AT3G12710

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012861
Physical Location & Seq
Reverse (-)
4040324 .. 4042075
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12710.1

Sequence Viewer

Length: 939 bp
ATGAGCAAAACGGAAGCAATCAGCTTGACCAAAAGGGGAATGTTGCCGCCAAGTAGTTGCAATAGCCTAATGGACCGCTCTGAGTCCCTTAAGAGGGACAGTGTGATGGGCAATGGTGCAGCCAAAGTGAGAGGAAGCTTGGAGCGCAAGAAATCAAAGAGTTTTAAGGAAGGAGATAGTTATTCTTCGTGGCTCATAACGGAGGCTCCTGGGAGTATAGCCGCCGTGAGGAGAGAGCAAGTGGCGGCACAACAAGCACTAAGGAAACTAAAGATTGCTCATTACGGTAGATCCAAATCAACCATTAATTTCACTTCTTCCAAAGTCGTCCCTCTTCTTAACCCTAACCCTAACCCTCATCCTCAGAGATGCAGCTTCCTCACCCCCACTTCTGATCCTATTTACGTGGCCTACCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGACGTTGTTCGAACTGCTGACCCTAAGCGGCGCACAAGTAGGCTCCGATTGGACTTCAACCTTGAGAAAACGCCATGACTATAGGAAGGCCTTTATGGAGTTTGAGGCGGAAGTGGTTGCCAAACTCACCGAGAAAGAGATGAATGCAATAAGCATCGAATACAAGATAGAGATGAGCAAAGTGAGAGGTGTTGTGGAAAACGCTAAAAAGATCGTAGAGATCAAGAAAGCGTTTGTGTCATTAGAGAAATACCTTTGGGGATTTGTGAACCACAAACCAATCTCCACGAACTACAAGCTTGGACACAAGATTCCGGTCAAGACATCGAAGTCGGAGAGCATCAGCAAAGACATGGTTCGTCGAGGCTTCCGGTTCGTGGGTCCCACTGTGGTTCACTCATTCATGCAAGCCGCTGGTCTTACAAACGACCACTTGATCACTTGCTGTCGCCACGCTCCTTGCACTCTCCTTGCAACCAATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

312

Amino Acids

34.92

Weight (kDa)

9.66

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 130 - 302 5.7e-65 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012861)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12710
fragaria_vesca FvH4_3g13890
malus_domestica MD05G1240400.v1.1 MD10G1218500.v1.1
prunus_persica Prupe.4G125700_v2.0.a1
pyrus_communis pycom05g21640 pycom10g18430
rosa_chinensis RchiOBHm_Chr5g0023071
rosa_laevigata RLG00000032698
rosa_multiflora Rmu_co8421393.1_g000001
rosa_roxburghii Rroxscaffold_1G00056250
rosa_rugosa Rorug05G0077100
rosa_samantha Rh5AG163200 Rh5BG162500 Rh5CG177300 Rh5DG163700
rosa_wichuraiana Rw5G014720 Rw5G014990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 781
AccBSI CCGCTC 1 cut(s) 78
AciI CCGC 7 cut(s) 47, 76, 222, 245, 480, 560, 864
AclWI GGATC 2 cut(s) 285, 389
AfiI CCNNNNNNNGG 4 cut(s) 93, 94, 228, 829
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 510
AjnI CCWGG 1 cut(s) 208
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 4 cut(s) 24, 138, 375, 751
AluI AGCT 4 cut(s) 24, 138, 375, 751
AlwI GGATC 2 cut(s) 285, 389
AoxI GGCC 2 cut(s) 408, 540
ApeKI GCWGC 2 cut(s) 119, 372
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 2 cut(s) 147, 485
AspS9I GGNCC 2 cut(s) 73, 833
AsuHPI GGTGA 2 cut(s) 373, 571
AsuII TTCGAA 1 cut(s) 462
AvaII GGWCC 2 cut(s) 73, 833
BbvI GCAGC 2 cut(s) 131, 384
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 888
BfmI CTRYAG 1 cut(s) 532
BfrI CTTAAG 1 cut(s) 89
BisI GCNGC 7 cut(s) 47, 120, 222, 246, 373, 481, 864
BlsI GCNGC 7 cut(s) 48, 121, 223, 247, 374, 482, 865
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 73, 833
BmgT120I GGNCC 2 cut(s) 73, 833
BmiI GGNNCC 4 cut(s) 207, 496, 834, 835
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 3 cut(s) 359, 615, 801
Bpu10I CCTNAGC 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 535
BsaAI YACGTR 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 209
BsaWI WCCGGW 2 cut(s) 766, 822
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 423, 453
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 94, 228, 829
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 295
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 295
BseLI CCNNNNNNNGG 4 cut(s) 93, 94, 228, 829
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 72, 377
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 131, 384
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 2 cut(s) 410, 542
BsiSI CCGG 2 cut(s) 767, 823
BslFI GGGAC 4 cut(s) 70, 110, 314, 819
BslI CCNNNNNNNGG 4 cut(s) 93, 94, 228, 829
BsmFI GGGAC 4 cut(s) 70, 110, 314, 819
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 2 cut(s) 410, 542
Bsp119I TTCGAA 1 cut(s) 462
Bsp143I GATC 5 cut(s) 290, 394, 663, 672, 888
BspACI CCGC 7 cut(s) 47, 76, 222, 245, 480, 560, 864
BspANI GGCC 2 cut(s) 410, 542
BspCNI CTCAG 2 cut(s) 73, 376
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 4 cut(s) 207, 496, 834, 835
BspPI GGATC 2 cut(s) 285, 389
BspT104I TTCGAA 1 cut(s) 462
BspTI CTTAAG 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 5 cut(s) 290, 394, 663, 672, 888
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 3 cut(s) 101, 287, 841
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 406
BstBI TTCGAA 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 4 cut(s) 81, 260, 363, 476
BstF5I GGATG 1 cut(s) 358
BstHHI GCGC 2 cut(s) 147, 485
BstKTI GATC 5 cut(s) 293, 397, 666, 675, 891
BstMBI GATC 5 cut(s) 290, 394, 663, 672, 888
BstMWI GCNNNNNNNGC 2 cut(s) 144, 254
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 131, 384
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 2 cut(s) 410, 542
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 106, 837
Cac8I GCNNGC 1 cut(s) 861
CciI TCATGA 1 cut(s) 442
CfoI GCGC 2 cut(s) 147, 485
Cfr13I GGNCC 2 cut(s) 73, 833
CspCI CAANNNNNGTGG 2 cut(s) 893, 928
CviAII CATG 5 cut(s) 416, 443, 527, 805, 856
DdeI CTNAG 4 cut(s) 81, 260, 363, 476
DpnI GATC 5 cut(s) 292, 396, 665, 674, 890
DpnII GATC 5 cut(s) 290, 394, 663, 672, 888
DrdI GACNNNNNNGTC 1 cut(s) 781
DseDI GACNNNNNNGTC 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 575
Eco147I AGGCCT 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 73, 833
EcoO109I RGGNCCY 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 5 cut(s) 419, 446, 530, 808, 859
FaiI YATR 9 cut(s) 197, 218, 417, 444, 528, 534, 548, 806, 857
FaqI GGGAC 4 cut(s) 70, 110, 314, 819
FatI CATG 5 cut(s) 415, 442, 526, 804, 855
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 7 cut(s) 47, 120, 222, 246, 373, 481, 864
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 7 cut(s) 47, 120, 222, 246, 373, 481, 864
GlaI GCGC 2 cut(s) 146, 484
GluI GCNGC 7 cut(s) 47, 120, 222, 246, 373, 481, 864
HaeIII GGCC 2 cut(s) 410, 542
HapII CCGG 2 cut(s) 767, 823
HhaI GCGC 2 cut(s) 147, 485
Hin1II CATG 5 cut(s) 419, 446, 530, 808, 859
Hin6I GCGC 2 cut(s) 145, 483
HinP1I GCGC 2 cut(s) 145, 483
HindIII AAGCTT 2 cut(s) 136, 749
HinfI GANTC 2 cut(s) 83, 763
HpaII CCGG 2 cut(s) 767, 823
HphI GGTGA 2 cut(s) 373, 571
Hpy166II GTNNAC 2 cut(s) 721, 847
Hpy188I TCNGA 5 cut(s) 82, 366, 394, 499, 787
Hpy188III TCNNGA 3 cut(s) 443, 676, 772
Hpy8I GTNNAC 2 cut(s) 721, 847
Hpy99I CGWCG 1 cut(s) 816
HpyAV CCTTC 2 cut(s) 164, 532
HpyCH4III ACNGT 3 cut(s) 101, 287, 841
HpyCH4IV ACGT 2 cut(s) 405, 455
HpyCH4V TGCA 7 cut(s) 60, 119, 372, 599, 859, 915, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 254
HpyF3I CTNAG 4 cut(s) 81, 260, 363, 476
HpySE526I ACGT 2 cut(s) 405, 455
Hsp92II CATG 5 cut(s) 419, 446, 530, 808, 859
HspAI GCGC 2 cut(s) 145, 483
KflI GGGWCCC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 5 cut(s) 290, 394, 663, 672, 888
LmnI GCTCC 4 cut(s) 142, 211, 500, 913
LpnPI CCDG 6 cut(s) 195, 222, 450, 780, 836, 852
Lsp1109I GCAGC 2 cut(s) 131, 384
LweI GCATC 3 cut(s) 359, 615, 801
MaeII ACGT 2 cut(s) 405, 455
MalI GATC 5 cut(s) 292, 396, 665, 674, 890
MbiI CCGCTC 1 cut(s) 78
MboI GATC 5 cut(s) 290, 394, 663, 672, 888
MboII GAAGA 4 cut(s) 177, 309, 326, 434
MflI RGATCY 1 cut(s) 290
MluCI AATT 1 cut(s) 307
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 765
MseI TTAA 4 cut(s) 90, 165, 306, 339
MspA1I CMGCKG 1 cut(s) 866
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 2 cut(s) 767, 823
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 144, 254
NdeII GATC 5 cut(s) 290, 394, 663, 672, 888
NlaIII CATG 5 cut(s) 419, 446, 530, 808, 859
NlaIV GGNNCC 4 cut(s) 207, 496, 834, 835
NspV TTCGAA 1 cut(s) 462
PagI TCATGA 1 cut(s) 442
PceI AGGCCT 1 cut(s) 542
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 763
PkrI GCNGC 7 cut(s) 48, 121, 223, 247, 374, 482, 865
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 833
PshBI ATTAAT 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 4 cut(s) 207, 496, 834, 835
PspPI GGNCC 2 cut(s) 73, 833
PspPPI RGGWCCY 1 cut(s) 833
PsuI RGATCY 1 cut(s) 290
SaqAI TTAA 4 cut(s) 90, 165, 306, 339
SatI GCNGC 7 cut(s) 47, 120, 222, 246, 373, 481, 864
Sau3AI GATC 5 cut(s) 290, 394, 663, 672, 888
Sau96I GGNCC 2 cut(s) 73, 833
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 210
SetI ASST 9 cut(s) 26, 140, 377, 408, 458, 515, 643, 708, 753
SfaNI GCATC 3 cut(s) 359, 615, 801
SfcI CTRYAG 1 cut(s) 532
SfuI TTCGAA 1 cut(s) 462
SinI GGWCC 2 cut(s) 73, 833
SmlI CTYRAG 2 cut(s) 89, 514
SmoI CTYRAG 2 cut(s) 89, 514
Sse9I AATT 1 cut(s) 307
SseBI AGGCCT 1 cut(s) 542
SsiI CCGC 7 cut(s) 47, 76, 222, 245, 480, 560, 864
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 3 cut(s) 101, 287, 841
TaiI ACGT 2 cut(s) 408, 458
TaqI TCGA 4 cut(s) 462, 609, 779, 814
TasI AATT 1 cut(s) 307
TauI GCSGC 5 cut(s) 49, 224, 248, 483, 866
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 4 cut(s) 90, 165, 306, 339
Tru9I TTAA 4 cut(s) 90, 165, 306, 339
TscAI CASTG 2 cut(s) 106, 844
TseI GCWGC 2 cut(s) 119, 372
TspDTI ATGAA 4 cut(s) 431, 435, 608, 844
TspGWI ACGGA 2 cut(s) 26, 215
TspRI CASTG 2 cut(s) 106, 844
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 73, 833
VspI ATTAAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.