Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007047

Physical Location & Seq

Genomic Coordinates Forward (+)

4688546 .. 4690404

Gene Structure 1859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCAACGACCAATTACTCAATGATCTTCATTGGTAATTTACAAGTTGCAGTTGATAGGTCTTCTTTGTATGAATCTTCTGATTACAGTTCATTTGTCGCTAGAGAATGTTTGAACAAGGATAGTGCTATGAAGCCTTACGACATATTCATTTTTGAGAAGGATGAGCATTTTAGTGTTGAAGATCATTATACTGCAGGAAACTCTTCAAATGAAAGCAACACGAGACCTTCTGACATCTTCCTCAAGAAGAAGCTGGTGGGACTAAACCCCTCCATTCTGCAACTAAACAGAGAAAAGAGGAAAGCAACTTTGAAGTTTTCTGGAGATAACAAGGATATTTTACAATCTACTTTGTCTAGCTCAAAGAACATAAATCTTAGTGGTGGTTTGTTTGTCTCTAGAGAATATGAGAACAAGTATGTGAAGTTTGGCGCTAGAATGCGTTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGGCTTGGCATGAGTCTGTGTCTTCTACAAGTGATAAAAATGTTGAGCTTTCTAGTGTTGAGAATCATAAGATAGCTCCAAAGGCTGATGGGCCAGGGAACTCTTCAAATGAAAGCTCCTCAAGTCCTTTTGATATCTTCCTCAAGAAGAAGGTGATGAGACTAAAACCCTCCTTTCTGGAACTGAACAGAGAAAAAAAGAAAGCAGCTAAGGGTTTCAGTGGAATTGTTATTAGACCTGGAATGGTACTTCTCAAGAACTACTTGTCAATCAATAATCAAGTGATGATTGTGAACAAATGTCGTCAACTTGGTTTGGGTGAAGGAGGCTTCTATCAACCTGGTTTTCAAGATGGCGGGTTGTTGCATTTGAAAATGATGTGCCTTGGCAAAAACTGGGACTGTCAAACGCGTCGATATGGAGAGATTCGACCAATTGATGGTTCTGTTCCGCCTCGAATTCCCGTTGAATTCAGTCAGCTTGTTGAGAAAGCAATTAAAGAATCAAAGTCCCTAGTTGCTACAAATTCAAATGAGACAAAGGGAGGAGATGAAATACCACTTTTGTTGCCTGACATATGTGTTGTTAACTTCTACACATCCACCGGGAAACTTGGTCTCCATCAGGTTAGTGTTTACGACAAAACAAGTTTTGATTTCTTAAAGTATAAAGGTGGTTACCTCAATACAGACAAAGGGGAGAGCAAAAAGTCCCTCCGGAAAGGATTGCCTATTGTATCATTTTCTATTGGAGATTCAGCCGAATTCTTGTATGGTGATCAGAAGGATGTTGACAAGGCAGACACGTTAATCTTGGAGTCTGGAGATGTTCTAATATTCGGTGAAAGATCAAGAAATGTCTTCCATGGCGTCAGATCAATTCGTAAGATACTGCCCCCAAGGCTCTTCTTCAGGAAACAAATCTTCAACCAGGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0035553 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

473

Amino Acids

53.09

Weight (kDa)

9.3

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	241 - 369	8.2e-13	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_2	PF13532	400 - 457	4.4e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14140 AT3G14160
fragaria_vesca	FvH4_6g35240 FvH4_6g35240
malus_domestica	MD09G1177300.v1.1
prunus_persica	Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1
pyrus_communis	pycom09g09550
rosa_chinensis	RchiOBHm_Chr2g0146601
rosa_laevigata	RLG00000020209
rosa_multiflora	Rmu_sc0001986.1_g000030
rosa_roxburghii	Rroxscaffold_2G00100020
rosa_rugosa	Rorug02G0395100 Rorug02G0395200 Rorug02G0395300 Rorug02G0395400 Rorug02G0395500 Rorug02G0395600
rosa_samantha	Rh2AG451800 Rh2BG464600 Rh2CG438700 Rh2DG473600
rosa_wichuraiana	Rw2G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccII	CGCG	1 cut(s)	892
AccIII	TCCGGA	1 cut(s)	1197
AciI	CCGC	2 cut(s)	837, 932
AcsI	RAATTY	4 cut(s)	939, 950, 1006, 1244
AcuI	CTGAAG	1 cut(s)	1375
AcyI	GRCGYC	1 cut(s)	1350
AfaI	GTAC	1 cut(s)	729
AfiI	CCNNNNNNNGG	1 cut(s)	920
AflIII	ACRYGT	2 cut(s)	890, 1284
AjnI	CCWGG	4 cut(s)	574, 718, 820, 1410
AjuI	GAANNNNNNNTTGG	2 cut(s)	907, 939
AluBI	AGCT	7 cut(s)	256, 363, 529, 557, 597, 689, 961
AluI	AGCT	7 cut(s)	256, 363, 529, 557, 597, 689, 961
Alw26I	GTCTC	5 cut(s)	220, 403, 634, 1010, 1103
Aor13HI	TCCGGA	1 cut(s)	1197
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	4 cut(s)	939, 950, 1006, 1244
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	1 cut(s)	1087
AsuHPI	GGTGA	4 cut(s)	646, 812, 1268, 1334
BauI	CACGAG	1 cut(s)	223
BbsI	GAAGAC	3 cut(s)	54, 495, 1333
BbvI	GCAGC	1 cut(s)	698
BccI	CCATC	4 cut(s)	563, 827, 914, 1110
BciT130I	CCWGG	4 cut(s)	576, 720, 822, 1412
BclI	TGATCA	1 cut(s)	1258
BcnI	CCSGG	1 cut(s)	1087
BcoDI	GTCTC	5 cut(s)	220, 403, 634, 1010, 1103
BfaI	CTAG	6 cut(s)	102, 360, 402, 438, 534, 995
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	438
BglI	GCCNNNNNGGC	1 cut(s)	1381
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
Bme1390I	CCNGG	5 cut(s)	576, 720, 822, 1087, 1412
BmgT120I	GGNCC	1 cut(s)	572
BmrFI	CCNGG	5 cut(s)	576, 720, 822, 1087, 1412
BmrI	ACTGGG	1 cut(s)	886
BmuI	ACTGGG	1 cut(s)	886
BpiI	GAAGAC	3 cut(s)	54, 495, 1333
BpmI	CTGGAG	2 cut(s)	345, 1323
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	4 cut(s)	230, 586, 608, 719
BpuMI	CCSGG	1 cut(s)	1087
BsaHI	GRCGYC	1 cut(s)	1350
BsaI	GGTCTC	2 cut(s)	220, 1103
BsaJI	CCNNGG	4 cut(s)	575, 865, 1345, 1379
BsaWI	WCCGGW	1 cut(s)	1197
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	920
Bse1I	ACTGG	1 cut(s)	881
BseAI	TCCGGA	1 cut(s)	1197
BseBI	CCWGG	4 cut(s)	576, 720, 822, 1412
BseDI	CCNNGG	4 cut(s)	575, 865, 1345, 1379
BseGI	GGATG	4 cut(s)	169, 471, 1079, 1273
BseLI	CCNNNNNNNGG	1 cut(s)	920
BseNI	ACTGG	1 cut(s)	881
BseRI	GAGGAG	2 cut(s)	589, 1041
BseXI	GCAGC	1 cut(s)	698
Bsh1236I	CGCG	1 cut(s)	892
BshFI	GGCC	1 cut(s)	574
BsiSI	CCGG	2 cut(s)	1086, 1198
BslFI	GGGAC	4 cut(s)	276, 893, 976, 1177
BslI	CCNNNNNNNGG	1 cut(s)	920
BsmAI	GTCTC	5 cut(s)	220, 403, 634, 1010, 1103
BsmFI	GGGAC	4 cut(s)	276, 893, 976, 1177
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	574
Bso31I	GGTCTC	2 cut(s)	220, 1103
Bsp13I	TCCGGA	1 cut(s)	1197
Bsp143I	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
Bsp19I	CCATGG	1 cut(s)	1345
BspACI	CCGC	2 cut(s)	837, 932
BspANI	GGCC	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	1197
BspFNI	CGCG	1 cut(s)	892
BspMAI	CTGCAG	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	1391
BspTNI	GGTCTC	2 cut(s)	220, 1103
BsrI	ACTGG	1 cut(s)	881
BssECI	CCNNGG	4 cut(s)	575, 865, 1345, 1379
BssMI	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
BssNI	GRCGYC	1 cut(s)	1350
BssSI	CACGAG	1 cut(s)	223
BssT1I	CCWWGG	3 cut(s)	865, 1345, 1379
Bst2BI	CACGAG	1 cut(s)	223
Bst2UI	CCWGG	4 cut(s)	576, 720, 822, 1412
Bst4CI	ACNGT	2 cut(s)	89, 884
Bst6I	CTCTTC	3 cut(s)	211, 589, 1391
BstACI	GRCGYC	1 cut(s)	1350
BstDEI	CTNAG	2 cut(s)	380, 690
BstDSI	CCRYGG	1 cut(s)	1345
BstEII	GGTNACC	1 cut(s)	1157
BstF5I	GGATG	4 cut(s)	169, 471, 1079, 1273
BstFNI	CGCG	1 cut(s)	892
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	6 cut(s)	27, 187, 454, 1261, 1331, 1358
BstMAI	GTCTC	5 cut(s)	220, 403, 634, 1010, 1103
BstMBI	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 1381
BstNI	CCWGG	4 cut(s)	576, 720, 822, 1412
BstPI	GGTNACC	1 cut(s)	1157
BstSCI	CCNGG	5 cut(s)	574, 718, 820, 1085, 1410
BstSFI	CTRYAG	1 cut(s)	195
BstUI	CGCG	1 cut(s)	892
BstV1I	GCAGC	1 cut(s)	698
BstV2I	GAAGAC	3 cut(s)	54, 495, 1333
BsuRI	GGCC	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	1345
BtsCI	GGATG	4 cut(s)	169, 471, 1079, 1273
BtsIMutI	CAGTG	1 cut(s)	706
CfoI	GCGC	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	572
CseI	GACGC	2 cut(s)	881, 1339
CsiI	ACCWGGT	2 cut(s)	820, 1410
Csp6I	GTAC	1 cut(s)	728
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	2 cut(s)	491, 1346
CviQI	GTAC	1 cut(s)	728
DdeI	CTNAG	2 cut(s)	380, 690
DpnI	GATC	6 cut(s)	26, 186, 453, 1260, 1330, 1357
DpnII	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
Eam1104I	CTCTTC	3 cut(s)	211, 589, 1391
EarI	CTCTTC	3 cut(s)	211, 589, 1391
EciI	GGCGGA	1 cut(s)	921
Eco130I	CCWWGG	3 cut(s)	865, 1345, 1379
Eco31I	GGTCTC	2 cut(s)	220, 1103
Eco32I	GATATC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	1375
Eco91I	GGTNACC	1 cut(s)	1157
EcoO65I	GGTNACC	1 cut(s)	1157
EcoRI	GAATTC	3 cut(s)	939, 950, 1244
EcoRII	CCWGG	4 cut(s)	574, 718, 820, 1410
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	3 cut(s)	865, 1345, 1379
ErhI	CCWWGG	3 cut(s)	865, 1345, 1379
FaeI	CATG	2 cut(s)	494, 1349
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	4 cut(s)	276, 893, 976, 1177
FatI	CATG	2 cut(s)	490, 1345
FauI	CCCGC	1 cut(s)	830
FauNDI	CATATG	1 cut(s)	1058
FbaI	TGATCA	1 cut(s)	1258
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	4 cut(s)	176, 478, 1066, 1280
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	6 cut(s)	102, 360, 402, 438, 534, 995
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	1 cut(s)	687
GsuI	CTGGAG	2 cut(s)	345, 1323
HaeII	RGCGCY	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	2 cut(s)	1086, 1198
HgaI	GACGC	2 cut(s)	881, 1339
HhaI	GCGC	1 cut(s)	437
Hin1I	GRCGYC	1 cut(s)	1350
Hin1II	CATG	2 cut(s)	494, 1349
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	3 cut(s)	788, 1069, 1273
HindII	GTYRAC	3 cut(s)	788, 1069, 1273
HinfI	GANTC	7 cut(s)	74, 494, 544, 907, 983, 1235, 1298
HpaI	GTTAAC	1 cut(s)	1069
HpaII	CCGG	2 cut(s)	1086, 1198
HphI	GGTGA	4 cut(s)	646, 812, 1268, 1334
Hpy166II	GTNNAC	5 cut(s)	775, 788, 1069, 1117, 1273
Hpy188I	TCNGA	5 cut(s)	82, 235, 1263, 1355, 1421
Hpy8I	GTNNAC	5 cut(s)	775, 788, 1069, 1117, 1273
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	5 cut(s)	154, 240, 625, 797, 1258
HpyCH4III	ACNGT	2 cut(s)	89, 884
HpyCH4IV	ACGT	2 cut(s)	479, 1286
HpyCH4V	TGCA	4 cut(s)	50, 197, 283, 847
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 1381
HpyF3I	CTNAG	2 cut(s)	380, 690
HpySE526I	ACGT	2 cut(s)	479, 1286
Hsp92I	GRCGYC	1 cut(s)	1350
Hsp92II	CATG	2 cut(s)	494, 1349
HspAI	GCGC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	1197
Ksp22I	TGATCA	1 cut(s)	1258
KspAI	GTTAAC	1 cut(s)	1069
Kzo9I	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
LguI	GCTCTTC	1 cut(s)	1391
LmnI	GCTCC	2 cut(s)	562, 602
Lsp1109I	GCAGC	1 cut(s)	698
MabI	ACCWGGT	2 cut(s)	820, 1410
MaeI	CTAG	6 cut(s)	102, 360, 402, 438, 534, 995
MaeII	ACGT	2 cut(s)	479, 1286
MaeIII	GTNAC	2 cut(s)	475, 1157
MalI	GATC	6 cut(s)	26, 186, 453, 1260, 1330, 1357
MboI	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
MfeI	CAATTG	1 cut(s)	915
MluI	ACGCGT	1 cut(s)	890
MlyI	GAGTC	2 cut(s)	503, 1307
MroI	TCCGGA	1 cut(s)	1197
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	4 cut(s)	978, 1068, 1142, 1289
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	2 cut(s)	1086, 1198
MspR9I	CCNGG	5 cut(s)	576, 720, 822, 1087, 1412
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	4 cut(s)	576, 720, 822, 1412
MvnI	CGCG	1 cut(s)	892
MwoI	GCNNNNNNNGC	2 cut(s)	563, 1381
NciI	CCSGG	1 cut(s)	1087
NcoI	CCATGG	1 cut(s)	1345
NdeI	CATATG	1 cut(s)	1058
NdeII	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
NlaIII	CATG	2 cut(s)	494, 1349
PciSI	GCTCTTC	1 cut(s)	1391
PctI	GAATGC	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	5 cut(s)	74, 544, 907, 983, 1235
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	1 cut(s)	688
PleI	GAGTC	2 cut(s)	502, 1306
PpsI	GAGTC	2 cut(s)	502, 1306
Psp6I	CCWGG	4 cut(s)	574, 718, 820, 1410
PspEI	GGTNACC	1 cut(s)	1157
PspGI	CCWGG	4 cut(s)	574, 718, 820, 1410
PspPI	GGNCC	1 cut(s)	572
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	729
RsaNI	GTAC	1 cut(s)	728
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	1391
SaqAI	TTAA	4 cut(s)	978, 1068, 1142, 1289
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	6 cut(s)	24, 184, 451, 1258, 1328, 1355
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	2 cut(s)	503, 1307
ScrFI	CCNGG	5 cut(s)	576, 720, 822, 1087, 1412
SexAI	ACCWGGT	2 cut(s)	820, 1410
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	4 cut(s)	245, 601, 623, 734
SmoI	CTYRAG	4 cut(s)	245, 601, 623, 734
SsiI	CCGC	2 cut(s)	837, 932
SspI	AATATT	1 cut(s)	1317
SspMI	CTAG	6 cut(s)	102, 360, 402, 438, 534, 995
StyD4I	CCNGG	5 cut(s)	574, 718, 820, 1085, 1410
StyI	CCWWGG	3 cut(s)	865, 1345, 1379
TaaI	ACNGT	2 cut(s)	89, 884
TaiI	ACGT	2 cut(s)	482, 1289
TaqI	TCGA	3 cut(s)	895, 910, 937
TfiI	GAWTC	5 cut(s)	74, 544, 907, 983, 1235
Tru1I	TTAA	4 cut(s)	978, 1068, 1142, 1289
Tru9I	TTAA	4 cut(s)	978, 1068, 1142, 1289
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	1 cut(s)	686
TspDTI	ATGAA	9 cut(s)	19, 81, 87, 139, 146, 228, 482, 606, 1047
TspRI	CASTG	1 cut(s)	706
Van91I	CCANNNNNTGG	1 cut(s)	920
XapI	RAATTY	4 cut(s)	939, 950, 1006, 1244
XbaI	TCTAGA	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	6 cut(s)	102, 360, 402, 438, 534, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.