PHD-zinc-finger like domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15120 AT3G15120 |
| fragaria_vesca | FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 |
| malus_domestica | MD11G1256000.v1.1 |
| prunus_persica | Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 |
| pyrus_communis | pycom11g22640 |
| rosa_chinensis | RchiOBHm_Chr5g0032311 |
| rosa_laevigata | RLG00000033384 |
| rosa_multiflora | Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00048110 |
| rosa_rugosa | Rorug05G0130600 Rorug05G0130700 |
| rosa_samantha | Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800 |
| rosa_wichuraiana | Rw5G020480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 3 cut(s) | 3034, 3352, 5552 |
| AccB1I | GGYRCC | 4 cut(s) | 1549, 3034, 3352, 5552 |
| AccBSI | CCGCTC | 2 cut(s) | 2955, 5787 |
| AccI | GTMKAC | 6 cut(s) | 1024, 1087, 1150, 2682, 4668, 5476 |
| AccII | CGCG | 2 cut(s) | 4673, 5436 |
| AclI | AACGTT | 1 cut(s) | 345 |
| AcoI | YGGCCR | 3 cut(s) | 1627, 2862, 4364 |
| AcsI | RAATTY | 6 cut(s) | 1662, 1862, 2048, 2228, 3344, 4620 |
| AcuI | CTGAAG | 4 cut(s) | 750, 876, 1554, 5796 |
| AcvI | CACGTG | 1 cut(s) | 2573 |
| AfeI | AGCGCT | 1 cut(s) | 2316 |
| AflII | CTTAAG | 1 cut(s) | 4319 |
| AflIII | ACRYGT | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 377 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 4005, 4037, 5430, 5462 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 1662, 1694, 3081, 3113, 5745, 5777 |
| Alw21I | GWGCWC | 3 cut(s) | 173, 1831, 4560 |
| Alw44I | GTGCAC | 1 cut(s) | 1827 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1470, 5012 |
| Ama87I | CYCGRG | 1 cut(s) | 1706 |
| Aor51HI | AGCGCT | 1 cut(s) | 2316 |
| AoxI | GGCC | 8 cut(s) | 1627, 1639, 1820, 2636, 2723, 2862, 4328, 4364 |
| ApaI | GGGCCC | 1 cut(s) | 1643 |
| ApaLI | GTGCAC | 1 cut(s) | 1827 |
| ApoI | RAATTY | 6 cut(s) | 1662, 1862, 2048, 2228, 3344, 4620 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 904, 936 |
| AseI | ATTAAT | 3 cut(s) | 1245, 3581, 4587 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 4450, 4926 |
| Asp718I | GGTACC | 3 cut(s) | 3034, 3352, 5552 |
| AspLEI | GCGC | 3 cut(s) | 1995, 2317, 2412 |
| AspS9I | GGNCC | 5 cut(s) | 1639, 1640, 3443, 4328, 4349 |
| AsuC2I | CCSGG | 1 cut(s) | 302 |
| AsuHPI | GGTGA | 8 cut(s) | 1109, 1361, 1544, 1847, 2048, 2411, 4318, 5779 |
| AsuII | TTCGAA | 2 cut(s) | 4618, 4686 |
| AsuNHI | GCTAGC | 3 cut(s) | 623, 1232, 3593 |
| AvaI | CYCGRG | 1 cut(s) | 1706 |
| AvaII | GGWCC | 2 cut(s) | 3443, 4349 |
| AxyI | CCTNAGG | 1 cut(s) | 5346 |
| BaeGI | GKGCMC | 2 cut(s) | 1643, 1831 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 876, 909, 3854, 3887, 4262, 4295, 5536, 5569 |
| BalI | TGGCCA | 1 cut(s) | 4366 |
| BamHI | GGATCC | 1 cut(s) | 4040 |
| BanI | GGYRCC | 4 cut(s) | 1549, 3034, 3352, 5552 |
| BanII | GRGCYC | 4 cut(s) | 173, 475, 1643, 4560 |
| BauI | CACGAG | 2 cut(s) | 1830, 2334 |
| BbrPI | CACGTG | 1 cut(s) | 2573 |
| BbsI | GAAGAC | 4 cut(s) | 845, 1554, 4809, 5716 |
| Bbv12I | GWGCWC | 3 cut(s) | 173, 1831, 4560 |
| BbvCI | CCTCAGC | 1 cut(s) | 4520 |
| BceAI | ACGGC | 2 cut(s) | 1614, 1679 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2675, 2709 |
| BciVI | GTATCC | 4 cut(s) | 2545, 2735, 3258, 4290 |
| BclI | TGATCA | 3 cut(s) | 1852, 4129, 4780 |
| BcnI | CCSGG | 1 cut(s) | 302 |
| BfoI | RGCGCY | 2 cut(s) | 2318, 2413 |
| BfrI | CTTAAG | 1 cut(s) | 4319 |
| BfuI | GTATCC | 4 cut(s) | 2545, 2735, 3258, 4290 |
| BglII | AGATCT | 3 cut(s) | 2083, 2658, 4648 |
| BlpI | GCTNAGC | 1 cut(s) | 2406 |
| BmcAI | AGTACT | 1 cut(s) | 5773 |
| Bme18I | GGWCC | 2 cut(s) | 3443, 4349 |
| BmeT110I | CYCGRG | 1 cut(s) | 1706 |
| BmgBI | CACGTC | 1 cut(s) | 377 |
| BmgT120I | GGNCC | 5 cut(s) | 1639, 1640, 3443, 4328, 4349 |
| BmrI | ACTGGG | 3 cut(s) | 2301, 3270, 5383 |
| BmtI | GCTAGC | 3 cut(s) | 627, 1236, 3597 |
| BmuI | ACTGGG | 3 cut(s) | 2301, 3270, 5383 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4605 |
| BpiI | GAAGAC | 4 cut(s) | 845, 1554, 4809, 5716 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2253, 2285 |
| BpmI | CTGGAG | 2 cut(s) | 3459, 4574 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2727, 4520 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2406 |
| Bpu14I | TTCGAA | 2 cut(s) | 4618, 4686 |
| BpuEI | CTTGAG | 2 cut(s) | 2735, 4614 |
| BpuMI | CCSGG | 1 cut(s) | 302 |
| BsaAI | YACGTR | 2 cut(s) | 2573, 2975 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5284 |
| BsaI | GGTCTC | 2 cut(s) | 2489, 3198 |
| BsaWI | WCCGGW | 2 cut(s) | 5627, 5764 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1568, 1598, 3640, 3670 |
| Bse118I | RCCGGY | 2 cut(s) | 2731, 2774 |
| Bse21I | CCTNAGG | 1 cut(s) | 5346 |
| Bse3DI | GCAATG | 2 cut(s) | 1869, 3731 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5284 |
| BseJI | GATNNNNATC | 1 cut(s) | 5284 |
| BseMI | GCAATG | 2 cut(s) | 1869, 3731 |
| BseRI | GAGGAG | 6 cut(s) | 98, 201, 1589, 2994, 3648, 4104 |
| BseSI | GKGCMC | 2 cut(s) | 1643, 1831 |
| BseYI | CCCAGC | 3 cut(s) | 2165, 2623, 4302 |
| BsgI | GTGCAG | 4 cut(s) | 678, 852, 2791, 4356 |
| Bsh1236I | CGCG | 2 cut(s) | 4673, 5436 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1654 |
| BshFI | GGCC | 8 cut(s) | 1629, 1641, 1822, 2638, 2725, 2864, 4330, 4366 |
| BshNI | GGYRCC | 4 cut(s) | 1549, 3034, 3352, 5552 |
| BsiEI | CGRYCG | 1 cut(s) | 1654 |
| BsiHKAI | GWGCWC | 3 cut(s) | 173, 1831, 4560 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1706 |
| BsiSI | CCGG | 5 cut(s) | 302, 2732, 2775, 5628, 5765 |
| BslFI | GGGAC | 3 cut(s) | 97, 1689, 2168 |
| BsmBI | CGTCTC | 3 cut(s) | 367, 1637, 5401 |
| BsmFI | GGGAC | 3 cut(s) | 97, 1689, 2168 |
| BsmI | GAATGC | 2 cut(s) | 3306, 3394 |
| BsnI | GGCC | 8 cut(s) | 1629, 1641, 1822, 2638, 2725, 2864, 4330, 4366 |
| Bso31I | GGTCTC | 2 cut(s) | 2489, 3198 |
| BsoBI | CYCGRG | 1 cut(s) | 1706 |
| Bsp119I | TTCGAA | 2 cut(s) | 4618, 4686 |
| Bsp120I | GGGCCC | 1 cut(s) | 1639 |
| Bsp1286I | GDGCHC | 5 cut(s) | 173, 475, 1643, 1831, 4560 |
| Bsp1407I | TGTACA | 2 cut(s) | 3694, 3937 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2406 |
| Bsp19I | CCATGG | 1 cut(s) | 1906 |
| Bsp68I | TCGCGA | 1 cut(s) | 5436 |
| BspANI | GGCC | 8 cut(s) | 1629, 1641, 1822, 2638, 2725, 2864, 4330, 4366 |
| BspFNI | CGCG | 2 cut(s) | 4673, 5436 |
| BspHI | TCATGA | 2 cut(s) | 4918, 5581 |
| BspMAI | CTGCAG | 4 cut(s) | 2872, 3368, 4242, 5086 |
| BspOI | GCTAGC | 3 cut(s) | 627, 1236, 3597 |
| BspQI | GCTCTTC | 2 cut(s) | 2910, 3081 |
| BspT104I | TTCGAA | 2 cut(s) | 4618, 4686 |
| BspT107I | GGYRCC | 4 cut(s) | 1549, 3034, 3352, 5552 |
| BspTI | CTTAAG | 1 cut(s) | 4319 |
| BspTNI | GGTCTC | 2 cut(s) | 2489, 3198 |
| BsrBI | CCGCTC | 2 cut(s) | 2955, 5787 |
| BsrDI | GCAATG | 2 cut(s) | 1869, 3731 |
| BsrFI | RCCGGY | 2 cut(s) | 2731, 2774 |
| BsrGI | TGTACA | 2 cut(s) | 3694, 3937 |
| BssAI | RCCGGY | 2 cut(s) | 2731, 2774 |
| BssNAI | GTATAC | 5 cut(s) | 1025, 1088, 1151, 4669, 5477 |
| BssSI | CACGAG | 2 cut(s) | 1830, 2334 |
| BssT1I | CCWWGG | 6 cut(s) | 1317, 1906, 2242, 3623, 4352, 5818 |
| Bst1107I | GTATAC | 5 cut(s) | 1025, 1088, 1151, 4669, 5477 |
| Bst2BI | CACGAG | 2 cut(s) | 1830, 2334 |
| Bst6I | CTCTTC | 8 cut(s) | 266, 453, 798, 1457, 2910, 3081, 3114, 3663 |
| BstAFI | CTTAAG | 1 cut(s) | 4319 |
| BstAUI | TGTACA | 2 cut(s) | 3694, 3937 |
| BstBAI | YACGTR | 2 cut(s) | 2573, 2975 |
| BstBI | TTCGAA | 2 cut(s) | 4618, 4686 |
| BstDSI | CCRYGG | 1 cut(s) | 1906 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 2259, 2833, 3890 |
| BstFNI | CGCG | 2 cut(s) | 4673, 5436 |
| BstH2I | RGCGCY | 2 cut(s) | 2318, 2413 |
| BstHHI | GCGC | 3 cut(s) | 1995, 2317, 2412 |
| BstMCI | CGRYCG | 1 cut(s) | 1654 |
| BstNSI | RCATGY | 4 cut(s) | 3761, 3838, 5302, 5610 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4605 |
| BstSLI | GKGCMC | 2 cut(s) | 1643, 1831 |
| BstUI | CGCG | 2 cut(s) | 4673, 5436 |
| BstV2I | GAAGAC | 4 cut(s) | 845, 1554, 4809, 5716 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 362, 1907, 2545 |
| BstZ17I | GTATAC | 5 cut(s) | 1025, 1088, 1151, 4669, 5477 |
| Bsu36I | CCTNAGG | 1 cut(s) | 5346 |
| BsuI | GTATCC | 4 cut(s) | 2545, 2735, 3258, 4290 |
| BsuRI | GGCC | 8 cut(s) | 1629, 1641, 1822, 2638, 2725, 2864, 4330, 4366 |
| BtgI | CCRYGG | 1 cut(s) | 1906 |
| BtgZI | GCGATG | 1 cut(s) | 4688 |
| BtrI | CACGTC | 1 cut(s) | 377 |
| BtuMI | TCGCGA | 1 cut(s) | 5436 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1470, 5012 |
| CciI | TCATGA | 2 cut(s) | 4918, 5581 |
| CfoI | GCGC | 3 cut(s) | 1995, 2317, 2412 |
| Cfr10I | RCCGGY | 2 cut(s) | 2731, 2774 |
| Cfr13I | GGNCC | 5 cut(s) | 1639, 1640, 3443, 4328, 4349 |
| CseI | GACGC | 2 cut(s) | 1476, 5383 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4444, 4479 |
| DraI | TTTAAA | 2 cut(s) | 2055, 4188 |
| EaeI | YGGCCR | 3 cut(s) | 1627, 2862, 4364 |
| Eam1104I | CTCTTC | 8 cut(s) | 266, 453, 798, 1457, 2910, 3081, 3114, 3663 |
| EarI | CTCTTC | 8 cut(s) | 266, 453, 798, 1457, 2910, 3081, 3114, 3663 |
| EciI | GGCGGA | 2 cut(s) | 181, 204 |
| Ecl136II | GAGCTC | 2 cut(s) | 171, 4558 |
| Eco130I | CCWWGG | 6 cut(s) | 1317, 1906, 2242, 3623, 4352, 5818 |
| Eco147I | AGGCCT | 1 cut(s) | 2638 |
| Eco24I | GRGCYC | 4 cut(s) | 173, 475, 1643, 4560 |
| Eco31I | GGTCTC | 2 cut(s) | 2489, 3198 |
| Eco32I | GATATC | 1 cut(s) | 1273 |
| Eco47I | GGWCC | 2 cut(s) | 3443, 4349 |
| Eco47III | AGCGCT | 1 cut(s) | 2316 |
| Eco53kI | GAGCTC | 2 cut(s) | 171, 4558 |
| Eco57I | CTGAAG | 4 cut(s) | 750, 876, 1554, 5796 |
| Eco72I | CACGTG | 1 cut(s) | 2573 |
| Eco81I | CCTNAGG | 1 cut(s) | 5346 |
| Eco88I | CYCGRG | 1 cut(s) | 1706 |
| EcoICRI | GAGCTC | 2 cut(s) | 171, 4558 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 2259, 2833, 3890 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1640, 3443 |
| EcoRI | GAATTC | 1 cut(s) | 2228 |
| EcoRV | GATATC | 1 cut(s) | 1273 |
| EcoT14I | CCWWGG | 6 cut(s) | 1317, 1906, 2242, 3623, 4352, 5818 |
| EcoT22I | ATGCAT | 1 cut(s) | 5421 |
| EcoT38I | GRGCYC | 4 cut(s) | 173, 475, 1643, 4560 |
| ErhI | CCWWGG | 6 cut(s) | 1317, 1906, 2242, 3623, 4352, 5818 |
| Esp3I | CGTCTC | 3 cut(s) | 367, 1637, 5401 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 459, 491, 3238, 3270, 4005, 4037 |
| FaqI | GGGAC | 3 cut(s) | 97, 1689, 2168 |
| FauI | CCCGC | 3 cut(s) | 1550, 2960, 3996 |
| FbaI | TGATCA | 3 cut(s) | 1852, 4129, 4780 |
| FblI | GTMKAC | 6 cut(s) | 1024, 1087, 1150, 2682, 4668, 5476 |
| FriOI | GRGCYC | 4 cut(s) | 173, 475, 1643, 4560 |
| GlaI | GCGC | 3 cut(s) | 1994, 2316, 2411 |
| GsaI | CCCAGC | 3 cut(s) | 2169, 2627, 4306 |
| GsuI | CTGGAG | 2 cut(s) | 3459, 4574 |
| HaeII | RGCGCY | 2 cut(s) | 2318, 2413 |
| HaeIII | GGCC | 8 cut(s) | 1629, 1641, 1822, 2638, 2725, 2864, 4330, 4366 |
| HapII | CCGG | 5 cut(s) | 302, 2732, 2775, 5628, 5765 |
| HgaI | GACGC | 2 cut(s) | 1476, 5383 |
| HhaI | GCGC | 3 cut(s) | 1995, 2317, 2412 |
| Hin6I | GCGC | 3 cut(s) | 1993, 2315, 2410 |
| HinP1I | GCGC | 3 cut(s) | 1993, 2315, 2410 |
| HincII | GTYRAC | 5 cut(s) | 1411, 2683, 3458, 3631, 4710 |
| HindII | GTYRAC | 5 cut(s) | 1411, 2683, 3458, 3631, 4710 |
| HindIII | AAGCTT | 3 cut(s) | 65, 2943, 4316 |
| HpaII | CCGG | 5 cut(s) | 302, 2732, 2775, 5628, 5765 |
| HphI | GGTGA | 8 cut(s) | 1109, 1361, 1544, 1847, 2048, 2411, 4318, 5779 |
| Hpy99I | CGWCG | 1 cut(s) | 2687 |
| HpyCH4IV | ACGT | 9 cut(s) | 345, 376, 1394, 1542, 2059, 2572, 2974, 3091, 4168 |
| HpySE526I | ACGT | 9 cut(s) | 345, 376, 1394, 1542, 2059, 2572, 2974, 3091, 4168 |
| HspAI | GCGC | 3 cut(s) | 1993, 2315, 2410 |
| KpnI | GGTACC | 3 cut(s) | 3038, 3356, 5556 |
| Ksp22I | TGATCA | 3 cut(s) | 1852, 4129, 4780 |
| LguI | GCTCTTC | 2 cut(s) | 2910, 3081 |
| MaeII | ACGT | 9 cut(s) | 345, 376, 1394, 1542, 2059, 2572, 2974, 3091, 4168 |
| MbiI | CCGCTC | 2 cut(s) | 2955, 5787 |
| MhlI | GDGCHC | 5 cut(s) | 173, 475, 1643, 1831, 4560 |
| MlsI | TGGCCA | 1 cut(s) | 4366 |
| MluNI | TGGCCA | 1 cut(s) | 4366 |
| MmeI | TCCRAC | 9 cut(s) | 290, 902, 1924, 2919, 3271, 3448, 4455, 4465, 4546 |
| Mox20I | TGGCCA | 1 cut(s) | 4366 |
| Mph1103I | ATGCAT | 1 cut(s) | 5421 |
| MroXI | GAANNNNTTC | 2 cut(s) | 4450, 4926 |
| MscI | TGGCCA | 1 cut(s) | 4366 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1777, 1980, 2965, 3084, 3809, 4217, 5537 |
| Msp20I | TGGCCA | 1 cut(s) | 4366 |
| MspA1I | CMGCKG | 3 cut(s) | 2867, 5087, 5240 |
| MspCI | CTTAAG | 1 cut(s) | 4319 |
| MspI | CCGG | 5 cut(s) | 302, 2732, 2775, 5628, 5765 |
| Mva1269I | GAATGC | 2 cut(s) | 3306, 3394 |
| MvnI | CGCG | 2 cut(s) | 4673, 5436 |
| NciI | CCSGG | 1 cut(s) | 302 |
| NcoI | CCATGG | 1 cut(s) | 1906 |
| NheI | GCTAGC | 3 cut(s) | 623, 1232, 3593 |
| NmuCI | GTSAC | 6 cut(s) | 449, 1532, 1538, 2568, 3281, 4306 |
| NruI | TCGCGA | 1 cut(s) | 5436 |
| NsiI | ATGCAT | 1 cut(s) | 5421 |
| NspI | RCATGY | 4 cut(s) | 3761, 3838, 5302, 5610 |
| NspV | TTCGAA | 2 cut(s) | 4618, 4686 |
| PacI | TTAATTAA | 1 cut(s) | 3585 |
| PaeI | GCATGC | 1 cut(s) | 3838 |
| PagI | TCATGA | 2 cut(s) | 4918, 5581 |
| PceI | AGGCCT | 1 cut(s) | 2638 |
| PciSI | GCTCTTC | 2 cut(s) | 2910, 3081 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4615 |
| PctI | GAATGC | 2 cut(s) | 3306, 3394 |
| PdmI | GAANNNNTTC | 2 cut(s) | 4450, 4926 |
| PfoI | TCCNGGA | 3 cut(s) | 198, 1615, 2284 |
| Ple19I | CGATCG | 1 cut(s) | 1654 |
| PmaCI | CACGTG | 1 cut(s) | 2573 |
| PmlI | CACGTG | 1 cut(s) | 2573 |
| Ppu21I | YACGTR | 2 cut(s) | 2573, 2975 |
| PpuMI | RGGWCCY | 1 cut(s) | 3443 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4605 |
| PshBI | ATTAAT | 3 cut(s) | 1245, 3581, 4587 |
| Psp124BI | GAGCTC | 2 cut(s) | 173, 4560 |
| Psp1406I | AACGTT | 1 cut(s) | 345 |
| Psp5II | RGGWCCY | 1 cut(s) | 3443 |
| PspCI | CACGTG | 1 cut(s) | 2573 |
| PspFI | CCCAGC | 3 cut(s) | 2165, 2623, 4302 |
| PspOMI | GGGCCC | 1 cut(s) | 1639 |
| PspPI | GGNCC | 5 cut(s) | 1639, 1640, 3443, 4328, 4349 |
| PspPPI | RGGWCCY | 1 cut(s) | 3443 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 3319, 3351, 4533, 4565 |
| PstI | CTGCAG | 4 cut(s) | 2872, 3368, 4242, 5086 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1470, 5012 |
| PvuI | CGATCG | 1 cut(s) | 1654 |
| PvuII | CAGCTG | 2 cut(s) | 5087, 5240 |
| RruI | TCGCGA | 1 cut(s) | 5436 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1777, 1980, 2965, 3084, 3809, 4217, 5537 |
| SacI | GAGCTC | 2 cut(s) | 173, 4560 |
| SalI | GTCGAC | 1 cut(s) | 2681 |
| SapI | GCTCTTC | 2 cut(s) | 2910, 3081 |
| Sau96I | GGNCC | 5 cut(s) | 1639, 1640, 3443, 4328, 4349 |
| ScaI | AGTACT | 1 cut(s) | 5773 |
| SduI | GDGCHC | 5 cut(s) | 173, 475, 1643, 1831, 4560 |
| SfuI | TTCGAA | 2 cut(s) | 4618, 4686 |
| SinI | GGWCC | 2 cut(s) | 3443, 4349 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1777, 1980, 2965, 3084, 3809, 4217, 5537 |
| SmlI | CTYRAG | 3 cut(s) | 2750, 4319, 4629 |
| SmoI | CTYRAG | 3 cut(s) | 2750, 4319, 4629 |
| SphI | GCATGC | 1 cut(s) | 3838 |
| SseBI | AGGCCT | 1 cut(s) | 2638 |
| SspI | AATATT | 1 cut(s) | 5757 |
| SstI | GAGCTC | 2 cut(s) | 173, 4560 |
| StuI | AGGCCT | 1 cut(s) | 2638 |
| StyI | CCWWGG | 6 cut(s) | 1317, 1906, 2242, 3623, 4352, 5818 |
| TaiI | ACGT | 9 cut(s) | 348, 379, 1397, 1545, 2062, 2575, 2977, 3094, 4171 |
| TatI | WGTACW | 6 cut(s) | 907, 3241, 3257, 3694, 3937, 5771 |
| TauI | GCSGC | 2 cut(s) | 2867, 3052 |
| TseFI | GTSAC | 6 cut(s) | 449, 1532, 1538, 2568, 3281, 4306 |
| Tsp45I | GTSAC | 6 cut(s) | 449, 1532, 1538, 2568, 3281, 4306 |
| TspGWI | ACGGA | 9 cut(s) | 180, 691, 758, 2362, 2518, 3137, 4558, 4585, 4979 |
| Vha464I | CTTAAG | 1 cut(s) | 4319 |
| VneI | GTGCAC | 1 cut(s) | 1827 |
| VpaK11BI | GGWCC | 2 cut(s) | 3443, 4349 |
| VspI | ATTAAT | 3 cut(s) | 1245, 3581, 4587 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 2259, 2833, 3890 |
| XapI | RAATTY | 6 cut(s) | 1662, 1862, 2048, 2228, 3344, 4620 |
| XbaI | TCTAGA | 1 cut(s) | 1292 |
| XceI | RCATGY | 4 cut(s) | 3761, 3838, 5302, 5610 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 122, 4052, 4964 |
| XmiI | GTMKAC | 6 cut(s) | 1024, 1087, 1150, 2682, 4668, 5476 |
| XmnI | GAANNNNTTC | 2 cut(s) | 4450, 4926 |
| ZrmI | AGTACT | 1 cut(s) | 5773 |
| Zsp2I | ATGCAT | 1 cut(s) | 5421 |