Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007047

Physical Location & Seq

Genomic Coordinates Reverse (-)

50600656 .. 50601081

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0395400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGAAGAAAAAGAAGAAAAACCTGCTAGAAGATCTTGGGTGTGGTTGCACTTCAAGAAGATCGAGAAGCCTCAATCAGTTAAAGATTAAGGATGGTAAGAAAGTTCAAACTTGTGTTAAAGAGAGAGCTAAATGCAATAATTGTGGAACTGATCTTGCATGTGATAGTTATGGAAATGGAACAAGTTCACTTAGGAGACATATACAAGAAGTGTGCAAAAAATATCCGGGTAGGGTTGATTTAAAAAGTGGGCAGCAAGTATTAAGTACTAGTGGTACTAAGGAGTTGGTTATGGTGAAATGGAGTCAGGAAGCTTGCAGGGAAGAAGCCTGCAAGATGATAGTAATGGATGAACTACCTTTCAATACTTTTGTCGTGTGGCTGTGCCTAGGTGGGATGTGCCTTCTAGGAGGGTTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0035553 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

9.33

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14140 AT3G14160
fragaria_vesca	FvH4_6g35240 FvH4_6g35240
malus_domestica	MD09G1177300.v1.1
prunus_persica	Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1
pyrus_communis	pycom09g09550
rosa_chinensis	RchiOBHm_Chr2g0146601
rosa_laevigata	RLG00000020209
rosa_multiflora	Rmu_sc0001986.1_g000030
rosa_roxburghii	Rroxscaffold_2G00100020
rosa_rugosa	Rorug02G0395100 Rorug02G0395200 Rorug02G0395300 Rorug02G0395400 Rorug02G0395500 Rorug02G0395600
rosa_samantha	Rh2AG451800 Rh2BG464600 Rh2CG438700 Rh2DG473600
rosa_wichuraiana	Rw2G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	271, 280
AgsI	TTSAA	3 cut(s)	57, 110, 367
AhlI	ACTAGT	1 cut(s)	272
AluBI	AGCT	2 cut(s)	131, 317
AluI	AGCT	2 cut(s)	131, 317
Alw26I	GTCTC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	187
AspA2I	CCTAGG	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	310
AvrII	CCTAGG	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	193
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	4 cut(s)	29, 273, 392, 410
BfuAI	ACCTGC	1 cut(s)	33
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	257
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	258
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	3 cut(s)	100, 358, 405
BseXI	GCAGC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	34, 62, 154
BspMI	ACCTGC	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	3 cut(s)	34, 62, 154
BssT1I	CCWWGG	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	319, 334
BstDEI	CTNAG	2 cut(s)	194, 282
BstF5I	GGATG	3 cut(s)	100, 358, 405
BstKTI	GATC	3 cut(s)	37, 65, 157
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	3 cut(s)	34, 62, 154
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	100, 358, 405
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	319, 334
Csp6I	GTAC	2 cut(s)	270, 279
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	5 cut(s)	72, 131, 317, 332, 385
CviKI_1	RGCY	5 cut(s)	72, 131, 317, 332, 385
CviQI	GTAC	2 cut(s)	270, 279
DdeI	CTNAG	2 cut(s)	194, 282
DpnI	GATC	3 cut(s)	36, 64, 156
DpnII	GATC	3 cut(s)	34, 62, 154
DraI	TTTAAA	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	1 cut(s)	165
FaiI	YATR	5 cut(s)	163, 174, 204, 206, 296
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	3 cut(s)	107, 365, 412
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	4 cut(s)	29, 273, 392, 410
GluI	GCNGC	1 cut(s)	257
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	3 cut(s)	57, 66, 311
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	416
HpyCH4V	TGCA	6 cut(s)	51, 138, 161, 219, 321, 336
HpyF3I	CTNAG	2 cut(s)	194, 282
Hsp92II	CATG	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	34, 62, 154
LpnPI	CCDG	5 cut(s)	38, 243, 296, 307, 346
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	4 cut(s)	29, 273, 392, 410
MalI	GATC	3 cut(s)	36, 64, 156
MboI	GATC	3 cut(s)	34, 62, 154
MboII	GAAGA	6 cut(s)	16, 19, 28, 44, 72, 338
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	2 cut(s)	83, 407
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	5 cut(s)	83, 90, 120, 245, 266
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	231
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	34, 62, 154
NlaIII	CATG	1 cut(s)	165
NspI	RCATGY	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	2 cut(s)	271, 280
RsaNI	GTAC	2 cut(s)	270, 279
SaqAI	TTAA	5 cut(s)	83, 90, 120, 245, 266
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	34, 62, 154
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	5 cut(s)	27, 133, 319, 364, 397
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	1 cut(s)	142
SspMI	CTAG	4 cut(s)	29, 273, 392, 410
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	391
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	269
Tru1I	TTAA	5 cut(s)	83, 90, 120, 245, 266
Tru9I	TTAA	5 cut(s)	83, 90, 120, 245, 266
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	17, 369
XceI	RCATGY	1 cut(s)	165
XmaJI	CCTAGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	4 cut(s)	29, 273, 392, 410
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.