Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Reverse (-)

26664994 .. 26674727

Gene Structure 9734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG224200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5652 bp

ATGCGATCGTCGCCGAGTGGTGGTAAACAGTGGGGGCAGAGGAATCGGAAGAAGCACAAGAGGCTTGATGCTATTAGTGAAACCGTGTATAAGAGGAATCATCTTCAGGCTAATGATGGGGCGGGGCCGGGTCCCGGGAGCGGTGAATCGGAGCTTCGGAGGAGCTCCAGGGCACGCCGGGCCCCCGTTGTGCTTGATTTGTCCCCGGGGCCGCCGAAGAAGAGGAGGAGGCTTGGTAAGAATGGGAGATTGAGTGGGGGGAAGAATGTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGAGGGTGGAAGTCGAGGCTGAGATCGAGGAGGGGGCATTCGGGGTTTGTGAAAGGGAAGAGGAAGCTTTTTGAAGATGTGAGTGGAGGTAGTAGTGGAGGGAAGGTAGTGGGGAGTGAGCTGGATGATGAGAATGAGGAAGGGTTGGAAGGTGGGAGGCCGAAGGTTGTGAAGTCGAAGAGACCAGGGAGGGTTAGAGCAACGCATGGTTCGGAGCATGAAGAGAATGAGTTGCTTGAAGTTAAGGAGGAAGTTGTGGGGGAAGAAGAGGAGGTGATGAGGGAGGACATGGATAATTTAATGCAGTTGGATTGCGAAGATGATGGTGGAATTGAGAGGGAAACTGTGGAAGGTGATTCCACAAAGATAATTGAGGCGGTGGAGGATTTACAGTTAGAGGAGGAGTGCACTGCCAATGAGAAAGTGGAAGCTGCTGAAACTGCAGGTGGTGGGGAAACCATGGAACAAGTTGATGAACAGTTGGAGCAATCAGTTGATGTGATTGAAGAAGAAAAAGATGATGTGATTGAGGAAGAAAAAGATGATAAACAGATGGAACAAGAGCAAGTACCGTGTGTTGTTGAAGGAGAAGATCAAAGTGAGGCCATAGAAGCTGTTGGAGTTCCCAGAGATGAAGTGGAAGTTGAAGGTTGTCATGATGGGAAGGATTCGCATTTGACTGAGCATGATGGAAAACTTCCAATAGAAGTGAACACTGTGAAGGTGGACATGTCCAAAGATGGAAAGTCACAGATTAAAGAGGGCAGACGATGTGGTTTGTGTGGGGGAGGGACTGATGGTATGCCTCCAAAAATTTTAGCTCAGGATACAGTTGACATTGAGAATGAAGCGTATAGTGGCTCTTCAGCCTCTGAGAAATTTGACTATAACATATGGGATGGTTTTGGTGATGAACCTGGCTGGCTTGGACGTCTCTTGGGTCCAATAAATGATCGTTATGGCATTGCTGGAACATGGGTTCATCAACACTGTGCTGTATGGAGTCCAGAGGTTTACTTTGCGGGTGTAGGATGCTTAAAAAATATAAGGGCCGCTCTGTGCAGAGGGAGAGCGTTAAAATGCACCCGCTGTGGAAGGCCAGGAGCAACTATTGGATGCCGTGTTGATCGGTGTTCAAGAACTTACCACTTGCCTTGTGCACGAGCTATGAATTGCGTATTTGATCATCGCAAGTTTCTTATTGCCTGTACTGGTCATAGGAAACTCTTCCAGCCTCTTGGTTATCAGTACTTGGCCCGCAAAAAGAAATTGAAGGTTAAGAAAATGAAGTTCGAAATCAGAAAGCTATCAAATGATGCTTTGCGAAAGGATATTGAGGCAGAAGAAAAGTGGTTGGAGAATTGTGGCGATGATGAAGAGTTTTTGAAACGTGAAAGCAAGAGGCTACATCGAGATTTGGTGAGAATTGCACCTGTGTACATTGGAGGCTCCGACTCTGAGAGTGGCAAACTGTTTCAGGGTTGGGAATCTGTTGCAGGTCTTCAAAATGTCATTAGATGTATGAAGGAAGTTGTCATATTACCTCTTCTATATCCAGAGTTCTTTGATAGTCTCAGCCTAACACCTCCTAGAGGTGTTCTATTGCATGGGTATCCTGGAACAGGTAAAACTCTTGTTGTGCGGGCATTAATAGGTGCATGTGCACGTGGTGATAGACGAATAGCATATTTTGCTCGTAAAGGTGCTGATTGTTTAGGAAAATATGTTGGTGATGCTGAGCGCCAGCTAAGACTCTTGTTTCAGGTTGCTGAGAGATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGGTTGGCACCTTCCAGAACTAGGCAACAAGATCAGACACATAGTTCAGTTGTGTCAACACTGCTTGCTTTAATGGATGGTTTGAAATCTCGAGGTTCTGTTGTAGTGATTGGTGCTACAAATCGTCCTGATGCTGTAGATCCAGCACTAAGGCGGCCTGGAAGATTTGATAGGGAAATCTATTTTCCACTACCGTCAGAAGAGGACAGAGCTTCCATTCTTTCTGTTCATACTCAAAAATGGCCCAAACCAGTCAGTGGATCCGTGCTTAAGTCGATTGCAAGAGGAACTGCTGGATTTGCTGGTGCAGATCTGCAGGCACTTTGCACTCAAGCAGCCATAATTTCTTTGAAAAGGAATTTCCCTTTGCAAGAAGTTTTGTCTGCTGCTGGAAAGAAAGATTCCGAGTCCAAACGCCTCCCTCTACCTGCCTTTCTAGTGGAGGACAGGGATTGGTTGGAGGCTCTGACATGTTCTCCACCTCCCTGCTCTCGTAGGGAAGTAGGAATAGCTGCTAATGAAGTAATATGCTCTCCTCTTCCAACCCACCTTATCCCATGTCTTCTGCAACCATTATCTACCATGCTCGTATCCCTTTATCTTGATGAACGGCTCTGGTTGCCAACTCCTCTGAGAAGAGCTGCAACAATGATTGAAAGTGTGGTTGTTTCTGCCTTGAATAGGAAAAATATGCTCAGTGATCGCTGGTGGTCCCATATTGATGTTTTACTTCAGGAAGCAGATGTTGCAAAGGACATAGAGAGAAAGCTTTTGCATGCTGGAATCTTACATGGAGATACTGCTCTTGCTGATTCTGATGTTTGCAATGATGATGTTGATGACGGAATTTTGAATTTTGAGCCTTCTGTTAAACATCATGGTGGTACTCGCCCAAGTTTGTTGCAAAACACATTTGTTGCCTCAACGTACAAACCGGGATTTCGGATATTGATTGCTGGAAATCCCAGATCTGGCCAAAGGCATCTTGCTTCCTGCCTTCTTCACTGTTTTGTTGGGAATGTAGAAATCCAGAAGGTTGATTTGGCTACAGTTTTGCTAGAAGGACACGGAGATATGGCGCAAGGGATAACACAAATATTAAAGAAATGTGCCAGCATGGGGTCATGTATAGTTTTCATGCCAAGAATTGATTTGTGGGCAGTGGAGACACCTAATCAAGTAACAGAAGACAGTGAGGCAGATTTATCAAACCATCAATGTCCTGAAAATGAAAAGCATCAACATCCTGAGAATGAAAAGTCATATTTTGCGCGTGGTCTCGAGGAAAGTGTGTCCTTATCGCAGCAATGCAAATCAGAAGAAATGTTAGAGTGCCAAGATGATGTTCCTCAGAGTGCTTCACATGCTTGGAACTTGTTTGTGGAGCAGGTGGAGTCTCTAAGTGTCTCTGCATCCTTAATGATTCTGGCTACATCAGAAGTTCCATGTCCAGTGCTTCCAGTTAGAATAAGGCAGTTCTTTAAGAGTGACATTTTAAATGGCCATCGGTCAGTTCCTGTGAAGCATACAGTTCCCAGGTTTTCTGTGCAGGTTGATGGAAATTTCAACCATGATCTGGTGATCAATCTATCTTCAGCAGAGTTATCAAGGGATCTTGTTCAACAGATTGTTCTGTTAGTTCATCAAACTTCTCACATTCATACAACTTCATGCAAGGAGAGAGGCTTTCATGGTATAAATGGTCAGTCCAAGATGGTTGATCACAGTGCAGATCATGGATCAGCTGATGCAAACAACAATTTAACTCTACCTCCTGTTGATTCTCTTCTTAAAGCTTCTGCACCACCTAACAATATAACTGGAAATGGGAAATCAAGCCTTCTGCTAGCAATATCTTCATTTGGCTATCAGATACTGCGATATCCTCATTTTGCTGAACTTTGTTGGTTCACTTCAAAACTTAAAGAAGGTCCTTCTGCAGACATAAGTGGACCTTGGAAGGGTTGGCCATTCAATTCCTGTATAGTTCGTCCTAACAGCTCGCTAGAAATGGTAACTGTGGCAAAGAATATTAAAAGCAAAGAAAACTTGGGCCTAGTTAGAGGCCTGATTGCTGTTGGTTTATCGGCATATAGAGGTCTCTACACATCTCTCAGAGAAGTCTCTTCTGAGGTACGGAAGGTTCTTGAGATTCTAGTTGCGCAGATCAATGCAAAAGTTCAAGCCGGGAAAGATAGATATCAATATGTTCGCCTTTTGTCGCAAGTGGCTTATCTGGAAGATGTGGTCAATAGCTGGGCATACACCTTGCAGAGTTTAGAGCAGGATGCTCCATTGGCAGATGCTAAGCTTACCGCTCCGAGACTTCCAGACGATAACCATATGGATGATCAAGTTCAAAGCGAGGATTCCAAGCCAAAGGTTACAAGCAAATGCTCCAGTGAGCACGAAGTGCTGGAAATTGTCCCTGAAGGGTTTGATGCTGCAAAAGTTGTCAGTATTGACTTGAATGAACAAGTTGCTGATTTGGGTTGTTCTGAGGTTAGACTTGCAAGTTTAGATTGTTCTGGACAGAAGATTGTCCCTTCTGATTCTACCCTGGATAATTGTCTTAAAGATTCAGATGAAGTTTTGAATGACCAGAATGGGACAAACCCTAAACCCCACGAGTCAGAAAATGACAAACACCATACAGTTGTTGCAGGAGATTCTGAATCTTTGAAATGTCCAAATGGATTTGAATGCACTGAATCTGTTGCTATTCCCGAGGACAGTCCGACTTCTGATATATTTGGCAGCATTAAGCTCTCTAGTTCTTTGACTAGTTACAACAACCTTAATGGTTTGTCCTTGACAGAGGCTGGTAGTAGACATAATGATGGTAAGGCTGATGCTCATGAGGTTACTGCAGACGTCAACTTTCCAAGCACCACCAGTAAAACCAATCTACCTGAGTGCATAGATAAGCCTAATGCAAACTTCTCAAGTAAAACCAATGCTGATGTGCATAATGTTGATGTCAACTTTCCTCCCAAAATCAGTCCCTCTACGAAGTCTGAGTTTGTATGCGTATATCATTGTTGCTCTGAATGCCTAGATACCCTTCACAGTTTGACACAGAAAATTCTTATCGAGGAGTGGCGATCAAATGGGAGCCAATGGACAGTGGAGGATGTTCATGATATTGTGGCATCACTATCTGTGGATCTTCTTTCAGCGGTTAGAAGAATTCATGTTTCCGGAGGTTTCAACAATTCATTTGGTGATAAAAGGAGACACAGAAATACTGAAACATATGAGTGGCCGGAATCAGGAACATGTGATTGCAATATCTCAGAAAATAAGATTCTTTCACCTGCTGAATGTAGATGCCACACCAGCAGGGAGAGCTTTACTCAAAAGACAAATGCTTCCGCAAATACTCATCTCAGGTTTGATTCAAAATTTGTTTTTCGAGATGGTTTGCTGGTTCATATGCATCCAGATAAAGATGTTTCTTTCCACTGTAAATTCGAGACGCTCTGCCTCTGTTCACTTATAGAGTTGATAGTAATGACCAAGTCACCTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

1883

Amino Acids

208.13

Weight (kDa)

5.6

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	425 - 499	6e-08	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	429 - 507	2e-10	PHD-like zinc-binding domain
AAA	PF00004	634 - 769	1.3e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	795 - 827	5.7e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	737, 3493, 5440
AatII	GACGTC	2 cut(s)	1237, 4992
Acc16I	TGCGCA	1 cut(s)	4278
Acc36I	ACCTGC	6 cut(s)	737, 1790, 2551, 3493, 3655, 5440
AccB1I	GGYRCC	1 cut(s)	2122
AccB7I	CCANNNNNTGG	2 cut(s)	2372, 3691
AccBSI	CCGCTC	3 cut(s)	141, 1358, 4433
AccI	GTMKAC	1 cut(s)	4945
AccII	CGCG	1 cut(s)	3388
AccIII	TCCGGA	1 cut(s)	5315
AclWI	GGATC	6 cut(s)	2249, 2370, 2383, 3735, 3862, 5289
AcoI	YGGCCR	4 cut(s)	3088, 3616, 4082, 5378
AcuI	CTGAAG	5 cut(s)	89, 1152, 2831, 3693, 4566
AcvI	CACGTG	1 cut(s)	1970
AcyI	GRCGYC	2 cut(s)	1234, 4989
AdeI	CACNNNGTG	2 cut(s)	1973, 4528
AfaI	GTAC	7 cut(s)	873, 1513, 1553, 1742, 3001, 3044, 4251
AflII	CTTAAG	1 cut(s)	2384
AflIII	ACRYGT	3 cut(s)	1032, 2585, 5393
AhlI	ACTAGT	1 cut(s)	4898
AjnI	CCWGG	8 cut(s)	167, 487, 1219, 1402, 1918, 2272, 3650, 4674
AjuI	GAANNNNNNNTTGG	4 cut(s)	3140, 3172, 3444, 3476
AloI	GAACNNNNNNTCC	2 cut(s)	1266, 1298
Alw21I	GWGCWC	5 cut(s)	167, 713, 1465, 1969, 4524
Alw44I	GTGCAC	3 cut(s)	709, 1461, 1965
AlwI	GGATC	6 cut(s)	2249, 2370, 2383, 3735, 3862, 5289
AlwNI	CAGNNNCTG	4 cut(s)	1175, 3632, 3991, 4937
Ama87I	CYCGRG	5 cut(s)	134, 205, 2205, 3395, 4841
Aor13HI	TCCGGA	1 cut(s)	5315
ApaI	GGGCCC	1 cut(s)	184
ApaLI	GTGCAC	3 cut(s)	709, 1461, 1965
ApeKI	GCWGC	8 cut(s)	734, 2450, 2501, 2627, 2756, 3418, 4559, 4872
AseI	ATTAAT	1 cut(s)	1952
Asp700I	GAANNNNTTC	1 cut(s)	1529
AspLEI	GCGC	4 cut(s)	2046, 3196, 3388, 4279
AsuC2I	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3051, 4303
AsuII	TTCGAA	1 cut(s)	1596
AsuNHI	GCTAGC	1 cut(s)	3961
AvaI	CYCGRG	5 cut(s)	134, 205, 2205, 3395, 4841
AvaII	GGWCC	5 cut(s)	131, 1244, 2826, 4046, 4067
BaeGI	GKGCMC	5 cut(s)	175, 184, 713, 1465, 1969
BalI	TGGCCA	3 cut(s)	3090, 3618, 4084
BamHI	GGATCC	1 cut(s)	2375
BanI	GGYRCC	1 cut(s)	2122
BanII	GRGCYC	2 cut(s)	167, 184
BauI	CACGAG	2 cut(s)	1464, 4742
BbrPI	CACGTG	1 cut(s)	1970
BbsI	GAAGAC	3 cut(s)	1796, 2669, 3309
Bbv12I	GWGCWC	5 cut(s)	167, 713, 1465, 1969, 4524
BbvI	GCAGC	8 cut(s)	721, 2462, 2488, 2614, 2743, 3430, 4546, 4884
BceAI	ACGGC	2 cut(s)	1407, 2741
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	8 cut(s)	169, 489, 1221, 1404, 1920, 2274, 3652, 4676
BciVI	GTATCC	3 cut(s)	1123, 1926, 2716
BclI	TGATCA	4 cut(s)	1486, 3696, 3835, 4465
BcnI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3051, 4303
BcuI	ACTAGT	1 cut(s)	4898
BfmI	CTRYAG	6 cut(s)	744, 2250, 2429, 3162, 4053, 4983
BfoI	RGCGCY	1 cut(s)	2047
BfrI	CTTAAG	1 cut(s)	2384
BfuAI	ACCTGC	6 cut(s)	737, 1790, 2551, 3493, 3655, 5440
BfuI	GTATCC	3 cut(s)	1123, 1926, 2716
BglII	AGATCT	2 cut(s)	2425, 3083
BlpI	GCTNAGC	2 cut(s)	2040, 4422
BmcAI	AGTACT	1 cut(s)	1553
Bme18I	GGWCC	5 cut(s)	131, 1244, 2826, 4046, 4067
BmeT110I	CYCGRG	5 cut(s)	134, 205, 2205, 3395, 4841
BmtI	GCTAGC	1 cut(s)	3965
BpiI	GAAGAC	3 cut(s)	1796, 2669, 3309
BplI	GAGNNNNNCTC	2 cut(s)	5455, 5487
BpmI	CTGGAG	2 cut(s)	151, 4498
Bpu10I	CCTNAGC	1 cut(s)	1125
Bpu1102I	GCTNAGC	2 cut(s)	2040, 4422
Bpu14I	TTCGAA	1 cut(s)	1596
BpuEI	CTTGAG	3 cut(s)	2430, 4283, 5044
BpuMI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3051, 4303
BsaAI	YACGTR	1 cut(s)	1970
BsaBI	GATNNNNATC	1 cut(s)	4314
BsaHI	GRCGYC	2 cut(s)	1234, 4989
BsaI	GGTCTC	3 cut(s)	478, 3398, 4220
BsaWI	WCCGGW	1 cut(s)	5315
Bse1I	ACTGG	7 cut(s)	1519, 2366, 3566, 3575, 3940, 4515, 5010
Bse3DI	GCAATG	3 cut(s)	1266, 2947, 3428
Bse8I	GATNNNNATC	1 cut(s)	4314
BseAI	TCCGGA	1 cut(s)	5315
BseBI	CCWGG	8 cut(s)	169, 489, 1221, 1404, 1920, 2274, 3652, 4676
BseJI	GATNNNNATC	1 cut(s)	4314
BseMI	GCAATG	3 cut(s)	1266, 2947, 3428
BseNI	ACTGG	7 cut(s)	1519, 2366, 3566, 3575, 3940, 4515, 5010
BseSI	GKGCMC	5 cut(s)	175, 184, 713, 1465, 1969
BseXI	GCAGC	8 cut(s)	721, 2462, 2488, 2614, 2743, 3430, 4546, 4884
BseYI	CCCAGC	1 cut(s)	4371
BsgI	GTGCAG	5 cut(s)	1384, 2442, 3683, 3864, 3900
Bsh1236I	CGCG	1 cut(s)	3388
Bsh1285I	CGRYCG	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	2122
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	5 cut(s)	167, 713, 1465, 1969, 4524
BsiHKCI	CYCGRG	5 cut(s)	134, 205, 2205, 3395, 4841
BsiSI	CCGG	8 cut(s)	128, 135, 178, 206, 3050, 4302, 5316, 5381
BslFI	GGGAC	8 cut(s)	117, 187, 1108, 2812, 4526, 4643, 4738, 5103
BsmBI	CGTCTC	2 cut(s)	1241, 5585
BsmFI	GGGAC	8 cut(s)	117, 187, 1108, 2812, 4526, 4643, 4738, 5103
BsmI	GAATGC	3 cut(s)	340, 4823, 5171
Bso31I	GGTCTC	3 cut(s)	478, 3398, 4220
BsoBI	CYCGRG	5 cut(s)	134, 205, 2205, 3395, 4841
Bsp119I	TTCGAA	1 cut(s)	1596
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	7 cut(s)	167, 175, 184, 713, 1465, 1969, 4524
Bsp13I	TCCGGA	1 cut(s)	5315
Bsp1407I	TGTACA	1 cut(s)	1740
Bsp1720I	GCTNAGC	2 cut(s)	2040, 4422
Bsp19I	CCATGG	1 cut(s)	762
BspEI	TCCGGA	1 cut(s)	5315
BspFNI	CGCG	1 cut(s)	3388
BspHI	TCATGA	3 cut(s)	958, 4972, 5254
BspMAI	CTGCAG	4 cut(s)	748, 2433, 4057, 4987
BspMI	ACCTGC	6 cut(s)	737, 1790, 2551, 3493, 3655, 5440
BspOI	GCTAGC	1 cut(s)	3965
BspPI	GGATC	6 cut(s)	2249, 2370, 2383, 3735, 3862, 5289
BspQI	GCTCTTC	2 cut(s)	1171, 2746
BspT104I	TTCGAA	1 cut(s)	1596
BspT107I	GGYRCC	1 cut(s)	2122
BspTI	CTTAAG	1 cut(s)	2384
BspTNI	GGTCTC	3 cut(s)	478, 3398, 4220
BsrBI	CCGCTC	3 cut(s)	141, 1358, 4433
BsrDI	GCAATG	3 cut(s)	1266, 2947, 3428
BsrGI	TGTACA	1 cut(s)	1740
BsrI	ACTGG	7 cut(s)	1519, 2366, 3566, 3575, 3940, 4515, 5010
BssNI	GRCGYC	2 cut(s)	1234, 4989
BssSI	CACGAG	2 cut(s)	1464, 4742
BssT1I	CCWWGG	2 cut(s)	762, 4070
Bst2BI	CACGAG	2 cut(s)	1464, 4742
Bst2UI	CCWGG	8 cut(s)	169, 489, 1221, 1404, 1920, 2274, 3652, 4676
BstACI	GRCGYC	2 cut(s)	1234, 4989
BstAFI	CTTAAG	1 cut(s)	2384
BstAPI	GCANNNNNTGC	3 cut(s)	1994, 2861, 4528
BstAUI	TGTACA	1 cut(s)	1740
BstBAI	YACGTR	1 cut(s)	1970
BstBI	TTCGAA	1 cut(s)	1596
BstDSI	CCRYGG	1 cut(s)	762
BstENI	CCTNNNNNAGG	3 cut(s)	1893, 1923, 2794
BstFNI	CGCG	1 cut(s)	3388
BstH2I	RGCGCY	1 cut(s)	2047
BstHHI	GCGC	4 cut(s)	2046, 3196, 3388, 4279
BstMCI	CGRYCG	1 cut(s)	8
BstNI	CCWGG	8 cut(s)	169, 489, 1221, 1404, 1920, 2274, 3652, 4676
BstNSI	RCATGY	6 cut(s)	1036, 1965, 2589, 2894, 3482, 5397
BstSFI	CTRYAG	6 cut(s)	744, 2250, 2429, 3162, 4053, 4983
BstSLI	GKGCMC	5 cut(s)	175, 184, 713, 1465, 1969
BstUI	CGCG	1 cut(s)	3388
BstV1I	GCAGC	8 cut(s)	721, 2462, 2488, 2614, 2743, 3430, 4546, 4884
BstV2I	GAAGAC	3 cut(s)	1796, 2669, 3309
BstX2I	RGATCY	6 cut(s)	2254, 2375, 2425, 3083, 3727, 5281
BstXI	CCANNNNNNTGG	1 cut(s)	1541
BstYI	RGATCY	6 cut(s)	2254, 2375, 2425, 3083, 3727, 5281
BsuI	GTATCC	3 cut(s)	1123, 1926, 2716
BtgI	CCRYGG	1 cut(s)	762
BtgZI	GCGATG	2 cut(s)	1475, 1686
BtsI	GCAGTG	3 cut(s)	711, 2174, 3282
BveI	ACCTGC	6 cut(s)	737, 1790, 2551, 3493, 3655, 5440
CaiI	CAGNNNCTG	4 cut(s)	1175, 3632, 3991, 4937
CciI	TCATGA	3 cut(s)	958, 4972, 5254
CfoI	GCGC	4 cut(s)	2046, 3196, 3388, 4279
Cfr9I	CCCGGG	2 cut(s)	134, 205
CseI	GACGC	1 cut(s)	5602
Csp6I	GTAC	7 cut(s)	872, 1512, 1552, 1741, 3000, 3043, 4250
CspCI	CAANNNNNGTGG	2 cut(s)	1439, 1474
CviQI	GTAC	7 cut(s)	872, 1512, 1552, 1741, 3000, 3043, 4250
DraI	TTTAAA	1 cut(s)	3612
DraIII	CACNNNGTG	2 cut(s)	1973, 4528
EaeI	YGGCCR	4 cut(s)	3088, 3616, 4082, 5378
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	762, 4070
Eco147I	AGGCCT	1 cut(s)	4182
Eco24I	GRGCYC	2 cut(s)	167, 184
Eco31I	GGTCTC	3 cut(s)	478, 3398, 4220
Eco32I	GATATC	2 cut(s)	3998, 4316
Eco47I	GGWCC	5 cut(s)	131, 1244, 2826, 4046, 4067
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	5 cut(s)	89, 1152, 2831, 3693, 4566
Eco72I	CACGTG	1 cut(s)	1970
Eco88I	CYCGRG	5 cut(s)	134, 205, 2205, 3395, 4841
EcoICRI	GAGCTC	1 cut(s)	165
EcoNI	CCTNNNNNAGG	3 cut(s)	1893, 1923, 2794
EcoO109I	RGGNCCY	3 cut(s)	131, 181, 4046
EcoRI	GAATTC	1 cut(s)	5304
EcoRII	CCWGG	8 cut(s)	167, 487, 1219, 1402, 1918, 2272, 3650, 4674
EcoRV	GATATC	2 cut(s)	3998, 4316
EcoT14I	CCWWGG	2 cut(s)	762, 4070
EcoT22I	ATGCAT	1 cut(s)	5556
EcoT38I	GRGCYC	2 cut(s)	167, 184
ErhI	CCWWGG	2 cut(s)	762, 4070
Esp3I	CGTCTC	2 cut(s)	1241, 5585
FalI	AAGNNNNNCTT	2 cut(s)	4054, 4086
FaqI	GGGAC	8 cut(s)	117, 187, 1108, 2812, 4526, 4643, 4738, 5103
FauI	CCCGC	5 cut(s)	115, 1318, 1397, 1568, 1938
FauNDI	CATATG	4 cut(s)	1196, 4458, 5371, 5550
FbaI	TGATCA	4 cut(s)	1486, 3696, 3835, 4465
FblI	GTMKAC	1 cut(s)	4945
FriOI	GRGCYC	2 cut(s)	167, 184
FspI	TGCGCA	1 cut(s)	4278
GlaI	GCGC	4 cut(s)	2045, 3195, 3387, 4278
GsaI	CCCAGC	1 cut(s)	4375
GsuI	CTGGAG	2 cut(s)	151, 4498
HaeII	RGCGCY	1 cut(s)	2047
HapII	CCGG	8 cut(s)	128, 135, 178, 206, 3050, 4302, 5316, 5381
HgaI	GACGC	1 cut(s)	5602
HhaI	GCGC	4 cut(s)	2046, 3196, 3388, 4279
Hin1I	GRCGYC	2 cut(s)	1234, 4989
Hin6I	GCGC	4 cut(s)	2044, 3194, 3386, 4277
HinP1I	GCGC	4 cut(s)	2044, 3194, 3386, 4277
HincII	GTYRAC	5 cut(s)	1138, 2084, 2172, 4993, 5098
HindII	GTYRAC	5 cut(s)	1138, 2084, 2172, 4993, 5098
HindIII	AAGCTT	4 cut(s)	368, 2882, 3909, 4424
HpaII	CCGG	8 cut(s)	128, 135, 178, 206, 3050, 4302, 5316, 5381
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4IV	ACGT	5 cut(s)	1234, 1693, 1969, 3041, 4989
HpySE526I	ACGT	5 cut(s)	1234, 1693, 1969, 3041, 4989
Hsp92I	GRCGYC	2 cut(s)	1234, 4989
HspAI	GCGC	4 cut(s)	2044, 3194, 3386, 4277
KflI	GGGWCCC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	5315
Ksp22I	TGATCA	4 cut(s)	1486, 3696, 3835, 4465
LguI	GCTCTTC	2 cut(s)	1171, 2746
Lsp1109I	GCAGC	8 cut(s)	721, 2462, 2488, 2614, 2743, 3430, 4546, 4884
MaeII	ACGT	5 cut(s)	1234, 1693, 1969, 3041, 4989
MaeIII	GTNAC	8 cut(s)	1050, 3295, 3602, 4129, 4498, 4901, 4978, 5637
MbiI	CCGCTC	3 cut(s)	141, 1358, 4433
MflI	RGATCY	6 cut(s)	2254, 2375, 2425, 3083, 3727, 5281
MhlI	GDGCHC	7 cut(s)	167, 175, 184, 713, 1465, 1969, 4524
MlsI	TGGCCA	3 cut(s)	3090, 3618, 4084
MluNI	TGGCCA	3 cut(s)	3090, 3618, 4084
MlyI	GAGTC	6 cut(s)	1315, 1751, 2049, 2531, 3518, 4754
MmeI	TCCRAC	9 cut(s)	429, 591, 765, 901, 1638, 1779, 2553, 2681, 4877
Mox20I	TGGCCA	3 cut(s)	3090, 3618, 4084
Mph1103I	ATGCAT	1 cut(s)	5556
MroI	TCCGGA	1 cut(s)	5315
MroXI	GAANNNNTTC	1 cut(s)	1529
MscI	TGGCCA	3 cut(s)	3090, 3618, 4084
MslI	CAYNNNNRTG	5 cut(s)	2835, 2994, 4461, 4953, 5374
Msp20I	TGGCCA	3 cut(s)	3090, 3618, 4084
MspA1I	CMGCKG	3 cut(s)	1392, 3860, 5294
MspCI	CTTAAG	1 cut(s)	2384
MspI	CCGG	8 cut(s)	128, 135, 178, 206, 3050, 4302, 5316, 5381
Mva1269I	GAATGC	3 cut(s)	340, 4823, 5171
MvaI	CCWGG	8 cut(s)	169, 489, 1221, 1404, 1920, 2274, 3652, 4676
MvnI	CGCG	1 cut(s)	3388
NciI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3051, 4303
NcoI	CCATGG	1 cut(s)	762
NdeI	CATATG	4 cut(s)	1196, 4458, 5371, 5550
NheI	GCTAGC	1 cut(s)	3961
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	1050, 3602, 5637
NsbI	TGCGCA	1 cut(s)	4278
NsiI	ATGCAT	1 cut(s)	5556
NspI	RCATGY	6 cut(s)	1036, 1965, 2589, 2894, 3482, 5397
NspV	TTCGAA	1 cut(s)	1596
PaeI	GCATGC	1 cut(s)	2894
PaeR7I	CTCGAG	2 cut(s)	2205, 3395
PagI	TCATGA	3 cut(s)	958, 4972, 5254
PaqCI	CACCTGC	3 cut(s)	737, 3493, 5440
PceI	AGGCCT	1 cut(s)	4182
PciI	ACATGT	3 cut(s)	1032, 2585, 5393
PciSI	GCTCTTC	2 cut(s)	1171, 2746
PctI	GAATGC	3 cut(s)	340, 4823, 5171
PdmI	GAANNNNTTC	1 cut(s)	1529
PflFI	GACNNNGTC	1 cut(s)	5635
PflMI	CCANNNNNTGG	2 cut(s)	2372, 3691
PfoI	TCCNGGA	1 cut(s)	1918
Ple19I	CGATCG	1 cut(s)	8
PleI	GAGTC	6 cut(s)	1314, 1751, 2049, 2530, 3517, 4753
PmaCI	CACGTG	1 cut(s)	1970
PmlI	CACGTG	1 cut(s)	1970
PpsI	GAGTC	6 cut(s)	1314, 1751, 2049, 2530, 3517, 4753
Ppu21I	YACGTR	1 cut(s)	1970
PpuMI	RGGWCCY	2 cut(s)	131, 4046
PscI	ACATGT	3 cut(s)	1032, 2585, 5393
PshBI	ATTAAT	1 cut(s)	1952
Psp124BI	GAGCTC	1 cut(s)	167
Psp5II	RGGWCCY	2 cut(s)	131, 4046
Psp6I	CCWGG	8 cut(s)	167, 487, 1219, 1402, 1918, 2272, 3650, 4674
PspCI	CACGTG	1 cut(s)	1970
PspFI	CCCAGC	1 cut(s)	4371
PspGI	CCWGG	8 cut(s)	167, 487, 1219, 1402, 1918, 2272, 3650, 4674
PspOMI	GGGCCC	1 cut(s)	180
PspPPI	RGGWCCY	2 cut(s)	131, 4046
PsrI	GAACNNNNNNTAC	2 cut(s)	4242, 4274
PstI	CTGCAG	4 cut(s)	748, 2433, 4057, 4987
PstNI	CAGNNNCTG	4 cut(s)	1175, 3632, 3991, 4937
PsuI	RGATCY	6 cut(s)	2254, 2375, 2425, 3083, 3727, 5281
PsyI	GACNNNGTC	1 cut(s)	5635
PvuI	CGATCG	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	3860
RsaI	GTAC	7 cut(s)	873, 1513, 1553, 1742, 3001, 3044, 4251
RsaNI	GTAC	7 cut(s)	872, 1512, 1552, 1741, 3000, 3043, 4250
RseI	CAYNNNNRTG	5 cut(s)	2835, 2994, 4461, 4953, 5374
SacI	GAGCTC	1 cut(s)	167
SapI	GCTCTTC	2 cut(s)	1171, 2746
ScaI	AGTACT	1 cut(s)	1553
SchI	GAGTC	6 cut(s)	1315, 1751, 2049, 2531, 3518, 4754
SduI	GDGCHC	7 cut(s)	167, 175, 184, 713, 1465, 1969, 4524
SfcI	CTRYAG	6 cut(s)	744, 2250, 2429, 3162, 4053, 4983
Sfr274I	CTCGAG	2 cut(s)	2205, 3395
SfuI	TTCGAA	1 cut(s)	1596
SinI	GGWCC	5 cut(s)	131, 1244, 2826, 4046, 4067
SlaI	CTCGAG	2 cut(s)	2205, 3395
SmaI	CCCGGG	2 cut(s)	136, 207
SmiMI	CAYNNNNRTG	5 cut(s)	2835, 2994, 4461, 4953, 5374
SmlI	CTYRAG	6 cut(s)	2205, 2384, 2445, 3395, 4262, 5059
SmoI	CTYRAG	6 cut(s)	2205, 2384, 2445, 3395, 4262, 5059
SpeI	ACTAGT	1 cut(s)	4898
SphI	GCATGC	1 cut(s)	2894
SseBI	AGGCCT	1 cut(s)	4182
SspI	AATATT	3 cut(s)	2097, 3213, 4147
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	4182
StyI	CCWWGG	2 cut(s)	762, 4070
TaiI	ACGT	5 cut(s)	1237, 1696, 1972, 3044, 4992
TaqII	GACCGA	1 cut(s)	3612
TatI	WGTACW	3 cut(s)	1511, 1551, 1740
TauI	GCSGC	3 cut(s)	214, 1358, 2272
TseFI	GTSAC	3 cut(s)	1050, 3602, 5637
TseI	GCWGC	8 cut(s)	734, 2450, 2501, 2627, 2756, 3418, 4559, 4872
Tsp45I	GTSAC	3 cut(s)	1050, 3602, 5637
TspGWI	ACGGA	4 cut(s)	2368, 2973, 3198, 4267
TspMI	CCCGGG	2 cut(s)	134, 205
Tth111I	GACNNNGTC	1 cut(s)	5635
Van91I	CCANNNNNTGG	2 cut(s)	2372, 3691
Vha464I	CTTAAG	1 cut(s)	2384
VneI	GTGCAC	3 cut(s)	709, 1461, 1965
VpaK11BI	GGWCC	5 cut(s)	131, 1244, 2826, 4046, 4067
VspI	ATTAAT	1 cut(s)	1952
XagI	CCTNNNNNAGG	3 cut(s)	1893, 1923, 2794
XceI	RCATGY	6 cut(s)	1036, 1965, 2589, 2894, 3482, 5397
XcmI	CCANNNNNNNNNTGG	2 cut(s)	724, 937
XhoI	CTCGAG	2 cut(s)	2205, 3395
XmaI	CCCGGG	2 cut(s)	134, 205
XmiI	GTMKAC	1 cut(s)	4945
XmnI	GAANNNNTTC	1 cut(s)	1529
ZraI	GACGTC	2 cut(s)	1235, 4990
ZrmI	AGTACT	1 cut(s)	1553
Zsp2I	ATGCAT	1 cut(s)	5556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.