Rorug05G0077100

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012861
Physical Location & Seq
Reverse (-)
6642254 .. 6650078
7825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0077100.1

Sequence Viewer

Length: 597 bp
ATGGATAAATCATGGATGCATGCTGATAGAAGATCATTGAAGTTTAAGATAGGACTTGAAGACTTTCTTAAGTTCGCTTTAGCAAATGCACGCGACATATCAAAAATATGCTGTCCTTGTTTGAAGTGTTGTAACAATGATGAATTTTCTGTTGGAGTGATCAAGGACCATATATACTTTAATGGTATTGATGTTAGATATAAGCAATGGAAATGGCATGGAGAACCTTCTGCCATGAATGCCGATATATTAGGTGAATCCGAAACAGTAGATATGGGTACTGATTTTGGGATAGGGGATGAAGATGATGAGATTTCGAGTGACTCGAATGAGTTTTTTAGCTCTATTAAAATCTTCAATGCCCAAAAGGGTAGGAAAGGAAGGAAAATAATCCAATGGAAGAATCTTGCTGGTATTCCGGAGCAAACTGATTCTAAGACTTGTGGTTATTTTGTCATGCGTTATATGAAAGAAATTGTGGAGGACAAGAACTTGGAGTTTGCTACCAAGTGGGAAAGGAAATCAAATCTTGCTTACACACAGAAGGATATTGATGTGGTTCGAGCTGAATGGGCAAATCATGTTATGAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

198

Amino Acids

22.96

Weight (kDa)

6.12

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 75 3.1e-18 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012861)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12710
fragaria_vesca FvH4_3g13890
malus_domestica MD05G1240400.v1.1 MD10G1218500.v1.1
prunus_persica Prupe.4G125700_v2.0.a1
pyrus_communis pycom05g21640 pycom10g18430
rosa_chinensis RchiOBHm_Chr5g0023071
rosa_laevigata RLG00000032698
rosa_multiflora Rmu_co8421393.1_g000001
rosa_roxburghii Rroxscaffold_1G00056250
rosa_rugosa Rorug05G0077100
rosa_samantha Rh5AG163200 Rh5BG162500 Rh5CG177300 Rh5DG163700
rosa_wichuraiana Rw5G014720 Rw5G014990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 418
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 1 cut(s) 280
AflII CTTAAG 1 cut(s) 68
AgsI TTSAA 4 cut(s) 40, 59, 124, 358
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 2 cut(s) 342, 566
AluI AGCT 2 cut(s) 342, 566
Aor13HI TCCGGA 1 cut(s) 418
ApoI RAATTY 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 66
BclI TGATCA 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 418
BseGI GGATG 2 cut(s) 21, 304
BseMI GCAATG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 419
BsmI GAATGC 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 32, 159
BspEI TCCGGA 1 cut(s) 418
BspFNI CGCG 1 cut(s) 93
BspTI CTTAAG 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 212
BssMI GATC 2 cut(s) 32, 159
Bst4CI ACNGT 1 cut(s) 268
BstAFI CTTAAG 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 21, 91
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 2 cut(s) 21, 304
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 2 cut(s) 35, 162
BstMBI GATC 2 cut(s) 32, 159
BstMWI GCNNNNNNNGC 2 cut(s) 239, 572
BstNSI RCATGY 1 cut(s) 23
BstUI CGCG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 21, 304
Cac8I GCNNGC 2 cut(s) 21, 91
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 279
CviAII CATG 6 cut(s) 12, 20, 218, 235, 457, 581
CviJI RGCY 2 cut(s) 342, 566
CviKI_1 RGCY 2 cut(s) 342, 566
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 435
DpnI GATC 2 cut(s) 34, 161
DpnII GATC 2 cut(s) 32, 159
Eco47I GGWCC 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 21
FaeI CATG 6 cut(s) 15, 23, 221, 238, 460, 584
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 6 cut(s) 11, 19, 217, 234, 456, 580
FbaI TGATCA 1 cut(s) 159
FokI GGATG 2 cut(s) 28, 311
HapII CCGG 1 cut(s) 419
Hin1II CATG 6 cut(s) 15, 23, 221, 238, 460, 584
HinfI GANTC 4 cut(s) 257, 323, 403, 431
HpaII CCGG 1 cut(s) 419
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 237, 375, 538
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 19, 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 572
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 6 cut(s) 15, 23, 221, 238, 460, 584
Kpn2I TCCGGA 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 32, 159
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 2 cut(s) 396, 432
LweI GCATC 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 131, 320
MalI GATC 2 cut(s) 34, 161
MboI GATC 2 cut(s) 32, 159
MboII GAAGA 5 cut(s) 42, 71, 314, 346, 412
MluCI AATT 2 cut(s) 143, 474
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 1 cut(s) 475
Mph1103I ATGCAT 1 cut(s) 21
MroI TCCGGA 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 4 cut(s) 45, 69, 180, 348
MspCI CTTAAG 1 cut(s) 68
MspI CCGG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 244
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 239, 572
NdeII GATC 2 cut(s) 32, 159
NlaIII CATG 6 cut(s) 15, 23, 221, 238, 460, 584
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 257, 403, 431
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 4 cut(s) 45, 69, 180, 348
Sau3AI GATC 2 cut(s) 32, 159
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 317
SetI ASST 4 cut(s) 229, 256, 344, 568
SfaNI GCATC 1 cut(s) 6
SinI GGWCC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SphI GCATGC 1 cut(s) 23
Sse9I AATT 2 cut(s) 143, 474
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 317, 326, 562
TasI AATT 2 cut(s) 143, 474
TfiI GAWTC 3 cut(s) 257, 403, 431
Tru1I TTAA 4 cut(s) 45, 69, 180, 348
Tru9I TTAA 4 cut(s) 45, 69, 180, 348
TseFI GTSAC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 4 cut(s) 156, 251, 315, 482
Vha464I CTTAAG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.