Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007047

Physical Location & Seq

Genomic Coordinates Reverse (-)

50594593 .. 50595763

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0395200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCCAAGAAACTCCAAAAGCGTCTCCAAGATTACCTCACCAAGATTAAGAAACCACCCCCTTCAATCCAATTCCCCTCTAAAAAATGGATGCGAGCCTGTAAACACCCCAAAACCCTATCTTTCGCTATCAACAACAATGAGACTCATGACAAAGATGATGATGCGGCAACACTCTCAGATATTGATGAGTTTCTCTTCGAGAATTTCAGGTCTCTGTACCTAAGAGACGATCAAGGAGACTCCATCAACGACGACGAAAGAAGAGAAGAGAAAGAACTACATCGTCCTCCTCGTGATGCCCTTCGGCATAAAACCCTACAAATGAAAGAAGGCCGTCCTGGTGATCATGAAAATGAAAGCACAAACGAGCCCTTTTGGGATAAAACTCTACACCTGAAGAAGCGTCGTCCTGATCATCAAGAAACCCAAAACCAAGATGGGTTTCTGTTCGAATCCCCTCGACTGAATATTGATCCACCGGCGGCGGATCTCTGTGGCTCACACAGGTTTTCGGTGTCCCCAGGTCGGCTGTCAAGCTCGGTTCGGACTAGTACAACCACCACGACATCTGAGGACGCAGGATCCAGCTCAATGTCAACACGAACCCTAAACGACTCTGCTATCACATCACGTTCTAATAACAACGATCATGTGGCACTTCCCAGTGACTGTATCTCAGTGTTGATGTACTCTCCCAACCCTGGCGACGAGTTTCGAAGATCCATGCATGACATGGTTGAGGCTCGCCTCAGAAACAAGGCAAAGGTCGATTGGAATTTCATGGAAGAGCTTCTGTTTTGTTATCTCAATCTCAACGAGAAGAAGTCCCACAGGTTCATACTGAGTGCTTTCGCGGATTTGGTCGTGGACATGCGTCCGGATTCTGATAGCGTCCCAGAGAGATCACGGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0035553 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

306

Amino Acids

35.4

Weight (kDa)

6.61

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	232 - 292	5.8e-21	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14140 AT3G14160
fragaria_vesca	FvH4_6g35240 FvH4_6g35240
malus_domestica	MD09G1177300.v1.1
prunus_persica	Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1 Prupe.3G036700_v2.0.a1
pyrus_communis	pycom09g09550
rosa_chinensis	RchiOBHm_Chr2g0146601
rosa_laevigata	RLG00000020209
rosa_multiflora	Rmu_sc0001986.1_g000030
rosa_roxburghii	Rroxscaffold_2G00100020
rosa_rugosa	Rorug02G0395100 Rorug02G0395200 Rorug02G0395300 Rorug02G0395400 Rorug02G0395500 Rorug02G0395600
rosa_samantha	Rh2AG451800 Rh2BG464600 Rh2CG438700 Rh2DG473600
rosa_wichuraiana	Rw2G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	857
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	4 cut(s)	167, 485, 488, 857
AclWI	GGATC	5 cut(s)	470, 498, 579, 592, 717
AcsI	RAATTY	3 cut(s)	205, 778, 914
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	3 cut(s)	221, 556, 692
AfiI	CCNNNNNNNGG	2 cut(s)	528, 704
AgsI	TTSAA	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	551
AjnI	CCWGG	3 cut(s)	340, 523, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	540, 591, 793
AluI	AGCT	3 cut(s)	540, 591, 793
Alw26I	GTCTC	5 cut(s)	29, 137, 219, 222, 234
AlwI	GGATC	5 cut(s)	470, 498, 579, 592, 717
AlwNI	CAGNNNCTG	1 cut(s)	672
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	1 cut(s)	334
ApoI	RAATTY	3 cut(s)	205, 778, 914
Asp700I	GAANNNNTTC	1 cut(s)	792
AsuHPI	GGTGA	2 cut(s)	31, 356
AsuII	TTCGAA	2 cut(s)	453, 718
BamHI	GGATCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	375
BauI	CACGAG	1 cut(s)	294
BccI	CCATC	2 cut(s)	254, 434
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	3 cut(s)	342, 525, 705
BclI	TGATCA	2 cut(s)	346, 415
BcoDI	GTCTC	5 cut(s)	29, 137, 219, 222, 234
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	1 cut(s)	552
BisI	GCNGC	2 cut(s)	168, 486
BlsI	GCNGC	2 cut(s)	169, 487
Bme1390I	CCNGG	3 cut(s)	342, 525, 705
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	3 cut(s)	342, 525, 705
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	3 cut(s)	81, 154, 289
BmuI	ACTGGG	1 cut(s)	660
BoxI	GACNNNNGTC	1 cut(s)	876
Bpu14I	TTCGAA	2 cut(s)	453, 718
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	523, 703
BsaWI	WCCGGW	1 cut(s)	880
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 704
Bse118I	RCCGGY	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	666
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	3 cut(s)	342, 525, 705
BseDI	CCNNGG	2 cut(s)	523, 703
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	528, 704
BseMII	CTCAG	5 cut(s)	192, 564, 693, 766, 836
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	857
BshFI	GGCC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	482, 881
BslFI	GGGAC	3 cut(s)	505, 814, 881
BslI	CCNNNNNNNGG	2 cut(s)	528, 704
BsmAI	GTCTC	5 cut(s)	29, 137, 219, 222, 234
BsmBI	CGTCTC	2 cut(s)	29, 222
BsmFI	GGGAC	3 cut(s)	505, 814, 881
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	219
Bsp119I	TTCGAA	2 cut(s)	453, 718
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	880
Bsp143I	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
BspACI	CCGC	4 cut(s)	167, 485, 488, 857
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	5 cut(s)	191, 565, 692, 765, 837
BspEI	TCCGGA	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	857
BspHI	TCATGA	2 cut(s)	148, 349
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	5 cut(s)	470, 498, 579, 592, 717
BspQI	GCTCTTC	1 cut(s)	783
BspT104I	TTCGAA	2 cut(s)	453, 718
BspTNI	GGTCTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	666
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	523, 703
BssMI	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
BssSI	CACGAG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	342, 525, 705
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	4 cut(s)	203, 259, 264, 783
BstBI	TTCGAA	2 cut(s)	453, 718
BstC8I	GCNNGC	2 cut(s)	96, 748
BstDEI	CTNAG	6 cut(s)	178, 224, 573, 679, 752, 845
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	857
BstKTI	GATC	9 cut(s)	235, 349, 418, 478, 493, 587, 652, 725, 908
BstMAI	GTCTC	5 cut(s)	29, 137, 219, 222, 234
BstMBI	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
BstNI	CCWGG	3 cut(s)	342, 525, 705
BstNSI	RCATGY	1 cut(s)	877
BstPAI	GACNNNNGTC	1 cut(s)	876
BstSCI	CCNGG	3 cut(s)	340, 523, 703
BstUI	CGCG	1 cut(s)	857
BstX2I	RGATCY	3 cut(s)	490, 584, 722
BstYI	RGATCY	3 cut(s)	490, 584, 722
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	673, 687
Cac8I	GCNNGC	2 cut(s)	96, 748
CaiI	CAGNNNCTG	1 cut(s)	672
CciI	TCATGA	2 cut(s)	148, 349
Cfr10I	RCCGGY	1 cut(s)	481
CseI	GACGC	5 cut(s)	11, 395, 587, 866, 883
Csp6I	GTAC	3 cut(s)	220, 555, 691
CviAII	CATG	8 cut(s)	149, 350, 653, 727, 731, 736, 784, 874
CviJI	RGCY	9 cut(s)	98, 336, 373, 501, 532, 540, 591, 746, 793
CviKI_1	RGCY	9 cut(s)	98, 336, 373, 501, 532, 540, 591, 746, 793
CviQI	GTAC	3 cut(s)	220, 555, 691
DdeI	CTNAG	6 cut(s)	178, 224, 573, 679, 752, 845
DpnI	GATC	9 cut(s)	234, 348, 417, 477, 492, 586, 651, 724, 907
DpnII	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
Eam1104I	CTCTTC	4 cut(s)	203, 259, 264, 783
EarI	CTCTTC	4 cut(s)	203, 259, 264, 783
EciI	GGCGGA	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	419
EcoRII	CCWGG	3 cut(s)	340, 523, 703
EcoT22I	ATGCAT	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	375
Esp3I	CGTCTC	2 cut(s)	29, 222
FaeI	CATG	8 cut(s)	152, 353, 656, 730, 734, 739, 787, 877
FaqI	GGGAC	3 cut(s)	505, 814, 881
FatI	CATG	8 cut(s)	148, 349, 652, 726, 730, 735, 783, 873
FbaI	TGATCA	2 cut(s)	346, 415
Fnu4HI	GCNGC	2 cut(s)	168, 486
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	2 cut(s)	168, 486
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	2 cut(s)	168, 486
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	2 cut(s)	482, 881
HgaI	GACGC	5 cut(s)	11, 395, 587, 866, 883
Hin1II	CATG	8 cut(s)	152, 353, 656, 730, 734, 739, 787, 877
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HinfI	GANTC	5 cut(s)	145, 242, 455, 617, 884
HpaII	CCGG	2 cut(s)	482, 881
HphI	GGTGA	2 cut(s)	31, 356
Hpy166II	GTNNAC	3 cut(s)	104, 600, 871
Hpy188I	TCNGA	5 cut(s)	181, 549, 574, 755, 889
Hpy188III	TCNNGA	7 cut(s)	149, 202, 296, 350, 413, 422, 881
Hpy8I	GTNNAC	3 cut(s)	104, 600, 871
Hpy99I	CGWCG	4 cut(s)	257, 260, 411, 713
HpyAV	CCTTC	3 cut(s)	72, 314, 326
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	1 cut(s)	730
HpyF3I	CTNAG	6 cut(s)	178, 224, 573, 679, 752, 845
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	8 cut(s)	152, 353, 656, 730, 734, 739, 787, 877
Kpn2I	TCCGGA	1 cut(s)	880
Ksp22I	TGATCA	2 cut(s)	346, 415
Kzo9I	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
LguI	GCTCTTC	1 cut(s)	783
LweI	GCATC	3 cut(s)	81, 154, 289
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	9 cut(s)	234, 348, 417, 477, 492, 586, 651, 724, 907
MboI	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
MboII	GAAGA	7 cut(s)	190, 276, 281, 412, 732, 800, 835
MflI	RGATCY	3 cut(s)	490, 584, 722
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	4 cut(s)	71, 205, 778, 914
MlyI	GAGTC	3 cut(s)	139, 236, 611
MnlI	CCTC	8 cut(s)	47, 88, 300, 303, 471, 568, 736, 761
Mph1103I	ATGCAT	1 cut(s)	732
MroI	TCCGGA	1 cut(s)	880
MroXI	GAANNNNTTC	1 cut(s)	792
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	2 cut(s)	482, 881
MspR9I	CCNGG	3 cut(s)	342, 525, 705
MvaI	CCWGG	3 cut(s)	342, 525, 705
MvnI	CGCG	1 cut(s)	857
NdeII	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
NlaIII	CATG	8 cut(s)	152, 353, 656, 730, 734, 739, 787, 877
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	668
NsiI	ATGCAT	1 cut(s)	732
NspI	RCATGY	1 cut(s)	877
NspV	TTCGAA	2 cut(s)	453, 718
PagI	TCATGA	2 cut(s)	148, 349
PciSI	GCTCTTC	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	2 cut(s)	455, 884
PkrI	GCNGC	2 cut(s)	169, 487
PleI	GAGTC	3 cut(s)	139, 236, 611
PpsI	GAGTC	3 cut(s)	139, 236, 611
PshAI	GACNNNNGTC	1 cut(s)	876
Psp6I	CCWGG	3 cut(s)	340, 523, 703
PspGI	CCWGG	3 cut(s)	340, 523, 703
PspN4I	GGNNCC	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	672
PsuI	RGATCY	3 cut(s)	490, 584, 722
RsaI	GTAC	3 cut(s)	221, 556, 692
RsaNI	GTAC	3 cut(s)	220, 555, 691
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	168, 486
Sau3AI	GATC	9 cut(s)	232, 346, 415, 475, 490, 584, 649, 722, 905
SchI	GAGTC	3 cut(s)	139, 236, 611
ScrFI	CCNGG	3 cut(s)	342, 525, 705
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	81, 154, 289
SfuI	TTCGAA	2 cut(s)	453, 718
SgrAI	CRCCGGYG	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	4 cut(s)	71, 205, 778, 914
SsiI	CCGC	4 cut(s)	167, 485, 488, 857
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	340, 523, 703
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	5 cut(s)	201, 453, 463, 718, 771
TasI	AATT	4 cut(s)	71, 205, 778, 914
TatI	WGTACW	2 cut(s)	554, 690
TauI	GCSGC	2 cut(s)	170, 488
TfiI	GAWTC	2 cut(s)	455, 884
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	673, 687
TseFI	GTSAC	1 cut(s)	668
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	5 cut(s)	341, 366, 372, 772, 829
TspRI	CASTG	2 cut(s)	673, 687
XapI	RAATTY	3 cut(s)	205, 778, 914
XceI	RCATGY	1 cut(s)	877
XcmI	CCANNNNNNNNNTGG	2 cut(s)	437, 733
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.