FvH4_6g35240
ERF Family

2OG-Fe(II) oxygenase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
27847507 .. 27850562
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35240.t2

Sequence Viewer

Length: 1398 bp
ATGAATCGCGATCAAGGTCGAGGATGGAGCCCACGAGGCGGACGAGGCCCTGCGAATCGCGGCCAAGGCCCTGCGAACCCCCGAGACTCTCCACATTCTCAGCCACATCGCTTTGCTCCTCCTGGAGGTGGAATTTACGGACCTTCTGCTAATGACTTTTCGGGTAATAAGGAGGGTGTGTCGACAGGTGAAATGGGAAGTCCCCGGGACGAGTTTCTGTGTAGCTCTTCAAAGTATACCAAGCATAAACCTACCAGTAGTTCAGAACCGTCTGAAAGAAAAGATGCTGTTTCTTGTGCTGATAGACTGAAGGAGGGACATAATTCAACTGAGCCTGTGGAAATTAATCCAAAAGAAGTGAAGTGCCCGGTTGCCTCCAATTCAGGCTGTAAAGGGGACATTTCTCAATTGTCTACTCTTGATCTTTCCCAAAATTTGCATAAGGGAGTAGAGAGAATGCAGATTGGAGAGAACTCTTGGAAGATGATAGGGAATAGTGACAACTCTATGCCATCTAAATCTGAACCCAAAGATGAGCCTTTCGTAATCAAGAGTCAATTTGGCCATCAGAAACCAGAGCTTTCTGAAAACAAAGCTGTTGACCCTCCTTTTGATTTGTGCCCAACCAAAGCTGGTGGTGCTGTTAAGCTAAAGACTTCTCTGCTTGTAAGGAATAGAGAAAGGAGGAATGAAATCAAGTGCTCCATGGAACAACCAAGTGAAATTTTACAGTCTGGATTGGTTCTTCTTAAAAGTTACATTTCTCCAAGTGACCAGATCATGATAGTGAAGCTATGCCGAGACTTGGGTTTGGGTCCTGGAGGTTTCTATCAACCTGGTTACCGTGATGGAGCAAAGCTTAATTTGAAGATGATGTGCCTTGGTAAGAATTGGGATCCTGAGACTAGCAAATATGGAGATCACCGCCCTCATGATGGTGATAAACCTCCATGTATTCCTGGTGTTTTCTTTCAGTTAGTTGAAAATGCACTCAAGGAATCCCATTCCCTTATTAAAAAGACCACTAAAGCTTGCAAGTCTGAAGACATACTTCCTCCGATGACCCCAGACATTTGCCTTGTGAACTTCTACTCATCAACTGGGCGACTAGGTCTCCATCAGGATCGTGATGAAAGTGATCAAAGTCTCAAGAGAGGTTTGCCTGTTGTCTCTTTTTCCATTGGAGATGCTGCTGAATTCTTGTATGGTGATCAAAGGGGTGTTGAACTGGCTAAGAAGGTAACACTGAAATCAGGAGATGTTCTTATATTTGGTGGACAATCAAGACATATCTTTCACGGTGTAGAATCTATACAGCAAAATACTGCTCCTACGGCCTTACTGGATGCAACAAATCTCCGGCCTGGCCGCCTGAATCTTACTTTCAGAGAGTATTGA

Protein Analysis

466

Amino Acids

50.91

Weight (kDa)

8.62

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy_2 PF13532 246 - 463 9e-46 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 182, 236, 413
AccII CGCG 2 cut(s) 9, 60
AciI CCGC 4 cut(s) 39, 60, 925, 1369
AclWI GGATC 3 cut(s) 890, 903, 1131
AcoI YGGCCR 3 cut(s) 61, 562, 1366
AcsI RAATTY 4 cut(s) 132, 433, 723, 1196
AcuI CTGAAG 2 cut(s) 329, 1062
AfiI CCNNNNNNNGG 5 cut(s) 38, 125, 128, 805, 935
AgsI TTSAA 5 cut(s) 231, 327, 868, 983, 1226
AjnI CCWGG 5 cut(s) 121, 817, 835, 958, 1363
AluBI AGCT 8 cut(s) 225, 580, 596, 632, 649, 793, 859, 1031
AluI AGCT 8 cut(s) 225, 580, 596, 632, 649, 793, 859, 1031
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 6 cut(s) 78, 795, 896, 1118, 1151, 1174
AlwI GGATC 3 cut(s) 890, 903, 1131
Ama87I CYCGRG 2 cut(s) 81, 204
AoxI GGCC 7 cut(s) 46, 61, 67, 562, 1335, 1361, 1366
ApeKI GCWGC 1 cut(s) 1190
ApoI RAATTY 4 cut(s) 132, 433, 723, 1196
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AseI ATTAAT 1 cut(s) 345
AspS9I GGNCC 4 cut(s) 47, 68, 140, 815
AsuC2I CCSGG 3 cut(s) 205, 206, 368
AsuHPI GGTGA 4 cut(s) 200, 914, 950, 1220
AvaI CYCGRG 2 cut(s) 81, 204
AvaII GGWCC 2 cut(s) 140, 815
BaeGI GKGCMC 2 cut(s) 368, 623
BalI TGGCCA 1 cut(s) 564
BamHI GGATCC 1 cut(s) 895
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 1050
Bbv12I GWGCWC 1 cut(s) 704
BbvI GCAGC 1 cut(s) 1177
BccI CCATC 6 cut(s) 18, 520, 573, 842, 929, 1125
BceAI ACGGC 1 cut(s) 1350
BciT130I CCWGG 5 cut(s) 123, 819, 837, 960, 1365
BclI TGATCA 2 cut(s) 1138, 1210
BcnI CCSGG 3 cut(s) 205, 206, 368
BcoDI GTCTC 6 cut(s) 78, 795, 896, 1118, 1151, 1174
BfaI CTAG 2 cut(s) 906, 1109
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 3 cut(s) 61, 1191, 1369
BlsI GCNGC 3 cut(s) 62, 1192, 1370
Bme1390I CCNGG 8 cut(s) 123, 205, 206, 368, 819, 837, 960, 1365
Bme18I GGWCC 2 cut(s) 140, 815
BmeT110I CYCGRG 2 cut(s) 81, 204
BmgT120I GGNCC 4 cut(s) 47, 68, 140, 815
BmiI GGNNCC 3 cut(s) 29, 816, 897
BmrFI CCNGG 8 cut(s) 123, 205, 206, 368, 819, 837, 960, 1365
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 3 cut(s) 274, 1177, 1336
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 1 cut(s) 1050
BpmI CTGGAG 2 cut(s) 144, 840
BpuEI CTTGAG 2 cut(s) 977, 1133
BpuMI CCSGG 3 cut(s) 205, 206, 368
BsaI GGTCTC 1 cut(s) 1118
BsaJI CCNNGG 5 cut(s) 64, 203, 204, 705, 880
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 1098, 1128
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 125, 128, 805, 935
Bse1I ACTGG 4 cut(s) 255, 1105, 1233, 1347
BseBI CCWGG 5 cut(s) 123, 819, 837, 960, 1365
BseDI CCNNGG 5 cut(s) 64, 203, 204, 705, 880
BseGI GGATG 2 cut(s) 29, 1351
BseLI CCNNNNNNNGG 5 cut(s) 38, 125, 128, 805, 935
BseMII CTCAG 3 cut(s) 113, 321, 891
BseNI ACTGG 4 cut(s) 255, 1105, 1233, 1347
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 2 cut(s) 368, 623
BseXI GCAGC 1 cut(s) 1177
Bsh1236I CGCG 2 cut(s) 9, 60
BshFI GGCC 7 cut(s) 48, 63, 69, 564, 1337, 1363, 1368
BsiHKAI GWGCWC 1 cut(s) 704
BsiHKCI CYCGRG 2 cut(s) 81, 204
BsiSI CCGG 3 cut(s) 205, 368, 1360
BslFI GGGAC 4 cut(s) 186, 221, 330, 410
BslI CCNNNNNNNGG 5 cut(s) 38, 125, 128, 805, 935
BsmAI GTCTC 6 cut(s) 78, 795, 896, 1118, 1151, 1174
BsmFI GGGAC 4 cut(s) 186, 221, 330, 410
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 7 cut(s) 48, 63, 69, 564, 1337, 1363, 1368
Bso31I GGTCTC 1 cut(s) 1118
BsoBI CYCGRG 2 cut(s) 81, 204
Bsp1286I GDGCHC 4 cut(s) 32, 368, 623, 704
Bsp143I GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
Bsp19I CCATGG 1 cut(s) 705
Bsp68I TCGCGA 1 cut(s) 9
BspACI CCGC 4 cut(s) 39, 60, 925, 1369
BspANI GGCC 7 cut(s) 48, 63, 69, 564, 1337, 1363, 1368
BspCNI CTCAG 3 cut(s) 112, 322, 892
BspFNI CGCG 2 cut(s) 9, 60
BspHI TCATGA 2 cut(s) 780, 931
BspLI GGNNCC 3 cut(s) 29, 816, 897
BspPI GGATC 3 cut(s) 890, 903, 1131
BspQI GCTCTTC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 1118
BsrI ACTGG 4 cut(s) 255, 1105, 1233, 1347
BssECI CCNNGG 5 cut(s) 64, 203, 204, 705, 880
BssMI GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
BssNAI GTATAC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 3 cut(s) 64, 705, 880
Bst1107I GTATAC 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 5 cut(s) 123, 819, 837, 960, 1365
Bst4CI ACNGT 4 cut(s) 270, 732, 845, 1301
Bst6I CTCTTC 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 1033
BstDEI CTNAG 4 cut(s) 99, 330, 900, 1233
BstDSI CCRYGG 1 cut(s) 705
BstEII GGTNACC 1 cut(s) 839
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 29, 1351
BstFNI CGCG 2 cut(s) 9, 60
BstKTI GATC 8 cut(s) 13, 424, 780, 898, 922, 1126, 1141, 1213
BstMAI GTCTC 6 cut(s) 78, 795, 896, 1118, 1151, 1174
BstMBI GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
BstMWI GCNNNNNNNGC 5 cut(s) 36, 45, 66, 638, 1334
BstNI CCWGG 5 cut(s) 123, 819, 837, 960, 1365
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 8 cut(s) 121, 203, 204, 366, 817, 835, 958, 1363
BstSLI GKGCMC 2 cut(s) 368, 623
BstUI CGCG 2 cut(s) 9, 60
BstV1I GCAGC 1 cut(s) 1177
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 1 cut(s) 895
BstYI RGATCY 1 cut(s) 895
BstZ17I GTATAC 1 cut(s) 237
BsuRI GGCC 7 cut(s) 48, 63, 69, 564, 1337, 1363, 1368
BtgI CCRYGG 1 cut(s) 705
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 2 cut(s) 29, 1351
BtsIMutI CAGTG 1 cut(s) 1244
BtuMI TCGCGA 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 1033
CciI TCATGA 2 cut(s) 780, 931
Cfr13I GGNCC 4 cut(s) 47, 68, 140, 815
Cfr9I CCCGGG 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 835
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviAII CATG 4 cut(s) 706, 781, 932, 951
DdeI CTNAG 4 cut(s) 99, 330, 900, 1233
DpnI GATC 8 cut(s) 12, 423, 779, 897, 921, 1125, 1140, 1212
DpnII GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
EaeI YGGCCR 3 cut(s) 61, 562, 1366
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
EciI GGCGGA 1 cut(s) 54
Eco130I CCWWGG 3 cut(s) 64, 705, 880
Eco24I GRGCYC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 1118
Eco47I GGWCC 2 cut(s) 140, 815
Eco57I CTGAAG 2 cut(s) 329, 1062
Eco88I CYCGRG 2 cut(s) 81, 204
Eco91I GGTNACC 1 cut(s) 839
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoO109I RGGNCCY 3 cut(s) 47, 68, 815
EcoO65I GGTNACC 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 1196
EcoRII CCWGG 5 cut(s) 121, 817, 835, 958, 1363
EcoT14I CCWWGG 3 cut(s) 64, 705, 880
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 3 cut(s) 64, 705, 880
FaeI CATG 4 cut(s) 709, 784, 935, 954
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 4 cut(s) 186, 221, 330, 410
FatI CATG 4 cut(s) 705, 780, 931, 950
FbaI TGATCA 2 cut(s) 1138, 1210
FblI GTMKAC 3 cut(s) 182, 236, 413
Fnu4HI GCNGC 3 cut(s) 61, 1191, 1369
FokI GGATG 2 cut(s) 36, 1358
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 61, 1191, 1369
FspBI CTAG 2 cut(s) 906, 1109
GluI GCNGC 3 cut(s) 61, 1191, 1369
GsuI CTGGAG 2 cut(s) 144, 840
HaeIII GGCC 7 cut(s) 48, 63, 69, 564, 1337, 1363, 1368
HapII CCGG 3 cut(s) 205, 368, 1360
Hin1II CATG 4 cut(s) 709, 784, 935, 954
HincII GTYRAC 2 cut(s) 183, 601
HindII GTYRAC 2 cut(s) 183, 601
HindIII AAGCTT 2 cut(s) 857, 1029
HinfI GANTC 7 cut(s) 4, 55, 86, 553, 998, 1307, 1375
HpaII CCGG 3 cut(s) 205, 368, 1360
HphI GGTGA 4 cut(s) 200, 914, 950, 1220
Hpy166II GTNNAC 6 cut(s) 183, 237, 414, 601, 1084, 1277
Hpy188I TCNGA 8 cut(s) 265, 274, 523, 570, 586, 1042, 1059, 1388
Hpy8I GTNNAC 6 cut(s) 183, 237, 414, 601, 1084, 1277
HpyAV CCTTC 3 cut(s) 153, 304, 1231
HpyCH4III ACNGT 4 cut(s) 270, 732, 845, 1301
HpyCH4V TGCA 5 cut(s) 439, 460, 989, 1035, 1349
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 45, 66, 638, 1334
HpyF3I CTNAG 4 cut(s) 99, 330, 900, 1233
Hsp92II CATG 4 cut(s) 709, 784, 935, 954
Ksp22I TGATCA 2 cut(s) 1138, 1210
Kzo9I GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 5 cut(s) 27, 121, 707, 851, 1333
Lsp1109I GCAGC 1 cut(s) 1177
LweI GCATC 3 cut(s) 274, 1177, 1336
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 2 cut(s) 906, 1109
MaeIII GTNAC 5 cut(s) 497, 755, 770, 839, 1240
MalI GATC 8 cut(s) 12, 423, 779, 897, 921, 1125, 1140, 1212
MboI GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
MboII GAAGA 5 cut(s) 219, 493, 737, 880, 1055
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 4 cut(s) 32, 368, 623, 704
MlsI TGGCCA 1 cut(s) 564
MluNI TGGCCA 1 cut(s) 564
MlyI GAGTC 2 cut(s) 80, 562
Mox20I TGGCCA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 564
MseI TTAA 5 cut(s) 345, 645, 750, 861, 1014
MslI CAYNNNNRTG 2 cut(s) 785, 936
Msp20I TGGCCA 1 cut(s) 564
MspI CCGG 3 cut(s) 205, 368, 1360
MspR9I CCNGG 8 cut(s) 123, 205, 206, 368, 819, 837, 960, 1365
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 5 cut(s) 123, 819, 837, 960, 1365
MvnI CGCG 2 cut(s) 9, 60
MwoI GCNNNNNNNGC 5 cut(s) 36, 45, 66, 638, 1334
NciI CCSGG 3 cut(s) 205, 206, 368
NcoI CCATGG 1 cut(s) 705
NdeII GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
NlaIII CATG 4 cut(s) 709, 784, 935, 954
NlaIV GGNNCC 3 cut(s) 29, 816, 897
NmeAIII GCCGAG 1 cut(s) 824
NmuCI GTSAC 2 cut(s) 497, 770
NruI TCGCGA 1 cut(s) 9
PagI TCATGA 2 cut(s) 780, 931
PciSI GCTCTTC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 5 cut(s) 4, 55, 998, 1307, 1375
PflFI GACNNNGTC 1 cut(s) 1110
PfoI TCCNGGA 2 cut(s) 121, 817
PkrI GCNGC 3 cut(s) 62, 1192, 1370
PleI GAGTC 2 cut(s) 80, 561
PpsI GAGTC 2 cut(s) 80, 561
PpuMI RGGWCCY 1 cut(s) 815
PshBI ATTAAT 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 5 cut(s) 121, 817, 835, 958, 1363
PspEI GGTNACC 1 cut(s) 839
PspGI CCWGG 5 cut(s) 121, 817, 835, 958, 1363
PspN4I GGNNCC 3 cut(s) 29, 816, 897
PspPI GGNCC 4 cut(s) 47, 68, 140, 815
PspPPI RGGWCCY 1 cut(s) 815
PsuI RGATCY 1 cut(s) 895
PsyI GACNNNGTC 1 cut(s) 1110
RruI TCGCGA 1 cut(s) 9
RseI CAYNNNNRTG 2 cut(s) 785, 936
SalI GTCGAC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 5 cut(s) 345, 645, 750, 861, 1014
SatI GCNGC 3 cut(s) 61, 1191, 1369
Sau3AI GATC 8 cut(s) 10, 421, 777, 895, 919, 1123, 1138, 1210
Sau96I GGNCC 4 cut(s) 47, 68, 140, 815
SchI GAGTC 2 cut(s) 80, 562
ScrFI CCNGG 8 cut(s) 123, 205, 206, 368, 819, 837, 960, 1365
SduI GDGCHC 4 cut(s) 32, 368, 623, 704
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 3 cut(s) 274, 1177, 1336
SinI GGWCC 2 cut(s) 140, 815
SmaI CCCGGG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 785, 936
SmlI CTYRAG 2 cut(s) 992, 1148
SmoI CTYRAG 2 cut(s) 992, 1148
SsiI CCGC 4 cut(s) 39, 60, 925, 1369
SspMI CTAG 2 cut(s) 906, 1109
StyD4I CCNGG 8 cut(s) 121, 203, 204, 366, 817, 835, 958, 1363
StyI CCWWGG 3 cut(s) 64, 705, 880
TaaI ACNGT 4 cut(s) 270, 732, 845, 1301
TaqI TCGA 2 cut(s) 19, 182
TauI GCSGC 2 cut(s) 63, 1371
TfiI GAWTC 5 cut(s) 4, 55, 998, 1307, 1375
Tru1I TTAA 5 cut(s) 345, 645, 750, 861, 1014
Tru9I TTAA 5 cut(s) 345, 645, 750, 861, 1014
TscAI CASTG 1 cut(s) 1251
TseFI GTSAC 2 cut(s) 497, 770
TseI GCWGC 1 cut(s) 1190
Tsp45I GTSAC 2 cut(s) 497, 770
TspDTI ATGAA 3 cut(s) 17, 705, 1146
TspGWI ACGGA 1 cut(s) 153
TspMI CCCGGG 1 cut(s) 204
TspRI CASTG 1 cut(s) 1251
Tth111I GACNNNGTC 1 cut(s) 1110
VpaK11BI GGWCC 2 cut(s) 140, 815
VspI ATTAAT 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 4 cut(s) 132, 433, 723, 1196
XmaI CCCGGG 1 cut(s) 204
XmiI GTMKAC 3 cut(s) 182, 236, 413
XspI CTAG 2 cut(s) 906, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.