATG 6 cut(s) 112, 158, 435, 886, 955, 1150
FatI CATG 6 cut(s) 108, 154, 431, 882, 951, 1146
FauI CCCGC 3 cut(s) 251, 943, 1413
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 4 cut(s) 185, 739, 837, 1453
FokI GGATG 2 cut(s) 448, 1208
FriOI GRGCYC 4 cut(s) 123, 207, 761, 1290
Fsp4HI GCNGC 4 cut(s) 185, 739, 837, 1453
FspBI CTAG 3 cut(s) 188, 803, 1459
GlaI GCGC 1 cut(s) 712
GluI GCNGC 4 cut(s) 185, 739, 837, 1453
HaeIII GGCC 5 cut(s) 13, 282, 759, 981, 993
HapII CCGG 1 cut(s) 451
HhaI GCGC 1 cut(s) 713
Hin1II CATG 6 cut(s) 112, 158, 435, 886, 955, 1150
Hin6I GCGC 1 cut(s) 711
HinP1I GCGC 1 cut(s) 711
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 4 cut(s) 396, 746, 1097, 1235
HpaII CCGG 1 cut(s) 451
HphI GGTGA 4 cut(s) 470, 797, 863, 1119
Hpy166II GTNNAC 1 cut(s) 1009
Hpy188I TCNGA 2 cut(s) 141, 559
Hpy8I GTNNAC 1 cut(s) 1009
HpyAV CCTTC 5 cut(s) 62, 396, 499, 544, 1455
HpyCH4III ACNGT 2 cut(s) 682, 1191
HpyCH4IV ACGT 1 cut(s) 1115
HpyF10VI GCNNNNNNNGC 7 cut(s) 151, 160, 181, 314, 836, 935, 1274
HpyF3I CTNAG 2 cut(s) 284, 558
HpySE526I ACGT 1 cut(s) 1115
Hsp92II CATG 6 cut(s) 112, 158, 435, 886, 955, 1150
HspAI GCGC 1 cut(s) 711
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 2 cut(s) 237, 877
LguI GCTCTTC 3 cut(s) 195, 559, 1292
LmnI GCTCC 4 cut(s) 210, 708, 1274, 1447
Lsp1109I GCAGC 4 cut(s) 196, 725, 823, 1439
LweI GCATC 2 cut(s) 783, 1186
MaeI CTAG 3 cut(s) 188, 803, 1459
MaeII ACGT 1 cut(s) 1115
MaeIII GTNAC 4 cut(s) 164, 422, 851, 956
MalI GATC 2 cut(s) 239, 879
MboI GATC 2 cut(s) 237, 877
MfeI CAATTG 1 cut(s) 1089
MhlI GDGCHC 4 cut(s) 123, 207, 761, 1290
MlyI GAGTC 2 cut(s) 755, 1244
MmeI TCCRAC 2 cut(s) 626, 1173
Mph1103I ATGCAT 2 cut(s) 298, 1201
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 1362
MunI CAATTG 1 cut(s) 1089
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 1 cut(s) 1362
MvnI CGCG 1 cut(s) 713
MwoI GCNNNNNNNGC 7 cut(s) 151, 160, 181, 314, 836, 935, 1274
NdeII GATC 2 cut(s) 237, 877
NlaIII CATG 6 cut(s) 112, 158, 435, 886, 955, 1150
NlaIV GGNNCC 2 cut(s) 759, 1366
NmeAIII GCCGAG 1 cut(s) 1272
NmuCI GTSAC 3 cut(s) 164, 422, 851
NsiI ATGCAT 2 cut(s) 298, 1201
PciSI GCTCTTC 3 cut(s) 195, 559, 1292
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 385
PfeI GAWTC 2 cut(s) 396, 1097
PinAI ACCGGT 1 cut(s) 450
PkrI GCNGC 4 cut(s) 186, 740, 838, 1454
PleI GAGTC 2 cut(s) 754, 1243
PpsI GAGTC 2 cut(s) 754, 1243
Psp124BI GAGCTC 2 cut(s) 123, 207
Psp6I CCWGG 1 cut(s) 1360
PspGI CCWGG 1 cut(s) 1360
PspN4I GGNNCC 2 cut(s) 759, 1366
PspOMI GGGCCC 1 cut(s) 757
PspPI GGNCC 4 cut(s) 757, 758, 980, 992
RsaI GTAC 7 cut(s) 359, 449, 638, 690, 1178, 1323, 1429
RsaNI GTAC 7 cut(s) 358, 448, 637, 689, 1177, 1322, 1428
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 2 cut(s) 123, 207
SapI GCTCTTC 3 cut(s) 195, 559, 1292
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 4 cut(s) 185, 739, 837, 1453
Sau3AI GATC 2 cut(s) 237, 877
Sau96I GGNCC 4 cut(s) 757, 758, 980, 992
SchI GAGTC 2 cut(s) 755, 1244
ScrFI CCNGG 1 cut(s) 1362
SduI GDGCHC 4 cut(s) 123, 207, 761, 1290
SfaNI GCATC 2 cut(s) 783, 1186
SmiMI CAYNNNNRTG 1 cut(s) 317
SsiI CCGC 5 cut(s) 211, 244, 456, 936, 1420
SspMI CTAG 3 cut(s) 188, 803, 1459
SstI GAGCTC 2 cut(s) 123, 207
StyD4I CCNGG 1 cut(s) 1360
StyI CCWWGG 1 cut(s) 1075
TaaI ACNGT 2 cut(s) 682, 1191
TaiI ACGT 1 cut(s) 1118
TaqI TCGA 3 cut(s) 573, 753, 1413
TatI WGTACW 1 cut(s) 1321
TfiI GAWTC 2 cut(s) 396, 1097
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 4 cut(s) 945, 1228, 1248, 1299
TseFI GTSAC 3 cut(s) 164, 422, 851
TseI GCWGC 4 cut(s) 184, 738, 836, 1452
Tsp45I GTSAC 3 cut(s) 164, 422, 851
TspDTI ATGAA 9 cut(s) 17, 19, 62, 66, 102, 452, 503, 1071, 1250
TspRI CASTG 4 cut(s) 945, 1228, 1248, 1299
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 2 cut(s) 1280, 1409
XcmI CCANNNNNNNNNTGG 1 cut(s) 1059
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 3 cut(s) 188, 803, 1459
Zsp2I ATGCAT 2 cut(s) 298, 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.