Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005873

Physical Location & Seq

Genomic Coordinates Reverse (-)

36181571 .. 36192960

Gene Structure 11390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3663 bp

ATGAATAGAGGAGAACCACAGATGAGTCGTACCCATTTGGGCAATGGTGGTGGTGCTGCTGCTGACACCACGCCTTTCAAACTTGGTTTATTGGAGCATATTACAGCACTCGACAATTTCTCAACCCCAAGTGAAGTTCTCAGCTCACATTTCCTTTTCTCCTTACCAACTCAAAAACCTCCAATGGCTACTAGCTCAATGGCCTTTCCGATCCAGCATGTTCAAAGATTAGAGAGTGCACAAGTTCAAAAGGCTTGGCATGCCCTTTCCAATCTTCAGATCTCTTCTAGGAGCTACACAAGACCTGGAAAAACTGTCCAACTTAAAAATGCTAGCACTGAGTTTACTCATGATGCGGGAAGAACTACAGTTGTAAGCTCATGTGACATTAATAAAAGTAGTGGCCATATGCAAACACATCAATACATCGATGAAAGCAATGCCAGGTTAAGTGAAGCTGCAAGCTGTCTGCGCAGTGGGTTTCGGTCAAGTAACTACAATGTTGCAGATGCAGGAAAAAGTCTTCGGGGGCATAGTCAGGTCACAGCATCGCTGGTCAAGAATTCTCATTCTCAGGTGTCTGGTGGTTCATTTAGCAATAATAGTGTTCATACCAGCCAAGCGAAAGAATGTTCGAACAATTTCGTGAATGAGATGGATGCTGGTGATGATGACGACATACTTGAGAATATTGATGTTGACCACATAGTGGAACAGTACCAATCAAGTTGCACACCTAAACCATCAATTTCCAAGCTTCCACCCCTTACTCCATCTATACAAAAAGATAATACTATGAGACAAGAATCGACTTGTTTGCCACCAGAATTGTGTACAAATTGCGTTCATGGATTTAAGATAGGACTTTGCCCAGAAGCTGCAAATCATTTGCAAGAAATGAAGGACATGCTAATTGCCATATCAAATGAACTGCTTGATGATGTCAATGAACTCAGTCCAAAGCAAATAGAAAAGCTTCGCCAAGATAGGTTGCAGCTCAATAAGCAGATTCAGCCACTTGAGAGTTATCTCTGTTCCAACTCATTGGATGAGGAAAGACGGAAGTCAAATTTTTCTGCATCCACAACAACTCCTGGGCATTTCCAATATGAAACACCTCAAGCAGCTGCATTCAGGAATGACCCAGTGAGATTTGATTCAGAGGTTCATCTACATAATGAGGCAGGAGGATATGCAGAGTGGAATTCATCATCAGTTTCATCCTCTTCTACGGATAAGTTTGGTTTCTCTTCTTTTCCTGTTGAGAGAGAACCTTACATCCCAAAGTTTGTTGAAGTTAACTATACTGAAGGTTCAAATGACAAGAAGTGGAGGGATGGTCCTTTCCCGTGGACTAAAGAACTGGAGGCTAATAATAAGAGAGTGTTTGGTAACCACTCTTTCCGCCTCAACCAAAGAGAGGTCATTAATGCTACAATGAGTGGCCATGATGTTTTCGTTTTAATGCCAACTGGAGGGGGTAAGAGCCTGACATATCAGCTCCCTGCTGTAGTTTGTCCAGGCTTAACTTTGGTAATCTCTCCCCTTGTATCTCTTATTCAAGATCAAATAATGCATTTGTTTCAGGCAAATATTCCTGCTGCTTACCTAAGTGCCAATATGGAGTGGAGTGAACAACAGGAGATTCTTAGAGCACTGAGTTCTGAATATTGTAAATACAAGCTGTTATATGTCACCCCTGAAAAAGTTGCCAAAAGTGATTTTCTGTTGCGGCAATTGGAGAGTTTAAATGCTCGTCAGTTGCTTACTAGGATTGTAATTGATGAAGCTCATTGTGTGAGTCAGTGGGGGCATGATTTCAGACCAGATTATCAGGCTCTTGGTATCTTAAAGAAGAAGTTCCCAGATACTCCAGTGTTGGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCTCTTGGTCTTGTAAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAATCTATGGTATTCAGTTATTCCCAAGACAAAGAAATGCATAGAAGATATTGACAAGTTCATTAAAGAAAATCACTATGATGAAAGTGGAATAATATATTGTCTGTCAAGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAAGCAGCATTTTATCATGGTAGTATGGATCCTGCTCAACGTGCCTTTGTCCAGAAGCAGTGGAGTAAAGATGAAGTCAACATTATCTGTGCTACAGTGGCATTTGGAATGGGCATAAACAAGCCTGATGTGCGCTTTGTAATTCATCACTCTCTCCCAAAGTCTATTGAAGGCTATCATCAGGAATGTGGTCGAGCTGGTAGAGATGGCCAACGTGCATCTTGTGTGTTGTATTACAGTTACAGTGACTATATACGAGTCAAACATATGATTAGCCAAGGAATTATAGAGCAAAGCTCATTGACACCTGGACAGAATCGTATGAATGCAGCTAATTCTGGGAGAATACTGGAAACAAATACTGAGAATCTTTTGCGCATGGTGAGTTATTGCGAAAATGATGTTGATTGCCGACGGCTTCTACAGCTTATTCATTTTGGAGAAAAATTTGACTGTACAACCTGCAATAAGACTTGCGATAATTGTTTGAAGATCAAGAGTTTCATTGAGAAGGATGTCACGCAGATAGCAAAGCAATTGGTTGAACTGGTGAAATTAGCGGGGCAGCAGTGTTCATCAGCTCATATTTTAGAAGTGTACAGGGGCTCCTTAAGCCAATTTGTCAAGAAACACAGGCATCAGACTTTGAGTCTGCATGGAGCAGGAAAACATCTACCCAAGGGAGAAGCTTCCCGTGTATTACGCCATCTTGTTACAGAGGACTTGCTTGTGGAGGAAGTGAAGAAAAGTGATGTTTATGGATCTGTATCATCAATACTAAAGGTTAATGAGTTCAAAGCATGCGAACTTTTCTCTGGCCGGAAGACAATTATGTTAAGATTCCCTTCCTCTGTAAAAGCTTCTAAGCAGTGGAACTCTGAAGTGATTTCAACTAAAGGTTCATTGACATCTGAGAAGCTGATTCCTCCACAAATTGGCACCGGACAACCTCAGTCCAATGGAGATGTGGAGCTCTCTACCCAATTATTTATTTCTTTGAAAATGCTTCGAACTACTCTCATAAGGGAAGCTGATGATAGGGTCATGGCACACCACATATTTGGGAATAAGACGTTGAAGGATTTGAGCTCCATAATTCCCAGAACGAAGGAGGAACTCCTGGAAATATATGGGATTAACAAGGGTAAGGTGACAAAATATGGAGATCGGATACTCGAAACCATTGAATCTACCATCAAGGATTACTACAGGACATACAAAAACAGCAGCAGTAGCAATGACAGTAATGAGGGAAAGAGGAAAAGAGACGGTAACAAAGATCAAAATGGACATGTAGAGGATGATGACTTCACCAAAAGCACTGATCAATCAAAGAAAAGGCCGTCAAAAAGGCAGAGCAAAACTATTGAAGACTATAGTTATCTGGAGCCCGATTTCAACCAAATAGTGGATGATGATCTAGACTTGTATGGTTATAATTTTGAAGTGAATGCTTCAGCTACAAAGACTGTTCAGAAGGTTGGCGGAAGAGTGCTTCCGCAATGGTCGACGTATGGAAATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009743 GO:0009744 GO:0009888 GO:0009987 GO:0010019 GO:0010033 GO:0010073 GO:0010074 GO:0010492 GO:0016787 GO:0019538 GO:0019827 GO:0023052 GO:0030163 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048511 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070001 GO:0070011 GO:0071704 GO:0098727 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

1220

Amino Acids

136.82

Weight (kDa)

7.22

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	471 - 638	3.5e-25	DEAD/DEAH box helicase
Helicase_C	PF00271	675 - 782	9.3e-20	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	793 - 875	2.1e-14	RecQ zinc-binding
RQC	PF09382	882 - 998	1.6e-19	RQC domain
HRDC	PF00570	1040 - 1107	1.3e-11	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12700 AT3G12700 AT3G12700
fragaria_vesca	FvH4_3g13820 FvH4_5g37920
malus_domestica	MD05G1240800.v1.1 MD10G1219200.v1.1
prunus_persica	Prupe.4G124800_v2.0.a1
pyrus_communis	pycom05g21700 pycom10g18470
rosa_chinensis	RchiOBHm_Chr5g0023001 RchiOBHm_Chr7g0239861
rosa_laevigata	RLG00000000724 RLG00000032688
rosa_roxburghii	Rroxscaffold_1G00056340 Rroxscaffold_3G00220750
rosa_rugosa	Rorug05G0076400 Rorug07G0330600
rosa_samantha	Rh5AG162600 Rh5BG161800 Rh5CG176500 Rh5DG163200 Rh7AG484100 Rh7BG457200 Rh7CG501600 Rh7DG469800
rosa_wichuraiana	Rw5G014650 Rw7G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3573
Acc16I	TGCGCA	2 cut(s)	473, 2513
Acc36I	ACCTGC	1 cut(s)	2606
AccB1I	GGYRCC	1 cut(s)	3074
AccB7I	CCANNNNNTGG	3 cut(s)	709, 3071, 3544
AccI	GTMKAC	1 cut(s)	3644
AciI	CCGC	6 cut(s)	356, 1405, 1732, 2696, 3621, 3635
AclWI	GGATC	4 cut(s)	205, 2159, 2172, 2905
AcoI	YGGCCR	4 cut(s)	403, 1444, 2344, 2953
AcsI	RAATTY	4 cut(s)	562, 1069, 1204, 2582
AcuI	CTGAAG	4 cut(s)	260, 1329, 3036, 3576
AdeI	CACNNNGTG	1 cut(s)	709
AfaI	GTAC	5 cut(s)	31, 719, 835, 2593, 2735
AfiI	CCNNNNNNNGG	5 cut(s)	709, 1420, 1475, 3071, 3544
AflII	CTTAAG	1 cut(s)	2746
AflIII	ACRYGT	1 cut(s)	3427
AhdI	GACNNNNNGTC	1 cut(s)	2784
AjnI	CCWGG	6 cut(s)	304, 443, 1093, 1519, 2443, 3255
AloI	GAACNNNNNNTCC	2 cut(s)	1263, 1295
Alw21I	GWGCWC	4 cut(s)	241, 1657, 3111, 3227
Alw26I	GTCTC	2 cut(s)	793, 3396
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	205, 2159, 2172, 2905
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	6 cut(s)	201, 403, 1444, 2344, 2953, 3476
ApaLI	GTGCAC	1 cut(s)	237
ApoI	RAATTY	4 cut(s)	562, 1069, 1204, 2582
AseI	ATTAAT	2 cut(s)	390, 1428
Asp700I	GAANNNNTTC	3 cut(s)	641, 975, 1859
AspLEI	GCGC	3 cut(s)	474, 2271, 2514
AspS9I	GGNCC	1 cut(s)	1340
AsuHPI	GGTGA	6 cut(s)	677, 1687, 2530, 2698, 3298, 3439
AsuII	TTCGAA	2 cut(s)	635, 3145
AsuNHI	GCTAGC	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	1340
BaeGI	GKGCMC	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	1860, 1893
BalI	TGGCCA	3 cut(s)	405, 1446, 2346
BamHI	GGATCC	1 cut(s)	2164
BanI	GGYRCC	1 cut(s)	3074
BanII	GRGCYC	4 cut(s)	2744, 3111, 3227, 3528
BbsI	GAAGAC	3 cut(s)	515, 2966, 3513
Bbv12I	GWGCWC	4 cut(s)	241, 1657, 3111, 3227
BccI	CCATC	7 cut(s)	649, 751, 781, 1331, 2336, 2850, 3338
BceAI	ACGGC	2 cut(s)	2567, 3463
BcgI	CGANNNNNNTGC	2 cut(s)	799, 833
BciT130I	CCWGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
BciVI	GTATCC	1 cut(s)	3300
BclI	TGATCA	1 cut(s)	3460
BcoDI	GTCTC	2 cut(s)	793, 3396
BfaI	CTAG	6 cut(s)	192, 288, 333, 1770, 1905, 3557
BfmI	CTRYAG	7 cut(s)	366, 1509, 1893, 2229, 2558, 3343, 3511
BfrI	CTTAAG	1 cut(s)	2746
BfuAI	ACCTGC	1 cut(s)	2606
BfuI	GTATCC	1 cut(s)	3300
BglII	AGATCT	1 cut(s)	279
Bme1390I	CCNGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
Bme18I	GGWCC	1 cut(s)	1340
BmeRI	GACNNNNNGTC	1 cut(s)	2784
BmgT120I	GGNCC	1 cut(s)	1340
BmiI	GGNNCC	4 cut(s)	2166, 2743, 3076, 3525
BmrFI	CCNGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
BmrI	ACTGGG	1 cut(s)	1139
BmsI	GCATC	7 cut(s)	343, 499, 557, 649, 1088, 2363, 2782
BmtI	GCTAGC	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	1139
BoxI	GACNNNNGTC	1 cut(s)	1063
BpiI	GAAGAC	3 cut(s)	515, 2966, 3513
BplI	GAGNNNNNCTC	2 cut(s)	2417, 2449
BpmI	CTGGAG	4 cut(s)	1385, 1494, 1857, 3542
Bpu14I	TTCGAA	2 cut(s)	635, 3145
BpuEI	CTTGAG	3 cut(s)	704, 1040, 1104
Bsa29I	ATCGAT	1 cut(s)	429
BsaBI	GATNNNNATC	2 cut(s)	2902, 3552
BsaJI	CCNNGG	4 cut(s)	1094, 1349, 2413, 2814
BsaWI	WCCGGW	1 cut(s)	3077
BsaXI	ACNNNNNCTCC	6 cut(s)	1075, 1105, 1324, 1354, 2726, 2756
Bsc4I	CCNNNNNNNGG	5 cut(s)	709, 1420, 1475, 3071, 3544
Bse1I	ACTGG	6 cut(s)	1145, 1368, 1477, 1874, 2490, 2688
Bse3DI	GCAATG	4 cut(s)	49, 445, 3379, 3644
Bse8I	GATNNNNATC	2 cut(s)	2902, 3552
BseBI	CCWGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	1094, 1349, 2413, 2814
BseGI	GGATG	9 cut(s)	664, 1054, 1079, 1220, 1278, 1342, 2656, 3442, 3553
BseJI	GATNNNNATC	2 cut(s)	2902, 3552
BseLI	CCNNNNNNNGG	5 cut(s)	709, 1420, 1475, 3071, 3544
BseMI	GCAATG	4 cut(s)	49, 445, 3379, 3644
BseMII	CTCAG	8 cut(s)	154, 330, 587, 967, 1649, 2490, 3039, 3101
BseNI	ACTGG	6 cut(s)	1145, 1368, 1477, 1874, 2490, 2688
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	241
BshFI	GGCC	6 cut(s)	203, 405, 1446, 2346, 2955, 3478
BshNI	GGYRCC	1 cut(s)	3074
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	4 cut(s)	241, 1657, 3111, 3227
BsiSI	CCGG	3 cut(s)	1960, 2956, 3078
BslI	CCNNNNNNNGG	5 cut(s)	709, 1420, 1475, 3071, 3544
BsmAI	GTCTC	2 cut(s)	793, 3396
BsmBI	CGTCTC	1 cut(s)	3396
BsmI	GAATGC	3 cut(s)	1130, 2467, 3592
BsnI	GGCC	6 cut(s)	203, 405, 1446, 2346, 2955, 3478
Bsp119I	TTCGAA	2 cut(s)	635, 3145
Bsp1286I	GDGCHC	6 cut(s)	241, 1657, 2744, 3111, 3227, 3528
Bsp1407I	TGTACA	3 cut(s)	833, 2591, 2733
BspACI	CCGC	6 cut(s)	356, 1405, 1732, 2696, 3621, 3635
BspANI	GGCC	6 cut(s)	203, 405, 1446, 2346, 2955, 3478
BspCNI	CTCAG	8 cut(s)	153, 331, 586, 966, 1650, 2491, 3040, 3100
BspDI	ATCGAT	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	2166, 2743, 3076, 3525
BspMI	ACCTGC	1 cut(s)	2606
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	4 cut(s)	205, 2159, 2172, 2905
BspT104I	TTCGAA	2 cut(s)	635, 3145
BspT107I	GGYRCC	1 cut(s)	3074
BspTI	CTTAAG	1 cut(s)	2746
BsrDI	GCAATG	4 cut(s)	49, 445, 3379, 3644
BsrGI	TGTACA	3 cut(s)	833, 2591, 2733
BsrI	ACTGG	6 cut(s)	1145, 1368, 1477, 1874, 2490, 2688
BssECI	CCNNGG	4 cut(s)	1094, 1349, 2413, 2814
BssT1I	CCWWGG	2 cut(s)	2413, 2814
Bst2UI	CCWGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
Bst6I	CTCTTC	4 cut(s)	289, 1231, 1255, 3619
BstAFI	CTTAAG	1 cut(s)	2746
BstAUI	TGTACA	3 cut(s)	833, 2591, 2733
BstBI	TTCGAA	2 cut(s)	635, 3145
BstC8I	GCNNGC	5 cut(s)	261, 334, 463, 1929, 2938
BstDSI	CCRYGG	1 cut(s)	1349
BstEII	GGTNACC	1 cut(s)	1391
BstF5I	GGATG	9 cut(s)	664, 1054, 1079, 1220, 1278, 1342, 2656, 3442, 3553
BstHHI	GCGC	3 cut(s)	474, 2271, 2514
BstMAI	GTCTC	2 cut(s)	793, 3396
BstNI	CCWGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
BstNSI	RCATGY	5 cut(s)	221, 263, 910, 2940, 3431
BstPAI	GACNNNNGTC	1 cut(s)	1063
BstPI	GGTNACC	1 cut(s)	1391
BstSCI	CCNGG	6 cut(s)	304, 443, 1093, 1519, 2443, 3255
BstSFI	CTRYAG	7 cut(s)	366, 1509, 1893, 2229, 2558, 3343, 3511
BstSLI	GKGCMC	1 cut(s)	241
BstV2I	GAAGAC	3 cut(s)	515, 2966, 3513
BstX2I	RGATCY	3 cut(s)	279, 2164, 2897
BstXI	CCANNNNNNTGG	3 cut(s)	1045, 1986, 3197
BstYI	RGATCY	3 cut(s)	279, 2164, 2897
Bsu15I	ATCGAT	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	3300
BsuRI	GGCC	6 cut(s)	203, 405, 1446, 2346, 2955, 3478
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	1349
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	9 cut(s)	664, 1054, 1079, 1220, 1278, 1342, 2656, 3442, 3553
BtsI	GCAGTG	4 cut(s)	481, 2201, 2711, 3011
BveI	ACCTGC	1 cut(s)	2606
Cac8I	GCNNGC	5 cut(s)	261, 334, 463, 1929, 2938
CaiI	CAGNNNCTG	1 cut(s)	878
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	3 cut(s)	474, 2271, 2514
Cfr13I	GGNCC	1 cut(s)	1340
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	5 cut(s)	30, 718, 834, 2592, 2734
CspCI	CAANNNNNGTGG	4 cut(s)	31, 66, 810, 845
CviQI	GTAC	5 cut(s)	30, 718, 834, 2592, 2734
DraI	TTTAAA	1 cut(s)	1749
DraIII	CACNNNGTG	1 cut(s)	709
DriI	GACNNNNNGTC	1 cut(s)	2784
EaeI	YGGCCR	4 cut(s)	403, 1444, 2344, 2953
Eam1104I	CTCTTC	4 cut(s)	289, 1231, 1255, 3619
Eam1105I	GACNNNNNGTC	1 cut(s)	2784
EarI	CTCTTC	4 cut(s)	289, 1231, 1255, 3619
EciI	GGCGGA	2 cut(s)	1394, 3636
Ecl136II	GAGCTC	2 cut(s)	3109, 3225
Eco130I	CCWWGG	2 cut(s)	2413, 2814
Eco24I	GRGCYC	4 cut(s)	2744, 3111, 3227, 3528
Eco47I	GGWCC	1 cut(s)	1340
Eco53kI	GAGCTC	2 cut(s)	3109, 3225
Eco57I	CTGAAG	4 cut(s)	260, 1329, 3036, 3576
Eco91I	GGTNACC	1 cut(s)	1391
EcoICRI	GAGCTC	2 cut(s)	3109, 3225
EcoO65I	GGTNACC	1 cut(s)	1391
EcoRI	GAATTC	2 cut(s)	562, 1204
EcoRII	CCWGG	6 cut(s)	304, 443, 1093, 1519, 2443, 3255
EcoT14I	CCWWGG	2 cut(s)	2413, 2814
EcoT22I	ATGCAT	2 cut(s)	1578, 2021
EcoT38I	GRGCYC	4 cut(s)	2744, 3111, 3227, 3528
ErhI	CCWWGG	2 cut(s)	2413, 2814
Esp3I	CGTCTC	1 cut(s)	3396
FalI	AAGNNNNNCTT	2 cut(s)	2965, 2997
FauI	CCCGC	2 cut(s)	349, 2689
FauNDI	CATATG	2 cut(s)	408, 2403
FbaI	TGATCA	1 cut(s)	3460
FblI	GTMKAC	1 cut(s)	3644
FokI	GGATG	9 cut(s)	671, 1061, 1066, 1207, 1265, 1349, 2663, 3449, 3560
FriOI	GRGCYC	4 cut(s)	2744, 3111, 3227, 3528
FspBI	CTAG	6 cut(s)	192, 288, 333, 1770, 1905, 3557
FspI	TGCGCA	2 cut(s)	473, 2513
GlaI	GCGC	3 cut(s)	473, 2270, 2513
GsuI	CTGGAG	4 cut(s)	1385, 1494, 1857, 3542
HaeIII	GGCC	6 cut(s)	203, 405, 1446, 2346, 2955, 3478
HapII	CCGG	3 cut(s)	1960, 2956, 3078
HhaI	GCGC	3 cut(s)	474, 2271, 2514
Hin6I	GCGC	3 cut(s)	472, 2269, 2512
HinP1I	GCGC	3 cut(s)	472, 2269, 2512
HincII	GTYRAC	4 cut(s)	700, 1300, 2215, 3645
HindII	GTYRAC	4 cut(s)	700, 1300, 2215, 3645
HindIII	AAGCTT	4 cut(s)	755, 974, 2823, 2994
HpaI	GTTAAC	1 cut(s)	1300
HpaII	CCGG	3 cut(s)	1960, 2956, 3078
HphI	GGTGA	6 cut(s)	677, 1687, 2530, 2698, 3298, 3439
Hpy99I	CGWCG	2 cut(s)	2553, 3649
HpyAV	CCTTC	8 cut(s)	895, 1304, 2300, 2641, 2991, 3208, 3238, 3607
HpyCH4IV	ACGT	4 cut(s)	2176, 2350, 3209, 3647
HpySE526I	ACGT	4 cut(s)	2176, 2350, 3209, 3647
HspAI	GCGC	3 cut(s)	472, 2269, 2512
Ksp22I	TGATCA	1 cut(s)	3460
KspAI	GTTAAC	1 cut(s)	1300
LmnI	GCTCC	8 cut(s)	94, 291, 1506, 2747, 2795, 3106, 3230, 3523
LweI	GCATC	7 cut(s)	343, 499, 557, 649, 1088, 2363, 2782
MaeI	CTAG	6 cut(s)	192, 288, 333, 1770, 1905, 3557
MaeII	ACGT	4 cut(s)	2176, 2350, 3209, 3647
MfeI	CAATTG	2 cut(s)	1736, 2672
MflI	RGATCY	3 cut(s)	279, 2164, 2897
MhlI	GDGCHC	6 cut(s)	241, 1657, 2744, 3111, 3227, 3528
MlsI	TGGCCA	3 cut(s)	405, 1446, 2346
MluNI	TGGCCA	3 cut(s)	405, 1446, 2346
MlyI	GAGTC	4 cut(s)	34, 1810, 2403, 2794
MmeI	TCCRAC	2 cut(s)	343, 1062
Mox20I	TGGCCA	3 cut(s)	405, 1446, 2346
Mph1103I	ATGCAT	2 cut(s)	1578, 2021
MroXI	GAANNNNTTC	3 cut(s)	641, 975, 1859
MscI	TGGCCA	3 cut(s)	405, 1446, 2346
MslI	CAYNNNNRTG	1 cut(s)	2058
Msp20I	TGGCCA	3 cut(s)	405, 1446, 2346
MspA1I	CMGCKG	1 cut(s)	1127
MspCI	CTTAAG	1 cut(s)	2746
MspI	CCGG	3 cut(s)	1960, 2956, 3078
MspR9I	CCNGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
MunI	CAATTG	2 cut(s)	1736, 2672
Mva1269I	GAATGC	3 cut(s)	1130, 2467, 3592
MvaI	CCWGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
NdeI	CATATG	2 cut(s)	408, 2403
NheI	GCTAGC	1 cut(s)	332
NlaIV	GGNNCC	4 cut(s)	2166, 2743, 3076, 3525
NmuCI	GTSAC	6 cut(s)	383, 541, 1693, 2381, 2653, 3286
NsbI	TGCGCA	2 cut(s)	473, 2513
NsiI	ATGCAT	2 cut(s)	1578, 2021
NspI	RCATGY	5 cut(s)	221, 263, 910, 2940, 3431
NspV	TTCGAA	2 cut(s)	635, 3145
PaeI	GCATGC	2 cut(s)	263, 2940
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	1 cut(s)	3427
PctI	GAATGC	3 cut(s)	1130, 2467, 3592
PdmI	GAANNNNTTC	3 cut(s)	641, 975, 1859
PfeI	GAWTC	9 cut(s)	806, 1009, 1157, 1645, 2452, 2503, 2976, 3058, 3323
PflMI	CCANNNNNTGG	3 cut(s)	709, 3071, 3544
PfoI	TCCNGGA	1 cut(s)	3255
PleI	GAGTC	4 cut(s)	33, 1809, 2402, 2793
PpsI	GAGTC	4 cut(s)	33, 1809, 2402, 2793
PscI	ACATGT	1 cut(s)	3427
PshAI	GACNNNNGTC	1 cut(s)	1063
PshBI	ATTAAT	2 cut(s)	390, 1428
PsiI	TTATAA	1 cut(s)	3573
Psp124BI	GAGCTC	2 cut(s)	3111, 3227
Psp6I	CCWGG	6 cut(s)	304, 443, 1093, 1519, 2443, 3255
PspEI	GGTNACC	1 cut(s)	1391
PspGI	CCWGG	6 cut(s)	304, 443, 1093, 1519, 2443, 3255
PspN4I	GGNNCC	4 cut(s)	2166, 2743, 3076, 3525
PspPI	GGNCC	1 cut(s)	1340
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	3 cut(s)	279, 2164, 2897
PvuII	CAGCTG	1 cut(s)	1127
RsaI	GTAC	5 cut(s)	31, 719, 835, 2593, 2735
RsaNI	GTAC	5 cut(s)	30, 718, 834, 2592, 2734
RseI	CAYNNNNRTG	1 cut(s)	2058
SacI	GAGCTC	2 cut(s)	3111, 3227
SalI	GTCGAC	1 cut(s)	3643
Sau96I	GGNCC	1 cut(s)	1340
SchI	GAGTC	4 cut(s)	34, 1810, 2403, 2794
ScrFI	CCNGG	6 cut(s)	306, 445, 1095, 1521, 2445, 3257
SduI	GDGCHC	6 cut(s)	241, 1657, 2744, 3111, 3227, 3528
SfaNI	GCATC	7 cut(s)	343, 499, 557, 649, 1088, 2363, 2782
SfcI	CTRYAG	7 cut(s)	366, 1509, 1893, 2229, 2558, 3343, 3511
SfuI	TTCGAA	2 cut(s)	635, 3145
SinI	GGWCC	1 cut(s)	1340
SmiMI	CAYNNNNRTG	1 cut(s)	2058
SmlI	CTYRAG	4 cut(s)	683, 1019, 1119, 2746
SmoI	CTYRAG	4 cut(s)	683, 1019, 1119, 2746
SphI	GCATGC	2 cut(s)	263, 2940
SsiI	CCGC	6 cut(s)	356, 1405, 1732, 2696, 3621, 3635
SspI	AATATT	3 cut(s)	691, 1594, 1670
SspMI	CTAG	6 cut(s)	192, 288, 333, 1770, 1905, 3557
SstI	GAGCTC	2 cut(s)	3111, 3227
StyD4I	CCNGG	6 cut(s)	304, 443, 1093, 1519, 2443, 3255
StyI	CCWWGG	2 cut(s)	2413, 2814
TaiI	ACGT	4 cut(s)	2179, 2353, 3212, 3650
TaqI	TCGA	8 cut(s)	111, 429, 635, 809, 2329, 3145, 3312, 3644
TaqII	GACCGA	1 cut(s)	474
TatI	WGTACW	3 cut(s)	833, 2591, 2733
TauI	GCSGC	1 cut(s)	1735
TfiI	GAWTC	9 cut(s)	806, 1009, 1157, 1645, 2452, 2503, 2976, 3058, 3323
TseFI	GTSAC	6 cut(s)	383, 541, 1693, 2381, 2653, 3286
Tsp45I	GTSAC	6 cut(s)	383, 541, 1693, 2381, 2653, 3286
TspGWI	ACGGA	2 cut(s)	1075, 1247
Van91I	CCANNNNNTGG	3 cut(s)	709, 3071, 3544
Vha464I	CTTAAG	1 cut(s)	2746
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	1340
VspI	ATTAAT	2 cut(s)	390, 1428
XapI	RAATTY	4 cut(s)	562, 1069, 1204, 2582
XbaI	TCTAGA	1 cut(s)	3556
XceI	RCATGY	5 cut(s)	221, 263, 910, 2940, 3431
XcmI	CCANNNNNNNNNTGG	2 cut(s)	41, 3100
XmiI	GTMKAC	1 cut(s)	3644
XmnI	GAANNNNTTC	3 cut(s)	641, 975, 1859
XspI	CTAG	6 cut(s)	192, 288, 333, 1770, 1905, 3557
Zsp2I	ATGCAT	2 cut(s)	1578, 2021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.