Rh2DG473600
ERF Family

2OG-Fe(II) oxygenase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
68559506 .. 68563341
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG473600.1

Sequence Viewer

Length: 1905 bp
ATGTGGATCGGTCAAAATCGGAAGGAATGGCGTCCATCTCAAAAAAAAGATGCACTTTCTGAAGCTGAGAAACAGAAGGAATGCCGTCCATCTGAAAGAAAATTGGAAGGAATGGCGATCAAACAGCAGCCTGGAGCTGGAATTCATGGACCTTCACCTAATGACTTTGCTGGTAATAAGGAGGGTTCGTCAACAGGTGAAATGGGAAGTCCCCAGGACATGTTTCCGTGTAGCTCTTCAAAGCATCCTGAGCAAAAACCTGTCTGGAGTCAAGAAAATCGGAATGAATGGCCTCCATCTGAAAGAAAATTGGAAGGAATGGCGATCAAACAGCAGCCTGGAGCTGGAATTCATGGACCTTCTGCTAATGACTTTTCTGGTAATAAGGAGGGTTCGTCAACAGATGAAATGGGAAGTCCCCAGGACATGTTTCCGTGTAGCTCTTCAAAGCATCCTGAGCATAAACCTGTCTGGAGTCAAGAAAATCAGAAGGAACGGCATCCATCTGAAAGAAAAGATGCACTTTCTGAAGCTGAGAAACAGAAGGAATGGCCTCCATCTGAAAGAAAATTGGAAGGAATGGCGATCAAACAGCAGCCTGGAGCTGGAATTCATGGACCTTCTGCTAATGACTTTTCTGGTAACAAGGAGGGTTCGTCAACAGGTGAAATGGGAAGTCCCCAGGACATGTTTCCGTGTAGCTCTTCAAAGCATCCTGAGCATAAACCTGTCTGGAGTCAAGAAAATCAGAAGGAACGGCATCCATCTGAAAGAAAAGATGCACTTTCTCATGCTGTGGAACTGAAGGAAGGACACAACTCAACTGAGTTTGTGGAAGTTAATTCAAAAGAAGTAAAGCGCTCAGTTGCCTCAGATTCGGGCCATATAGGGGACATTTCTTCATTGTCTAGTCTTAATCTTTCCCACAATTTGCATAAGGGAGTAGAGAGAATGCAGATTGGAGAAAACTTTAGGAAGATGACAAGGGGTAGTGACAATCATATGCAATCTAAATCAGAAGCCAAAGACAAGCCGTTCCCTATCAAGAGTCCTATAAGTTCATTTGGCCATCAAAAACCAGAGCTTTCTGAACACAAAGCAGTAGACTCTTCTTTTGATTTGTGCCCAACCAAAGCCAGCGGTGCTGTTACTCTAAAGACTTCTCTTCTTGTACAGAATAGAGAAAGGAAGAATGAAATCAAGCGCTCCATGGAACAACCAATTGAAATTGTTTTACAGTCTGGAATGGTTCTTCTTAAAAGTTACATTTCTACCAGTGACCAGATCAAGATAGTGAAGCTATGCCGAGACCTGGGTTTGGGTCCTGGAGGTTTCTACAAACCTGGTTACCGTGATGGAGCAAAACTGAATTTGATGATGATGTGCCTTGGTAAGAATTGGGATCCTGAGACTAGCAAATATGGAGATCACCGCCCTCATGATGGTGCTAAACCTCCATTTATTCCTGTTGATTTCTTTCGGTTGGTTGAAAATGCAATAAAAGACAGCCATTCCCTTATCAGAAAGGATTCTAAAGCTAGCAATTCTGAATACATACTTCCTCGGATGACCCCAGACATTTGCCTTGTGAACTTCTACTCATCAACTGGGCGACTAGGTCTCCATCAGGATCGTGATGAAAGTGAACAAAGTCTCCGTAAGCAGTTGCCTGTTGTCTCTTTTTCCATTGGAGATGCTGCAGAATTCTTGTATGGTGATCAAAGGGATGTTGAACTAGCAAAGAAGATTACACTGGAATCTGGAGATGTTCTCATATTTGGTGGAGAATCAAGACATATCTTTCACGGTGTAGCTTCTATACAGCCAAATACTGCTCCTAAGACCCTACTGGAAGAAACAAAGCTCCAGCCTGGCCGCCTGAATCTTACTTTCAGAAAGTATTGA

Protein Analysis

634

Amino Acids

70.62

Weight (kDa)

7.99

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_2 PF13532 415 - 632 2.6e-45 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1104
AciI CCGC 3 cut(s) 1140, 1432, 1876
AclWI GGATC 4 cut(s) 14, 1397, 1410, 1638
AcoI YGGCCR 2 cut(s) 1066, 1873
AcsI RAATTY 5 cut(s) 141, 348, 609, 1369, 1703
AcuI CTGAAG 3 cut(s) 81, 549, 824
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 1 cut(s) 1173
AfeI AGCGCT 2 cut(s) 860, 1205
AfiI CCNNNNNNNGG 7 cut(s) 137, 344, 605, 889, 1312, 1318, 1442
AflIII ACRYGT 3 cut(s) 219, 426, 687
AgsI TTSAA 7 cut(s) 240, 447, 708, 846, 1226, 1490, 1733
AloI GAACNNNNNNTCC 2 cut(s) 1638, 1670
Alw26I GTCTC 5 cut(s) 1302, 1403, 1625, 1658, 1681
AlwI GGATC 4 cut(s) 14, 1397, 1410, 1638
Aor51HI AGCGCT 2 cut(s) 860, 1205
AoxI GGCC 5 cut(s) 290, 551, 880, 1066, 1873
ApeKI GCWGC 4 cut(s) 127, 334, 595, 1697
ApoI RAATTY 5 cut(s) 141, 348, 609, 1369, 1703
ArsI GACNNNNNNTTYG 2 cut(s) 1097, 1129
Asp700I GAANNNNTTC 1 cut(s) 1528
AspLEI GCGC 2 cut(s) 861, 1206
AspS9I GGNCC 5 cut(s) 149, 356, 617, 880, 1322
AsuHPI GGTGA 5 cut(s) 147, 209, 677, 1421, 1727
AsuNHI GCTAGC 1 cut(s) 1538
AvaII GGWCC 4 cut(s) 149, 356, 617, 1322
BaeGI GKGCMC 1 cut(s) 1127
BalI TGGCCA 1 cut(s) 1068
BamHI GGATCC 1 cut(s) 1402
BbvI GCAGC 4 cut(s) 139, 346, 607, 1684
BceAI ACGGC 4 cut(s) 69, 512, 773, 1018
BclI TGATCA 1 cut(s) 1717
BcoDI GTCTC 5 cut(s) 1302, 1403, 1625, 1658, 1681
BfaI CTAG 5 cut(s) 909, 1413, 1539, 1616, 1736
BfmI CTRYAG 1 cut(s) 1698
BfoI RGCGCY 2 cut(s) 862, 1207
BisI GCNGC 5 cut(s) 128, 335, 596, 1698, 1876
BlsI GCNGC 5 cut(s) 129, 336, 597, 1699, 1877
Bme18I GGWCC 4 cut(s) 149, 356, 617, 1322
BmgT120I GGNCC 5 cut(s) 149, 356, 617, 880, 1322
BmiI GGNNCC 2 cut(s) 1323, 1404
BmrI ACTGGG 1 cut(s) 1617
BmsI GCATC 9 cut(s) 40, 253, 460, 508, 508, 721, 769, 769, 1684
BmtI GCTAGC 1 cut(s) 1542
BmuI ACTGGG 1 cut(s) 1617
BplI GAGNNNNNCTC 2 cut(s) 1755, 1787
BpmI CTGGAG 9 cut(s) 153, 286, 360, 493, 621, 754, 1347, 1782, 1850
Bpu10I CCTNAGC 3 cut(s) 249, 456, 717
BsaHI GRCGYC 1 cut(s) 31
BsaI GGTCTC 2 cut(s) 1302, 1625
BsaJI CCNNGG 7 cut(s) 213, 420, 681, 1209, 1312, 1387, 1562
Bsc4I CCNNNNNNNGG 7 cut(s) 137, 344, 605, 889, 1312, 1318, 1442
Bse1I ACTGG 4 cut(s) 1275, 1612, 1758, 1854
BseDI CCNNGG 7 cut(s) 213, 420, 681, 1209, 1312, 1387, 1562
BseGI GGATG 7 cut(s) 244, 451, 499, 712, 760, 1572, 1732
BseLI CCNNNNNNNGG 7 cut(s) 137, 344, 605, 889, 1312, 1318, 1442
BseMII CTCAG 9 cut(s) 57, 240, 447, 525, 708, 816, 876, 885, 1398
BseNI ACTGG 4 cut(s) 1275, 1612, 1758, 1854
BseSI GKGCMC 1 cut(s) 1127
BseXI GCAGC 4 cut(s) 139, 346, 607, 1684
BshFI GGCC 5 cut(s) 292, 553, 882, 1068, 1875
BslFI GGGAC 4 cut(s) 195, 402, 663, 905
BslI CCNNNNNNNGG 7 cut(s) 137, 344, 605, 889, 1312, 1318, 1442
BsmAI GTCTC 5 cut(s) 1302, 1403, 1625, 1658, 1681
BsmFI GGGAC 4 cut(s) 195, 402, 663, 905
BsmI GAATGC 2 cut(s) 86, 957
BsnI GGCC 5 cut(s) 292, 553, 882, 1068, 1875
Bso31I GGTCTC 2 cut(s) 1302, 1625
Bsp1286I GDGCHC 1 cut(s) 1127
Bsp1407I TGTACA 1 cut(s) 1171
Bsp143I GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
Bsp19I CCATGG 1 cut(s) 1209
BspACI CCGC 3 cut(s) 1140, 1432, 1876
BspANI GGCC 5 cut(s) 292, 553, 882, 1068, 1875
BspCNI CTCAG 9 cut(s) 58, 241, 448, 526, 709, 817, 875, 884, 1399
BspHI TCATGA 1 cut(s) 1438
BspLI GGNNCC 2 cut(s) 1323, 1404
BspMAI CTGCAG 1 cut(s) 1702
BspOI GCTAGC 1 cut(s) 1542
BspPI GGATC 4 cut(s) 14, 1397, 1410, 1638
BspQI GCTCTTC 3 cut(s) 241, 448, 709
BspTNI GGTCTC 2 cut(s) 1302, 1625
BsrGI TGTACA 1 cut(s) 1171
BsrI ACTGG 4 cut(s) 1275, 1612, 1758, 1854
BssECI CCNNGG 7 cut(s) 213, 420, 681, 1209, 1312, 1387, 1562
BssMI GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 2 cut(s) 1209, 1387
Bst4CI ACNGT 3 cut(s) 1239, 1352, 1808
Bst6I CTCTTC 5 cut(s) 241, 448, 709, 1114, 1170
BstACI GRCGYC 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 1171
BstC8I GCNNGC 2 cut(s) 1138, 1540
BstDSI CCRYGG 1 cut(s) 1209
BstEII GGTNACC 1 cut(s) 1346
BstF5I GGATG 7 cut(s) 244, 451, 499, 712, 760, 1572, 1732
BstH2I RGCGCY 2 cut(s) 862, 1207
BstHHI GCGC 2 cut(s) 861, 1206
BstKTI GATC 9 cut(s) 9, 120, 327, 588, 1287, 1405, 1429, 1633, 1720
BstMAI GTCTC 5 cut(s) 1302, 1403, 1625, 1658, 1681
BstMBI GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
BstMWI GCNNNNNNNGC 4 cut(s) 250, 457, 718, 1142
BstNSI RCATGY 3 cut(s) 223, 430, 691
BstPI GGTNACC 1 cut(s) 1346
BstSFI CTRYAG 1 cut(s) 1698
BstSLI GKGCMC 1 cut(s) 1127
BstV1I GCAGC 4 cut(s) 139, 346, 607, 1684
BstX2I RGATCY 1 cut(s) 1402
BstYI RGATCY 1 cut(s) 1402
BsuRI GGCC 5 cut(s) 292, 553, 882, 1068, 1875
BtgI CCRYGG 1 cut(s) 1209
BtsCI GGATG 7 cut(s) 244, 451, 499, 712, 760, 1572, 1732
BtsIMutI CAGTG 2 cut(s) 1282, 1751
Cac8I GCNNGC 2 cut(s) 1138, 1540
CciI TCATGA 1 cut(s) 1438
CfoI GCGC 2 cut(s) 861, 1206
Cfr13I GGNCC 5 cut(s) 149, 356, 617, 880, 1322
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 1342
Csp6I GTAC 1 cut(s) 1172
CviAII CATG 9 cut(s) 146, 220, 353, 427, 614, 688, 791, 1210, 1439
CviQI GTAC 1 cut(s) 1172
DpnI GATC 9 cut(s) 8, 119, 326, 587, 1286, 1404, 1428, 1632, 1719
DpnII GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
EaeI YGGCCR 2 cut(s) 1066, 1873
Eam1104I CTCTTC 5 cut(s) 241, 448, 709, 1114, 1170
EarI CTCTTC 5 cut(s) 241, 448, 709, 1114, 1170
Eco130I CCWWGG 2 cut(s) 1209, 1387
Eco31I GGTCTC 2 cut(s) 1302, 1625
Eco47I GGWCC 4 cut(s) 149, 356, 617, 1322
Eco47III AGCGCT 2 cut(s) 860, 1205
Eco57I CTGAAG 3 cut(s) 81, 549, 824
Eco91I GGTNACC 1 cut(s) 1346
EcoO109I RGGNCCY 1 cut(s) 1322
EcoO65I GGTNACC 1 cut(s) 1346
EcoRI GAATTC 4 cut(s) 141, 348, 609, 1703
EcoT14I CCWWGG 2 cut(s) 1209, 1387
ErhI CCWWGG 2 cut(s) 1209, 1387
FaeI CATG 9 cut(s) 149, 223, 356, 430, 617, 691, 794, 1213, 1442
FalI AAGNNNNNCTT 6 cut(s) 39, 71, 507, 539, 768, 800
FaqI GGGAC 4 cut(s) 195, 402, 663, 905
FatI CATG 9 cut(s) 145, 219, 352, 426, 613, 687, 790, 1209, 1438
FauNDI CATATG 1 cut(s) 1002
FbaI TGATCA 1 cut(s) 1717
FblI GTMKAC 1 cut(s) 1104
Fnu4HI GCNGC 5 cut(s) 128, 335, 596, 1698, 1876
FokI GGATG 7 cut(s) 231, 438, 486, 699, 747, 1579, 1739
Fsp4HI GCNGC 5 cut(s) 128, 335, 596, 1698, 1876
FspBI CTAG 5 cut(s) 909, 1413, 1539, 1616, 1736
GlaI GCGC 2 cut(s) 860, 1205
GluI GCNGC 5 cut(s) 128, 335, 596, 1698, 1876
GsuI CTGGAG 9 cut(s) 153, 286, 360, 493, 621, 754, 1347, 1782, 1850
HaeII RGCGCY 2 cut(s) 862, 1207
HaeIII GGCC 5 cut(s) 292, 553, 882, 1068, 1875
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 861, 1206
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 9 cut(s) 149, 223, 356, 430, 617, 691, 794, 1213, 1442
Hin6I GCGC 2 cut(s) 859, 1204
HinP1I GCGC 2 cut(s) 859, 1204
HincII GTYRAC 3 cut(s) 192, 399, 660
HindII GTYRAC 3 cut(s) 192, 399, 660
HphI GGTGA 5 cut(s) 147, 209, 677, 1421, 1727
Hpy166II GTNNAC 6 cut(s) 192, 399, 660, 1105, 1591, 1646
Hpy8I GTNNAC 6 cut(s) 192, 399, 660, 1105, 1591, 1646
HpyCH4III ACNGT 3 cut(s) 1239, 1352, 1808
HpyCH4V TGCA 8 cut(s) 53, 521, 782, 934, 955, 1006, 1496, 1700
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 457, 718, 1142
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 9 cut(s) 149, 223, 356, 430, 617, 691, 794, 1213, 1442
HspAI GCGC 2 cut(s) 859, 1204
Ksp22I TGATCA 1 cut(s) 1717
Kzo9I GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
LguI GCTCTTC 3 cut(s) 241, 448, 709
LmnI GCTCC 7 cut(s) 134, 341, 602, 1211, 1358, 1840, 1869
Lsp1109I GCAGC 4 cut(s) 139, 346, 607, 1684
LweI GCATC 9 cut(s) 40, 253, 460, 508, 508, 721, 769, 769, 1684
MabI ACCWGGT 1 cut(s) 1342
MaeI CTAG 5 cut(s) 909, 1413, 1539, 1616, 1736
MaeIII GTNAC 6 cut(s) 641, 992, 1147, 1262, 1277, 1346
MalI GATC 9 cut(s) 8, 119, 326, 587, 1286, 1404, 1428, 1632, 1719
MboI GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
MfeI CAATTG 1 cut(s) 1221
MflI RGATCY 1 cut(s) 1402
MhlI GDGCHC 1 cut(s) 1127
MlsI TGGCCA 1 cut(s) 1068
MluNI TGGCCA 1 cut(s) 1068
MlyI GAGTC 5 cut(s) 277, 484, 745, 1057, 1100
Mox20I TGGCCA 1 cut(s) 1068
MroXI GAANNNNTTC 1 cut(s) 1528
MscI TGGCCA 1 cut(s) 1068
MseI TTAA 3 cut(s) 840, 915, 1257
MslI CAYNNNNRTG 1 cut(s) 1443
Msp20I TGGCCA 1 cut(s) 1068
MspA1I CMGCKG 1 cut(s) 1140
MunI CAATTG 1 cut(s) 1221
Mva1269I GAATGC 2 cut(s) 86, 957
MwoI GCNNNNNNNGC 4 cut(s) 250, 457, 718, 1142
NcoI CCATGG 1 cut(s) 1209
NdeI CATATG 1 cut(s) 1002
NdeII GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
NheI GCTAGC 1 cut(s) 1538
NlaIII CATG 9 cut(s) 149, 223, 356, 430, 617, 691, 794, 1213, 1442
NlaIV GGNNCC 2 cut(s) 1323, 1404
NmeAIII GCCGAG 1 cut(s) 1331
NmuCI GTSAC 2 cut(s) 992, 1277
NspI RCATGY 3 cut(s) 223, 430, 691
PagI TCATGA 1 cut(s) 1438
PciI ACATGT 3 cut(s) 219, 426, 687
PciSI GCTCTTC 3 cut(s) 241, 448, 709
PctI GAATGC 2 cut(s) 86, 957
PdmI GAANNNNTTC 1 cut(s) 1528
PfeI GAWTC 5 cut(s) 875, 1529, 1757, 1787, 1882
PflFI GACNNNGTC 1 cut(s) 1617
PfoI TCCNGGA 1 cut(s) 1324
PkrI GCNGC 5 cut(s) 129, 336, 597, 1699, 1877
PleI GAGTC 5 cut(s) 276, 483, 744, 1056, 1100
PpsI GAGTC 5 cut(s) 276, 483, 744, 1056, 1100
PpuMI RGGWCCY 1 cut(s) 1322
PscI ACATGT 3 cut(s) 219, 426, 687
Psp5II RGGWCCY 1 cut(s) 1322
PspEI GGTNACC 1 cut(s) 1346
PspN4I GGNNCC 2 cut(s) 1323, 1404
PspPI GGNCC 5 cut(s) 149, 356, 617, 880, 1322
PspPPI RGGWCCY 1 cut(s) 1322
PstI CTGCAG 1 cut(s) 1702
PsuI RGATCY 1 cut(s) 1402
PsyI GACNNNGTC 1 cut(s) 1617
RsaI GTAC 1 cut(s) 1173
RsaNI GTAC 1 cut(s) 1172
RseI CAYNNNNRTG 1 cut(s) 1443
SapI GCTCTTC 3 cut(s) 241, 448, 709
SaqAI TTAA 3 cut(s) 840, 915, 1257
SatI GCNGC 5 cut(s) 128, 335, 596, 1698, 1876
Sau3AI GATC 9 cut(s) 6, 117, 324, 585, 1284, 1402, 1426, 1630, 1717
Sau96I GGNCC 5 cut(s) 149, 356, 617, 880, 1322
SchI GAGTC 5 cut(s) 277, 484, 745, 1057, 1100
SduI GDGCHC 1 cut(s) 1127
SexAI ACCWGGT 1 cut(s) 1342
SfaNI GCATC 9 cut(s) 40, 253, 460, 508, 508, 721, 769, 769, 1684
SfcI CTRYAG 1 cut(s) 1698
SinI GGWCC 4 cut(s) 149, 356, 617, 1322
SmiMI CAYNNNNRTG 1 cut(s) 1443
SsiI CCGC 3 cut(s) 1140, 1432, 1876
SspMI CTAG 5 cut(s) 909, 1413, 1539, 1616, 1736
StyI CCWWGG 2 cut(s) 1209, 1387
TaaI ACNGT 3 cut(s) 1239, 1352, 1808
TatI WGTACW 1 cut(s) 1171
TauI GCSGC 1 cut(s) 1878
TfiI GAWTC 5 cut(s) 875, 1529, 1757, 1787, 1882
Tru1I TTAA 3 cut(s) 840, 915, 1257
Tru9I TTAA 3 cut(s) 840, 915, 1257
TscAI CASTG 2 cut(s) 1282, 1758
TseFI GTSAC 2 cut(s) 992, 1277
TseI GCWGC 4 cut(s) 127, 334, 595, 1697
Tsp45I GTSAC 2 cut(s) 992, 1277
TspDTI ATGAA 9 cut(s) 134, 300, 341, 420, 602, 891, 1050, 1209, 1653
TspGWI ACGGA 4 cut(s) 216, 423, 684, 1646
TspRI CASTG 2 cut(s) 1282, 1758
Tth111I GACNNNGTC 1 cut(s) 1617
VpaK11BI GGWCC 4 cut(s) 149, 356, 617, 1322
XapI RAATTY 5 cut(s) 141, 348, 609, 1369, 1703
XceI RCATGY 3 cut(s) 223, 430, 691
XmiI GTMKAC 1 cut(s) 1104
XmnI GAANNNNTTC 1 cut(s) 1528
XspI CTAG 5 cut(s) 909, 1413, 1539, 1616, 1736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.