Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007047

Physical Location & Seq

Genomic Coordinates Forward (+)

50606764 .. 50608518

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0395500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCGACCGGTGAAGATGAGATGGCAAAGAAATTGGCGAGAGAAGAAAGAAGAAGAAGAATTGCAGAAAGAGGATCGGATCGCATGGCCCTTATCACGGGTCAGATCCAATCTCTCCCTCCCTCACCACCCGTTTCACCTGTATTACCACCACAACAACCCAGACCTCCAATCAATGTTGGTACTCTGTTCAAGGATGATAACCGTAGAGGTTCGACATTGCAAACACAAGAAGCTAGCAATAAAGTTCCAACACAAACCAACATTGAAACTAAGCAATCCGAAGGTGTGGATGGAAGCACCAAAACACAACTACCAGCGGACACAACAATAGTTTCAAAGTCACCAACCAATACGGATCAACCTCAGAGCCAGCGTAGGAGGACCAATTTTTTCAGTTCGAAAATATTAAACTTGTGCATAGTAGAATCGGAGAACATGAGAATTGTGTGTTCTCTCATAATAGCTTTGTTGGTAGTCTTGTCTTACGTTGATTACGCATTGTTTGGAATGAACATAGTGAACTCGGAGAGTGTCGTGGCCTCGAGGCCTCTATACATTATTTTGCTGACTGATGTAACAGTTGTGATGGCACGATTAGTGTACTTCAGGGAGGCAGACGAAGAAGAAAGAATGGTGAGTAGTAGTCAAGATAATGAGGGACACAGTTGGGCTGGAGCAGTTAAGCTTTTGGAGAGGGGTTTGGTGGTCTATCAAGCCATTCGTGGGATTTTCATAGATTTTAGTGTTTATGCTGTGGTTGTTATTTGTGGCCTCTCTTTTTTTATAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0035553 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

264

Amino Acids

29.34

Weight (kDa)

6.64

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14140 AT3G14160
fragaria_vesca	FvH4_6g35240 FvH4_6g35240
malus_domestica	MD09G1177300.v1.1
prunus_persica	Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1
pyrus_communis	pycom09g09550
rosa_chinensis	RchiOBHm_Chr2g0146601
rosa_laevigata	RLG00000020209
rosa_multiflora	Rmu_sc0001986.1_g000030
rosa_roxburghii	Rroxscaffold_2G00100020
rosa_rugosa	Rorug02G0395100 Rorug02G0395200 Rorug02G0395300 Rorug02G0395400 Rorug02G0395500 Rorug02G0395600
rosa_samantha	Rh2AG451800 Rh2BG464600 Rh2CG438700 Rh2DG473600
rosa_wichuraiana	Rw2G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	788
AbsI	CCTCGAGG	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	4 cut(s)	82, 87, 100, 366
AcuI	CTGAAG	1 cut(s)	592
AfaI	GTAC	2 cut(s)	184, 605
AfiI	CCNNNNNNNGG	2 cut(s)	97, 726
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	193, 269, 339
AluBI	AGCT	3 cut(s)	236, 467, 688
AluI	AGCT	3 cut(s)	236, 467, 688
AlwI	GGATC	4 cut(s)	82, 87, 100, 366
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	4 cut(s)	87, 540, 548, 772
AsiGI	ACCGGT	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	88, 384
AsuHPI	GGTGA	5 cut(s)	23, 117, 129, 336, 649
AsuII	TTCGAA	1 cut(s)	401
AsuNHI	GCTAGC	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	384
BccI	CCATC	3 cut(s)	16, 287, 583
BfaI	CTAG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	88, 384
BmtI	GCTAGC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	401
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 726
Bse118I	RCCGGY	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	218
BseGI	GGATG	2 cut(s)	202, 298
BseLI	CCNNNNNNNGG	2 cut(s)	97, 726
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	89, 542, 550, 774
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	2 cut(s)	97, 726
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	4 cut(s)	89, 542, 550, 774
BsoBI	CYCGRG	1 cut(s)	544
Bsp119I	TTCGAA	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	74, 79, 105, 358
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	4 cut(s)	89, 542, 550, 774
BspCNI	CTCAG	1 cut(s)	379
BspOI	GCTAGC	1 cut(s)	240
BspPI	GGATC	4 cut(s)	82, 87, 100, 366
BspT104I	TTCGAA	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	4 cut(s)	74, 79, 105, 358
Bst4CI	ACNGT	3 cut(s)	206, 583, 668
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	238, 374
BstDEI	CTNAG	2 cut(s)	273, 366
BstF5I	GGATG	2 cut(s)	202, 298
BstKTI	GATC	4 cut(s)	77, 82, 108, 361
BstMBI	GATC	4 cut(s)	74, 79, 105, 358
BstMCI	CGRYCG	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	4 cut(s)	89, 542, 550, 774
BtsCI	GGATG	2 cut(s)	202, 298
Cac8I	GCNNGC	2 cut(s)	238, 374
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	88, 384
Csp6I	GTAC	2 cut(s)	183, 604
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	2 cut(s)	85, 439
CviQI	GTAC	2 cut(s)	183, 604
DdeI	CTNAG	2 cut(s)	273, 366
DpnI	GATC	4 cut(s)	76, 81, 107, 360
DpnII	GATC	4 cut(s)	74, 79, 105, 358
Eco147I	AGGCCT	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	592
Eco88I	CYCGRG	1 cut(s)	544
FaeI	CATG	2 cut(s)	88, 442
FaiI	YATR	9 cut(s)	86, 422, 440, 461, 518, 556, 737, 753, 788
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	2 cut(s)	84, 438
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	2 cut(s)	209, 305
FspBI	CTAG	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	4 cut(s)	89, 542, 550, 774
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	2 cut(s)	88, 442
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	5 cut(s)	23, 117, 129, 336, 649
Hpy166II	GTNNAC	3 cut(s)	6, 523, 604
Hpy188I	TCNGA	6 cut(s)	79, 105, 283, 369, 433, 529
Hpy188III	TCNNGA	1 cut(s)	650
Hpy8I	GTNNAC	3 cut(s)	6, 523, 604
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	3 cut(s)	206, 583, 668
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	65, 223, 420
HpyF3I	CTNAG	2 cut(s)	273, 366
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	88, 442
Kzo9I	GATC	4 cut(s)	74, 79, 105, 358
LmnI	GCTCC	1 cut(s)	677
LpnPI	CCDG	7 cut(s)	22, 153, 175, 330, 386, 595, 660
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	342, 577
MalI	GATC	4 cut(s)	76, 81, 107, 360
MboI	GATC	4 cut(s)	74, 79, 105, 358
MboII	GAAGA	7 cut(s)	26, 56, 63, 66, 69, 635, 638
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	4 cut(s)	32, 60, 388, 444
MmeI	TCCRAC	1 cut(s)	275
MseI	TTAA	2 cut(s)	410, 684
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	74, 79, 105, 358
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	88, 442
NmuCI	GTSAC	1 cut(s)	342
NspV	TTCGAA	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	428
PinAI	ACCGGT	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	788
PspPI	GGNCC	2 cut(s)	88, 384
PspXI	VCTCGAGB	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	184, 605
RsaNI	GTAC	2 cut(s)	183, 604
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	410, 684
Sau3AI	GATC	4 cut(s)	74, 79, 105, 358
Sau96I	GGNCC	2 cut(s)	88, 384
Sfr274I	CTCGAG	1 cut(s)	544
SfuI	TTCGAA	1 cut(s)	401
SinI	GGWCC	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	4 cut(s)	32, 60, 388, 444
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	1 cut(s)	320
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	550
TaaI	ACNGT	3 cut(s)	206, 583, 668
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	4 cut(s)	5, 215, 401, 545
TasI	AATT	4 cut(s)	32, 60, 388, 444
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	410, 684
Tru9I	TTAA	2 cut(s)	410, 684
TseFI	GTSAC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	527, 724
TspGWI	ACGGA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.