Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007047

Physical Location & Seq

Genomic Coordinates Forward (+)

64231737 .. 64233693

Gene Structure 1957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAGATTGGAGAAAACTTTAGGAAGATGACAAGGGGTAGTGACAATCATATGCAATCTAAATCAGAAGCCAAAGACAAGCCGTTCCCTATCAAGAGTCCTATAAGTTCATTTGGCCATCAAAAACCAGAGCTTTCTGAACACAAAGCAGTAGACTCTTCTTTTGATTTGTGCCCAACCAAAGCCAGCGGTGCTGTTACTCTAAAGACTTCTCTTCTTGTACAGAATAGAGAAAGGAAGAATGAAATCAAGCGCTCCATGGAACAACCAATTGAAATTGTTTTACAGTCTGGAATGGTTCTTCTTAAAAGTTACATTTCTACCAGTGACCAGATCAAGATAGTGAAGCTATGCCGAGACCTGGGTTTGGGTCCTGGAGGTTTCTACAAACCTGGTTACCGTGATGGAGCAAAACTGAATTTGATGATGATGTGCCTTGGTAAGAATTGGGATCCTGAGACTAGCAAATATGGAGATCACCGCCCTCATGATGGTGCTAAACCTCCATTTATTCCTGTTGATTTCTTTCGGTTGGTTGAAAATGCAATAAAAGACAGCCATTCCCTTATCAGAAAGGATTCTAAAGCTAGCAATTCTGAATACATACTTCCTCGGATGACCCCAGACATTTGCCTTGTGAACTTCTACTCATCAACTGGGCGACTAGGTCTCCATCAGGATCGTGATGAAAGTGAACAAAGTCTCCGTAAGCAGTTGCCTGTTGTCTCTTTTTCCATTGGAGATGCTGCAGAATTCTTGTATGGTGATCAAAGGGATGTTGAACTAGCAAAGAAGATTACACTGGAATCTGGAGATGTTCTCATATTTGGTGGAGAATCAAGACATATCTTTCACGGTGTAGCTTCTATACAGCCAAATACTGCTCCTAAGACCCTACTGGAAGAAACAAAGCTCCAGCCTGGCCGCCTGAATCTTACTTTCAGAAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0035553 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

317

Amino Acids

35.61

Weight (kDa)

9.07

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	98 - 315	4.5e-46	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14140 AT3G14160
fragaria_vesca	FvH4_6g35240 FvH4_6g35240
malus_domestica	MD09G1177300.v1.1
prunus_persica	Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1
pyrus_communis	pycom09g09550
rosa_chinensis	RchiOBHm_Chr2g0146601
rosa_laevigata	RLG00000020209
rosa_multiflora	Rmu_sc0001986.1_g000030
rosa_roxburghii	Rroxscaffold_2G00100020
rosa_rugosa	Rorug02G0395100 Rorug02G0395200 Rorug02G0395300 Rorug02G0395400 Rorug02G0395500 Rorug02G0395600
rosa_samantha	Rh2AG451800 Rh2BG464600 Rh2CG438700 Rh2DG473600
rosa_wichuraiana	Rw2G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	3 cut(s)	189, 481, 925
AclWI	GGATC	3 cut(s)	446, 459, 687
AcoI	YGGCCR	2 cut(s)	115, 922
AcsI	RAATTY	2 cut(s)	418, 752
AfaI	GTAC	1 cut(s)	222
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	361, 367, 491
AgsI	TTSAA	3 cut(s)	275, 539, 782
AjnI	CCWGG	4 cut(s)	360, 373, 391, 919
AloI	GAACNNNNNNTCC	2 cut(s)	687, 719
AluBI	AGCT	5 cut(s)	133, 349, 587, 863, 913
AluI	AGCT	5 cut(s)	133, 349, 587, 863, 913
Alw26I	GTCTC	5 cut(s)	351, 452, 674, 707, 730
AlwI	GGATC	3 cut(s)	446, 459, 687
Aor51HI	AGCGCT	1 cut(s)	254
AoxI	GGCC	2 cut(s)	115, 922
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	418, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	470, 776
AsuNHI	GCTAGC	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	4 cut(s)	126, 398, 485, 681
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	4 cut(s)	362, 375, 393, 921
BclI	TGATCA	1 cut(s)	766
BcoDI	GTCTC	5 cut(s)	351, 452, 674, 707, 730
BfaI	CTAG	4 cut(s)	462, 588, 665, 785
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	2 cut(s)	747, 925
BlsI	GCNGC	2 cut(s)	748, 926
Bme1390I	CCNGG	4 cut(s)	362, 375, 393, 921
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	372, 453
BmrFI	CCNGG	4 cut(s)	362, 375, 393, 921
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	1 cut(s)	733
BmtI	GCTAGC	1 cut(s)	591
BmuI	ACTGGG	1 cut(s)	666
BplI	GAGNNNNNCTC	2 cut(s)	804, 836
BpmI	CTGGAG	3 cut(s)	396, 831, 899
BsaI	GGTCTC	2 cut(s)	351, 674
BsaJI	CCNNGG	4 cut(s)	258, 361, 436, 611
BsaXI	ACNNNNNCTCC	4 cut(s)	654, 684, 687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 367, 491
Bse1I	ACTGG	4 cut(s)	324, 661, 807, 903
BseBI	CCWGG	4 cut(s)	362, 375, 393, 921
BseDI	CCNNGG	4 cut(s)	258, 361, 436, 611
BseGI	GGATG	2 cut(s)	621, 781
BseLI	CCNNNNNNNGG	3 cut(s)	361, 367, 491
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	4 cut(s)	324, 661, 807, 903
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	733
BshFI	GGCC	2 cut(s)	117, 924
BslI	CCNNNNNNNGG	3 cut(s)	361, 367, 491
BsmAI	GTCTC	5 cut(s)	351, 452, 674, 707, 730
BsnI	GGCC	2 cut(s)	117, 924
Bso31I	GGTCTC	2 cut(s)	351, 674
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	5 cut(s)	333, 451, 475, 679, 766
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	189, 481, 925
BspANI	GGCC	2 cut(s)	117, 924
BspCNI	CTCAG	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	372, 453
BspMAI	CTGCAG	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	591
BspPI	GGATC	3 cut(s)	446, 459, 687
BspTNI	GGTCTC	2 cut(s)	351, 674
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	324, 661, 807, 903
BssECI	CCNNGG	4 cut(s)	258, 361, 436, 611
BssMI	GATC	5 cut(s)	333, 451, 475, 679, 766
BssT1I	CCWWGG	2 cut(s)	258, 436
Bst2UI	CCWGG	4 cut(s)	362, 375, 393, 921
Bst4CI	ACNGT	3 cut(s)	288, 401, 857
Bst6I	CTCTTC	2 cut(s)	163, 219
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	187, 589
BstDEI	CTNAG	2 cut(s)	456, 888
BstDSI	CCRYGG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	621, 781
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	5 cut(s)	336, 454, 478, 682, 769
BstMAI	GTCTC	5 cut(s)	351, 452, 674, 707, 730
BstMBI	GATC	5 cut(s)	333, 451, 475, 679, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	4 cut(s)	362, 375, 393, 921
BstPI	GGTNACC	1 cut(s)	395
BstSCI	CCNGG	4 cut(s)	360, 373, 391, 919
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	733
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	117, 924
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	621, 781
BtsIMutI	CAGTG	2 cut(s)	331, 800
Cac8I	GCNNGC	2 cut(s)	187, 589
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	371
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	259, 488
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	456, 888
DpnI	GATC	5 cut(s)	335, 453, 477, 681, 768
DpnII	GATC	5 cut(s)	333, 451, 475, 679, 766
EaeI	YGGCCR	2 cut(s)	115, 922
Eam1104I	CTCTTC	2 cut(s)	163, 219
EarI	CTCTTC	2 cut(s)	163, 219
Eco130I	CCWWGG	2 cut(s)	258, 436
Eco31I	GGTCTC	2 cut(s)	351, 674
Eco47I	GGWCC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	752
EcoRII	CCWGG	4 cut(s)	360, 373, 391, 919
EcoT14I	CCWWGG	2 cut(s)	258, 436
ErhI	CCWWGG	2 cut(s)	258, 436
FaeI	CATG	2 cut(s)	262, 491
FatI	CATG	2 cut(s)	258, 487
FauNDI	CATATG	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	747, 925
FokI	GGATG	2 cut(s)	628, 788
Fsp4HI	GCNGC	2 cut(s)	747, 925
FspBI	CTAG	4 cut(s)	462, 588, 665, 785
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	747, 925
GsuI	CTGGAG	3 cut(s)	396, 831, 899
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	117, 924
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	262, 491
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	6 cut(s)	97, 155, 578, 806, 836, 931
HphI	GGTGA	2 cut(s)	470, 776
Hpy166II	GTNNAC	3 cut(s)	154, 640, 695
Hpy188I	TCNGA	6 cut(s)	67, 139, 572, 598, 615, 944
Hpy188III	TCNNGA	9 cut(s)	94, 291, 337, 455, 488, 677, 683, 810, 840
Hpy8I	GTNNAC	3 cut(s)	154, 640, 695
HpyCH4III	ACNGT	3 cut(s)	288, 401, 857
HpyCH4V	TGCA	4 cut(s)	4, 55, 545, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	456, 888
Hsp92II	CATG	2 cut(s)	262, 491
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	5 cut(s)	333, 451, 475, 679, 766
LmnI	GCTCC	4 cut(s)	260, 407, 889, 918
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	1 cut(s)	733
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	4 cut(s)	462, 588, 665, 785
MaeIII	GTNAC	5 cut(s)	41, 196, 311, 326, 395
MalI	GATC	5 cut(s)	335, 453, 477, 681, 768
MboI	GATC	5 cut(s)	333, 451, 475, 679, 766
MboII	GAAGA	7 cut(s)	37, 150, 206, 250, 293, 805, 914
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	6 cut(s)	270, 276, 418, 445, 592, 752
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	106, 149
MnlI	CCTC	4 cut(s)	371, 495, 513, 621
Mox20I	TGGCCA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	189
MspR9I	CCNGG	4 cut(s)	362, 375, 393, 921
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	4 cut(s)	362, 375, 393, 921
MwoI	GCNNNNNNNGC	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	51
NdeII	GATC	5 cut(s)	333, 451, 475, 679, 766
NheI	GCTAGC	1 cut(s)	587
NlaIII	CATG	2 cut(s)	262, 491
NlaIV	GGNNCC	2 cut(s)	372, 453
NmeAIII	GCCGAG	1 cut(s)	380
NmuCI	GTSAC	2 cut(s)	41, 326
PagI	TCATGA	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	577
PfeI	GAWTC	4 cut(s)	578, 806, 836, 931
PflFI	GACNNNGTC	1 cut(s)	666
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	748, 926
PleI	GAGTC	2 cut(s)	105, 149
PpsI	GAGTC	2 cut(s)	105, 149
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	4 cut(s)	360, 373, 391, 919
PspEI	GGTNACC	1 cut(s)	395
PspGI	CCWGG	4 cut(s)	360, 373, 391, 919
PspN4I	GGNNCC	2 cut(s)	372, 453
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	751
PsuI	RGATCY	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	666
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	747, 925
Sau3AI	GATC	5 cut(s)	333, 451, 475, 679, 766
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	106, 149
ScrFI	CCNGG	4 cut(s)	362, 375, 393, 921
SduI	GDGCHC	1 cut(s)	176
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	6 cut(s)	270, 276, 418, 445, 592, 752
SsiI	CCGC	3 cut(s)	189, 481, 925
SspMI	CTAG	4 cut(s)	462, 588, 665, 785
StyD4I	CCNGG	4 cut(s)	360, 373, 391, 919
StyI	CCWWGG	2 cut(s)	258, 436
TaaI	ACNGT	3 cut(s)	288, 401, 857
TasI	AATT	6 cut(s)	270, 276, 418, 445, 592, 752
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	927
TfiI	GAWTC	4 cut(s)	578, 806, 836, 931
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	331, 807
TseFI	GTSAC	2 cut(s)	41, 326
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	41, 326
TspDTI	ATGAA	3 cut(s)	99, 258, 702
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	2 cut(s)	331, 807
Tth111I	GACNNNGTC	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	2 cut(s)	418, 752
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	4 cut(s)	462, 588, 665, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.