RLG00000032698

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012861
Physical Location & Seq
Reverse (-)
17966411 .. 17968274
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032698

Sequence Viewer

Length: 1233 bp
ATGTGCAGCTCTAAGGCCAAGGTGACCATGGGGATTGAAATCACACCCCTTGTTTCTAGAATCAATGGCAGACCAGTGCTTCAGCCTACCTGCAATCGAGTTCCTAGCCTAGACCGGCGCAATTCCCTAAAGAAACTGTCAACAGCACCACCACCTCTACCATTATCAACTTCTTCTACCAGCACTAGTCCTAGAATTAGTACCAAGACTTCATTGACAACACCACCAATTTCTCCGAAGTCAAAATCTCCGAGGCCACCGGCGATAAAGAGATCAGGCAATGACCCTAATGGCTTGAACTCCAGTTCTGAGAAAGTTGTGACACCAGGAGGTACCACAAGAGCTAAGGTTTTGGAGAGGAAGAAGTCAAAGAGTTTTAAGCTTGGTGTTGGTGCTGATAATGCTCATGATCATGGTAAACTCTCTTCTGCTTCGATTGAGGCTTCGTTGAGCTATTCCTCTTCTCTGATCACCGAGGCACCAGGAACCATTGCAGCTGGGAGGAGGGAGCAGATGGCTCTTCAACATGCACAGAGAAAGATGAGGATTGCTCATTATGGAAGATCAAAGTCCGCAAATTTTGAAAGGGTTGCTCCAGTTGATACTATGGAAGCCAAAGCTGGTGAAGAAGATCACAAAAGATGCAGCTTCATCACGGCTAATTCAGATCCCATATATGTTGCTTACCATGATCAAGAATGGGGAGTTCCTGTTCATGATGACAAGATGTTATTTGAACTGCTTGTTCTAAGTGGAGCTCAAGTTGGATCAGATTGGACTTCCATTTTAAAGAAACGCCAAGATTTCAGGGATGCATTTTCTGGGTTTGATGCTGAAGCTGTGGCCAGTCTCACTGACAAGCAAATGATGTCGATTTGTTCAGAATATGGCATTGATATAAGCAGAGTCAGAGGAGTAGTAGACAACTCTAACAGAATTCTTGAGGTAAAGAAGGAATTTGGGTCATTTCACAAATACATATGGGGGTTTGTGAATCACAAGCCAATTTCCCCTCAATACAAGCAAGGCTACAAAATCCCAGTGAAGACATCAAAATCAGAGAGCATAAGCAAAGACATGGTTAGGAGGGGGTTTAGGTTTGTTGGTCCAACAGTTGTTCATTCCTTCATGCAAGCCTCTGGCCTCACAAATGACCATTTGACCACCTGCCACAGGCACCTTCAGTGCACCATATTGGCAGCCCATCCTACCACATTGGAACAAGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

411

Amino Acids

44.99

Weight (kDa)

9.77

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 220 - 393 8.5e-66 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012861)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12710
fragaria_vesca FvH4_3g13890
malus_domestica MD05G1240400.v1.1 MD10G1218500.v1.1
prunus_persica Prupe.4G125700_v2.0.a1
pyrus_communis pycom05g21640 pycom10g18430
rosa_chinensis RchiOBHm_Chr5g0023071
rosa_laevigata RLG00000032698
rosa_multiflora Rmu_co8421393.1_g000001
rosa_roxburghii Rroxscaffold_1G00056250
rosa_rugosa Rorug05G0077100
rosa_samantha Rh5AG163200 Rh5BG162500 Rh5CG177300 Rh5DG163700
rosa_wichuraiana Rw5G014720 Rw5G014990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1175
Acc36I ACCTGC 2 cut(s) 98, 1175
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 3 cut(s) 332, 478, 1176
AccI GTMKAC 1 cut(s) 921
AciI CCGC 1 cut(s) 573
AclWI GGATC 2 cut(s) 662, 775
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 3 cut(s) 577, 936, 956
AcuI CTGAAG 3 cut(s) 65, 855, 1166
AfaI GTAC 2 cut(s) 202, 334
AfiI CCNNNNNNNGG 1 cut(s) 1173
AgsI TTSAA 5 cut(s) 38, 298, 524, 584, 737
AhlI ACTAGT 1 cut(s) 185
AjnI CCWGG 2 cut(s) 325, 481
AloI GAACNNNNNNTCC 2 cut(s) 696, 728
Alw21I GWGCWC 2 cut(s) 760, 1190
Alw26I GTCTC 1 cut(s) 854
Alw44I GTGCAC 1 cut(s) 1186
AlwI GGATC 2 cut(s) 662, 775
AoxI GGCC 4 cut(s) 15, 254, 843, 1141
ApaLI GTGCAC 1 cut(s) 1186
ApeKI GCWGC 4 cut(s) 6, 494, 645, 1199
ApoI RAATTY 3 cut(s) 577, 936, 956
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 1106
AsuHPI GGTGA 3 cut(s) 34, 463, 635
AvaII GGWCC 1 cut(s) 1106
BaeGI GKGCMC 1 cut(s) 1190
BalI TGGCCA 1 cut(s) 845
BanI GGYRCC 3 cut(s) 332, 478, 1176
BanII GRGCYC 1 cut(s) 760
BarI GAAGNNNNNNTAC 4 cut(s) 193, 225, 409, 441
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 2 cut(s) 760, 1190
BbvI GCAGC 4 cut(s) 18, 506, 657, 1211
BccI CCATC 2 cut(s) 508, 1212
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 2 cut(s) 327, 483
BclI TGATCA 3 cut(s) 409, 468, 691
BcoDI GTCTC 1 cut(s) 854
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 5 cut(s) 57, 105, 110, 186, 192
BfmI CTRYAG 1 cut(s) 1229
BfuAI ACCTGC 2 cut(s) 98, 1175
BisI GCNGC 4 cut(s) 7, 495, 646, 1200
BlsI GCNGC 4 cut(s) 8, 496, 647, 1201
Bme1390I CCNGG 2 cut(s) 327, 483
Bme18I GGWCC 1 cut(s) 1106
BmgT120I GGNCC 1 cut(s) 1106
BmiI GGNNCC 4 cut(s) 334, 480, 487, 1178
BmrFI CCNGG 2 cut(s) 327, 483
BmrI ACTGGG 1 cut(s) 1034
BmsI GCATC 3 cut(s) 632, 802, 820
BmuI ACTGGG 1 cut(s) 1034
BpiI GAAGAC 1 cut(s) 1052
BplI GAGNNNNNCTC 2 cut(s) 535, 567
BpmI CTGGAG 2 cut(s) 286, 579
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 744, 962
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 4 cut(s) 18, 27, 251, 474
BsaXI ACNNNNNCTCC 4 cut(s) 696, 726, 747, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 1173
Bse118I RCCGGY 2 cut(s) 114, 259
Bse1I ACTGG 5 cut(s) 74, 303, 596, 846, 1040
Bse3DI GCAATG 2 cut(s) 286, 489
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 2 cut(s) 327, 483
BseDI CCNNGG 4 cut(s) 18, 27, 251, 474
BseGI GGATG 2 cut(s) 817, 1204
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 1173
BseMI GCAATG 2 cut(s) 286, 489
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 5 cut(s) 74, 303, 596, 846, 1040
BseRI GAGGAG 2 cut(s) 517, 927
BseSI GKGCMC 1 cut(s) 1190
BseXI GCAGC 4 cut(s) 18, 506, 657, 1211
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 4 cut(s) 17, 256, 845, 1143
BshNI GGYRCC 3 cut(s) 332, 478, 1176
BsiHKAI GWGCWC 2 cut(s) 760, 1190
BsiSI CCGG 2 cut(s) 115, 260
BslI CCNNNNNNNGG 1 cut(s) 1173
BsmAI GTCTC 1 cut(s) 854
BsnI GGCC 4 cut(s) 17, 256, 845, 1143
Bsp1286I GDGCHC 2 cut(s) 760, 1190
Bsp143I GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 573
BspANI GGCC 4 cut(s) 17, 256, 845, 1143
BspCNI CTCAG 1 cut(s) 301
BspHI TCATGA 2 cut(s) 406, 715
BspLI GGNNCC 4 cut(s) 334, 480, 487, 1178
BspMI ACCTGC 2 cut(s) 98, 1175
BspPI GGATC 2 cut(s) 662, 775
BspQI GCTCTTC 1 cut(s) 525
BspT107I GGYRCC 3 cut(s) 332, 478, 1176
BsrDI GCAATG 2 cut(s) 286, 489
BsrFI RCCGGY 2 cut(s) 114, 259
BsrI ACTGG 5 cut(s) 74, 303, 596, 846, 1040
BssAI RCCGGY 2 cut(s) 114, 259
BssECI CCNNGG 4 cut(s) 18, 27, 251, 474
BssMI GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
BssT1I CCWWGG 2 cut(s) 18, 27
Bst2UI CCWGG 2 cut(s) 327, 483
Bst4CI ACNGT 2 cut(s) 138, 1114
Bst6I CTCTTC 3 cut(s) 430, 466, 525
BstC8I GCNNGC 1 cut(s) 1134
BstDEI CTNAG 4 cut(s) 12, 309, 345, 749
BstDSI CCRYGG 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 1171
BstF5I GGATG 2 cut(s) 817, 1204
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 2 cut(s) 327, 483
BstNSI RCATGY 1 cut(s) 530
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 325, 481
BstSFI CTRYAG 1 cut(s) 1229
BstSLI GKGCMC 1 cut(s) 1190
BstV1I GCAGC 4 cut(s) 18, 506, 657, 1211
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
BsuRI GGCC 4 cut(s) 17, 256, 845, 1143
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 817, 1204
BtsIMutI CAGTG 4 cut(s) 81, 852, 1047, 1190
BveI ACCTGC 2 cut(s) 98, 1175
Cac8I GCNNGC 1 cut(s) 1134
CciI TCATGA 2 cut(s) 406, 715
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 2 cut(s) 114, 259
Cfr13I GGNCC 1 cut(s) 1106
Csp6I GTAC 2 cut(s) 201, 333
CviAII CATG 8 cut(s) 28, 407, 413, 527, 689, 716, 1078, 1129
CviQI GTAC 2 cut(s) 201, 333
DdeI CTNAG 4 cut(s) 12, 309, 345, 749
DpnI GATC 8 cut(s) 274, 411, 470, 565, 633, 669, 693, 769
DpnII GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
DraI TTTAAA 1 cut(s) 789
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 3 cut(s) 430, 466, 525
EarI CTCTTC 3 cut(s) 430, 466, 525
Ecl136II GAGCTC 1 cut(s) 758
Eco130I CCWWGG 2 cut(s) 18, 27
Eco24I GRGCYC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 1106
Eco53kI GAGCTC 1 cut(s) 758
Eco57I CTGAAG 3 cut(s) 65, 855, 1166
Eco91I GGTNACC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 758
EcoNI CCTNNNNNAGG 1 cut(s) 1171
EcoO65I GGTNACC 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 936
EcoRII CCWGG 2 cut(s) 325, 481
EcoT14I CCWWGG 2 cut(s) 18, 27
EcoT22I ATGCAT 1 cut(s) 817
EcoT38I GRGCYC 1 cut(s) 760
ErhI CCWWGG 2 cut(s) 18, 27
FaeI CATG 8 cut(s) 31, 410, 416, 530, 692, 719, 1081, 1132
FatI CATG 8 cut(s) 27, 406, 412, 526, 688, 715, 1077, 1128
FauNDI CATATG 1 cut(s) 980
FbaI TGATCA 3 cut(s) 409, 468, 691
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 4 cut(s) 7, 495, 646, 1200
FokI GGATG 2 cut(s) 824, 1191
FriOI GRGCYC 1 cut(s) 760
Fsp4HI GCNGC 4 cut(s) 7, 495, 646, 1200
FspBI CTAG 5 cut(s) 57, 105, 110, 186, 192
GlaI GCGC 1 cut(s) 119
GluI GCNGC 4 cut(s) 7, 495, 646, 1200
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 2 cut(s) 286, 579
HaeIII GGCC 4 cut(s) 17, 256, 845, 1143
HapII CCGG 2 cut(s) 115, 260
HhaI GCGC 1 cut(s) 120
Hin1II CATG 8 cut(s) 31, 410, 416, 530, 692, 719, 1081, 1132
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 60, 906, 994
HpaII CCGG 2 cut(s) 115, 260
HphI GGTGA 3 cut(s) 34, 463, 635
Hpy166II GTNNAC 4 cut(s) 141, 419, 922, 1188
Hpy188I TCNGA 9 cut(s) 237, 252, 310, 468, 667, 772, 883, 911, 1060
Hpy188III TCNNGA 5 cut(s) 57, 407, 695, 716, 941
Hpy8I GTNNAC 4 cut(s) 141, 419, 922, 1188
HpyAV CCTTC 3 cut(s) 946, 1135, 1190
HpyCH4III ACNGT 2 cut(s) 138, 1114
HpyCH4V TGCA 8 cut(s) 6, 93, 494, 530, 645, 815, 1132, 1188
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 4 cut(s) 12, 309, 345, 749
Hsp92II CATG 8 cut(s) 31, 410, 416, 530, 692, 719, 1081, 1132
HspAI GCGC 1 cut(s) 118
KpnI GGTACC 1 cut(s) 336
Ksp22I TGATCA 3 cut(s) 409, 468, 691
Kzo9I GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 3 cut(s) 508, 598, 755
Lsp1109I GCAGC 4 cut(s) 18, 506, 657, 1211
LweI GCATC 3 cut(s) 632, 802, 820
MaeI CTAG 5 cut(s) 57, 105, 110, 186, 192
MaeIII GTNAC 2 cut(s) 22, 319
MalI GATC 8 cut(s) 274, 411, 470, 565, 633, 669, 693, 769
MboI GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
MboII GAAGA 9 cut(s) 165, 373, 417, 453, 512, 573, 638, 641, 1057
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 2 cut(s) 760, 1190
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 8 cut(s) 121, 195, 228, 577, 661, 936, 956, 1005
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 1 cut(s) 915
MmeI TCCRAC 2 cut(s) 745, 1133
Mox20I TGGCCA 1 cut(s) 845
Mph1103I ATGCAT 1 cut(s) 817
MscI TGGCCA 1 cut(s) 845
MseI TTAA 2 cut(s) 378, 788
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 115, 260
MspR9I CCNGG 2 cut(s) 327, 483
MvaI CCWGG 2 cut(s) 327, 483
MwoI GCNNNNNNNGC 1 cut(s) 401
NcoI CCATGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 980
NdeII GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
NlaIII CATG 8 cut(s) 31, 410, 416, 530, 692, 719, 1081, 1132
NlaIV GGNNCC 4 cut(s) 334, 480, 487, 1178
NmuCI GTSAC 2 cut(s) 22, 319
NsiI ATGCAT 1 cut(s) 817
NspI RCATGY 1 cut(s) 530
PagI TCATGA 2 cut(s) 406, 715
PaqCI CACCTGC 1 cut(s) 1175
PciSI GCTCTTC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 60, 994
PkrI GCNGC 4 cut(s) 8, 496, 647, 1201
PleI GAGTC 1 cut(s) 914
PpsI GAGTC 1 cut(s) 914
Psp124BI GAGCTC 1 cut(s) 760
Psp6I CCWGG 2 cut(s) 325, 481
PspEI GGTNACC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 2 cut(s) 325, 481
PspN4I GGNNCC 4 cut(s) 334, 480, 487, 1178
PspPI GGNCC 1 cut(s) 1106
PsuI RGATCY 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 202, 334
RsaNI GTAC 2 cut(s) 201, 333
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 760
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 2 cut(s) 378, 788
SatI GCNGC 4 cut(s) 7, 495, 646, 1200
Sau3AI GATC 8 cut(s) 272, 409, 468, 563, 631, 667, 691, 767
Sau96I GGNCC 1 cut(s) 1106
SchI GAGTC 1 cut(s) 915
ScrFI CCNGG 2 cut(s) 327, 483
SduI GDGCHC 2 cut(s) 760, 1190
SfaNI GCATC 3 cut(s) 632, 802, 820
SfcI CTRYAG 1 cut(s) 1229
SgrAI CRCCGGYG 1 cut(s) 259
SinI GGWCC 1 cut(s) 1106
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 759, 941
SmoI CTYRAG 2 cut(s) 759, 941
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 8 cut(s) 121, 195, 228, 577, 661, 936, 956, 1005
SsiI CCGC 1 cut(s) 573
SspMI CTAG 5 cut(s) 57, 105, 110, 186, 192
SstI GAGCTC 1 cut(s) 760
StyD4I CCNGG 2 cut(s) 325, 481
StyI CCWWGG 2 cut(s) 18, 27
TaaI ACNGT 2 cut(s) 138, 1114
TaqI TCGA 3 cut(s) 97, 434, 872
TasI AATT 8 cut(s) 121, 195, 228, 577, 661, 936, 956, 1005
TfiI GAWTC 2 cut(s) 60, 994
Tru1I TTAA 2 cut(s) 378, 788
Tru9I TTAA 2 cut(s) 378, 788
TscAI CASTG 4 cut(s) 81, 859, 1047, 1190
TseFI GTSAC 2 cut(s) 22, 319
TseI GCWGC 4 cut(s) 6, 494, 645, 1199
Tsp45I GTSAC 2 cut(s) 22, 319
TspDTI ATGAA 5 cut(s) 201, 640, 704, 1109, 1117
TspRI CASTG 4 cut(s) 81, 859, 1047, 1190
VneI GTGCAC 1 cut(s) 1186
VpaK11BI GGWCC 1 cut(s) 1106
XagI CCTNNNNNAGG 1 cut(s) 1171
XapI RAATTY 3 cut(s) 577, 936, 956
XbaI TCTAGA 1 cut(s) 56
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 5 cut(s) 57, 105, 110, 186, 192
Zsp2I ATGCAT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.