Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Reverse (-)

26144805 .. 26158674

Gene Structure 13870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG225000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5655 bp

ATGCGATCGTCGCCGAGTGGTGGTAAACAGTGGGGGCAGAGGAATCGGAAGAAGCACAAGAGGCTTGATGCTATTAGTGAAACCGTGTATAAGAGGAATCATCTTCAGGCTAATGATGGGGCGGGGCCGGGTCCCGGGAGCGGTGAATCGGAGCTTCGGAGGAGCTCCAGGGCACGCCGGGCCCCCGTTGTGCTTGATTTGTCCCCGGGGCCGCCGAAGAAGAGGAGGAGGCTTGGTAAGAATGGGAGATTGAGTGGGGGGAAGAATGTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGAGGGTGGAAGTCGAGGTTGAGATCGAGGAGGGGGCATTCGGGGTTTGTGAAAGGGAAGAGGAAGCTATTTGAAGATGTGAGTGGAGGTAGTAGTGGAGGGAAGGTAGTGGGGAGTGAGCTGGATGATGAGAATGAGGAAGGGTTGGAAGGTGGGAGGCCGAAGGTTGTGAAGTCGAAGAGACCAGGGAGGGTTAGAGCAACGCATGGTTCGGAGCATGAAGAGAATGAGTTGCTTGAAGTTAAGGAGGAAGTTGTGGGGGAAGAAGAGGAGGTGATGAGGGAGGACATGGATAATTTAATGCAGTTGGATTGCGAAGATGATTGTGGAATTGAGAGGGAAACTGTGGAAGGTGATTCCACAAAGATAATTGAGGCGGTGGAGGATTTACAGTTAGAGGAGGAGTGCACTGGCAATGAGAAAGTGGAAGCTGCTGAAACTGCAGGTGGTGGGGAAACCATGGAACAAGTTGATGAACAGTTGGAGCAATCAGTTGATGTGATTGAAGAAGAAAAAGATGATGTGATTGAGGAAGAAAAAGATGATAAACAGATGGAACAAGAGCAAGTACTGTGTGTTGTTGAAGGAGAAGATCAAAGTGAGGCCATAGAAGCTGTTGGAGTCCCCAGAGATGAAGCGGAAGTTGAAGGTTGTCATGATGGGAAGGATTCACATTTGACTGAGCATGATGGAAAACTTCCAATAGAAGTGAATACTGTGAAGGTGGACATATCCAAAGATGGAAAGTCACAGATTAAAGAGGGCAGACGATGTGGTTTGTGTGGGGGAGGGACTGATGGTATGCCTCCAAAAATTTTAGCTCAGGATACAGTTGACATTGAGAATGAAGCGTATAGTGGCTCTTCAGCCTCTGAGAAATTTGACTATAACATATGGGATGGTTTTGGTGATGAACCTGGCTGGCTTGGACGTCTCTTGGGTCCAATAAATGATCGTTATGGCATTGCTGGAACATGGGTTCATCAACACTGTGCTGTATGGAGTCCAGAGGTTTACTTTGCGGGTGTAGGATGCTTAAAAAATATAAGGGCCGCTCTGTGCAGAGGGAGAGCGTTAAAATGCACCCGCTGTGGAAGGCCAGGAGCAACTATTGGATGCCGTGTTGATCGGTGTTCAAGAACTTACCACTTGCCTTGTGCACGAGCTATGAATTGCGTATTTGATCATCGCAAGTTTCTTATTGCCTGTACTGGTCATAGGAAACTCTTCCAGCCTCTTGGTTATCAGTACTTGGCCCGCAAAAAGAAATTGAAGGTTAAGAAAATGAAGTTCGAAATCAGAAAGCTATCAAATGATGCTTTGCGAAAGGATATTGAGGCAGAAGAAAAGTGGTTGGAGAATTGTGGCGATGATGAAGAGTTTTTGAAACGTGAAAGCAAGAGGCTACATCGAGATTTGGTGAGAATTGCACCTGTGTACATTGGAGGCTCCGACTCTCAGAGTGGCAAACTGTTTCAGGGTTGGGAATCTGTTGCAGGTCTTCAAAATGTCATTAGATGTATGAAGGAAGTTGTCATATTACCTCTTCTATATCCAGAGTTCTTTGATAGTCTCAGCCTAACACCTCCTAGAGGTGTTCTATTGCATGGGTATCCTGGAACAGGTAAAACTCTTGTTGTGCGGGCATTAATAGGTGCATGTGCACGTGGTGATAGACGAATAGCATATTTTGCTCGTAAAGGTGCTGATTGTTTAGGAAAATATGTTGGTGATGCTGAGCGCCAGCTAAGACTCTTGTTTCAGGTTGCTGAGAGATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGGTTGGCACCTTCCAGAACTAGGCAACAAGATCAGACACATAGTTCAGTTGTGTCAACACTGCTTGCTTTAATGGATGGTTTGAAATCTCGAGGTTCTGTTGTAGTGATAGGTGCTACAAATCGTCCTGATGCTGTTGATCCAGCACTAAGGCGGCCTGGAAGATTTGATAGGGAAATCTATTTTCCACTACCGTCAGAAGAGGACAGAGCTTCCATTCTTTCTGTTCATACTCAAAAATGGCCCAAACCAGTCAGTGGATCCGTGCTTAAGTCGATTGCAAGAGGAACTGCTGGATTTGCTGGTGCAGATCTGCAGGCACTTTGCACTCAAGCAGCCATAATTTCTTTGAAAAGGAATTTCCCTTTGCAAGAAGTTTTGTCTGCTGCTGGAAAGAAAGATTCCGAGTCCAAACGCCTCCCTCTACCTGCCTTTCTAGTGGAGGACAGGGATTGGTTGGAGGCTCTGACATGTTCTCCACCTCCCTGCTCTCGTAGGGAAGTAGGAATAGCTGCTAATGAAGTAATATGCTCTCCTCTTCCAACCCACCTTATCCCATGTCTTCTGCAACCATTATCTACCATGCTCGTATCCCTTTATCTTGATGAACGGCTCTGGTTGCCAACTCCTCTGAGAAGAGCTGCAACAATGATTGAAAGTGTGGTTGTTTCTGCCTTGAATAGGAAAAATATGCTTAGTGATCGCTGGTGGTCCCATATTGATGTTTTACTTCAGGAAGCAGATGTTGCAAAGGACATAGAGAGAAAGCTTTTGCATGCTGGAATCTTACATGGAGATACTGCTCTTGCTGATTCTGATGTTTGCAATGATGATGTTGATGATGGAATTTTGAATTTTGAGCCTTCTGTTAAACATCATGGTGGTACTCGCCCAAGTTTGTTGCAAAACACATTTGTTGCCTCAACGTACAAACCGGGATTTCGGATATTGATTGCTGGAAATCCCAGATCTGGCCAAAGGCATCTTGCTTCCTGCCTTCTTCACTGTTTTGTTGGGAATGTAGAAATCCAGAAGGTTGATTTGGCTACAGTTTTGCTAGAAGGACACGGAGATATGGCGCAAGGGATAACACAAATATTAAAGAAATGTGCCAGCATGGGGTCGTGTATAGTTTTCATGCCAAGAATTGATTTGTGGGCAGTGGAGACACCTAATCAAGTAACAGAAGACAGTGATGCAGATTTATCAAACCATCAATGTCCTGAAAATGAAAAGCATCAACATCCTGAGAATGAAAAGTCATATTTTGCGCGTGGTCTGGAGGAAAGTGTGTCCTTATCACAGCAATGCAAATCAGAAGAAATGTTAGAGTGCCAAGATGATGTTGCTCAGAGTGCTTCACATGCTTGGAACTTGTTTGTGGAGCAGGTGGAGTCTCTAAGTGTCTCTGCATCCTTAATGATTCTGGCTACATCAGAAGTTCCATGTCCAGTGCTTCCAGTTAGAATAAGGCAGTTCTTTAAGAGTGACATTTTAAATGGCCATCGGTCAGTTCCTGTGAAGCATACAGTTCCCAGGTTTTCTGTGCAGGTTGATGGAAATTTCAACCATGATCTGGTGATCAATCTATCTTCAGCAGAGTTATCAAGGGATCTTGTTCAACAGATTGTTCTGTTAGTTCATCAAACTTCTCACATTCATACAACTTCATGCAAGGAGAGAGGCTTTCATGGTATAAATGGTCAGTCCAAGATGGTTGATCACAGTGCAGATCATGGATCAGCTGATGCAAACAACAATTTAACTCTACCTCCTGTTGATTCTCTTCTTAAAGCTTCTGCACCACCTAACAATATAACTGGAAATGGGAAATCAAGCCTTCTGCTAGCAATATCTTCATTTGGCTATCAGATACTGCGATATCCTCATTTTGCTGAACTTTGTTGGTTCACTTCAAAACTTAAAGAAGGTCCTTCTGCAGACATAAGTGGACCTTGGAAGGGTTGGCCATTCAATTCCTGTATAGTTCGTCCTAACAGCTCGCTAGAAATGGTAACTGTGGCAAAGAATATTAAAAGCAAAGAAAACTTGGGCCTAGTTAGAGGCCTGATTGCTGTTGGTTTATCGGCATATAGAGGTCTCTACACATCTCTCAGAGAAGTCTCTTCTGAGGTACGGAAGGTTCTTGAGATTCTAGTTGCGCAGATCAATGCAAAAGTTCAAGCCGGGAAAGATAGATATCAATATGTTCGCCTTTTGTCGCAAGTGGCTTATCTGGAAGATGTGGTCAATAGCTGGGCATACACCTTGCAGAGTTTAGAGCAGGATGCTCCATTGGCAGATGCTAAGCTTACTGCTCCGAGACTTCCAGACGATAACCATATGGATGATCAAGTTCAAAGCGAGGATTCCAAGCCAAAGGTTACAAGCAAATGCTCCAGTGAGCACGAAGTGCTGGAAATTGTCCCTGAAGGGTTTGATGCTGCAAAAGTTGTCAGTATTGACTTGAATGAACAAGTTGCTGATTTGGGTTGTTCTGAGGTTAGACTTGCAAGTTTAGATTGTTCTGGACAGAAGATTGTCCCATCTGATTCTACCCTGGATAATTGTCTTAAAGATTCAGATGAAGTTTTGAATGACCAGAATGGGACAAACCCTAAACCCCACGAGTCAGAAAATGACAAACACCATACAGTTGTTGCAGGAGATTCTCAATCTTTGAAATGTCCAAATGGATTTGAATGCACTGGATCTGTTGCTATTCCCGAGGACAGTCCGACTTCTGATATATTTGGCAGCATTAAGCTCTCTAGTTCTTTGACCAGTTACAACAATCTTAATGGTTTGTCCTTGACAGAGGCTGGTAGTAGACATAATGATGGTAAGGCTGATGCTCATGAGGTTACTGCAGACGTCAACGTTCCAAGCACCACCAGTAAAACCAATCTGCCTGAGTGCATAGATAAGCCTGATGCAAACTTCTCAAGTAAAACCAATGCTGATGTGCATAATGTTGATGTCAACTTCCCTCCCAAAATCAGTCCCTCTACGAAGTCTGAGTTTGTATGCGTATATCATTGTTGCTCTGAATGCCTAGATACCCTTCACAGTTTGACACAGAAAATTCTTATCGAGGAGTGGCGATCAAATGGGAGCCAATGGACAGTGGAGGATGTTCATGATATTGTGGCATCACTATCTGTGGATCTTCTTTCAGCGGTTAGAAGAATTCATGTTTCCGGAGGTTTCAACAGTTCATTTGGTGATAAAAGGAGACACAGAAATACTGAAACATATGAGTGGCCGGAATCAGGAACATGTGATTGCAATATCTCAGAAAATAAGATTCTTTCACCTGCTGAATGTAGATGCCACACCAGCAGGGAGAGCTTTACTCAAAAGACAAATGCTTCCGCAAATACCCATCTCAGGTTTGATTCAAAATTTGTTTTTCGAGATGGTTTGCTGGTTCATATGCATCCAGATAAAGATGTTTCTTTCCACTGTAAATTCGAGACGCTCTGCCTCTGTTCACTTATAGAGTTGATAGTAATGACCAAGTCACCTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

1884

Amino Acids

208.08

Weight (kDa)

5.62

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	426 - 500	6e-08	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	430 - 508	2e-10	PHD-like zinc-binding domain
AAA	PF00004	635 - 770	1.3e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	796 - 828	5.7e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	740, 3496, 5443
AatII	GACGTC	2 cut(s)	1240, 4995
Acc16I	TGCGCA	1 cut(s)	4281
Acc36I	ACCTGC	6 cut(s)	740, 1793, 2554, 3496, 3658, 5443
AccB1I	GGYRCC	1 cut(s)	2125
AccB7I	CCANNNNNTGG	2 cut(s)	2375, 3694
AccBSI	CCGCTC	2 cut(s)	141, 1361
AccI	GTMKAC	1 cut(s)	4948
AccII	CGCG	1 cut(s)	3391
AccIII	TCCGGA	1 cut(s)	5318
AclI	AACGTT	1 cut(s)	4998
AclWI	GGATC	7 cut(s)	2252, 2373, 2386, 3738, 3865, 4837, 5292
AcoI	YGGCCR	4 cut(s)	3091, 3619, 4085, 5381
AcuI	CTGAAG	5 cut(s)	89, 1155, 2834, 3696, 4569
AcvI	CACGTG	1 cut(s)	1973
AcyI	GRCGYC	2 cut(s)	1237, 4992
AdeI	CACNNNGTG	2 cut(s)	1976, 4531
AfaI	GTAC	7 cut(s)	876, 1516, 1556, 1745, 3004, 3047, 4254
AflII	CTTAAG	1 cut(s)	2387
AflIII	ACRYGT	2 cut(s)	2588, 5396
AjnI	CCWGG	8 cut(s)	167, 490, 1222, 1405, 1921, 2275, 3653, 4677
AjuI	GAANNNNNNNTTGG	2 cut(s)	3143, 3175
AloI	GAACNNNNNNTCC	2 cut(s)	1269, 1301
Alw21I	GWGCWC	5 cut(s)	167, 716, 1468, 1972, 4527
Alw44I	GTGCAC	3 cut(s)	712, 1464, 1968
AlwI	GGATC	7 cut(s)	2252, 2373, 2386, 3738, 3865, 4837, 5292
AlwNI	CAGNNNCTG	4 cut(s)	1178, 3635, 3994, 4940
Ama87I	CYCGRG	4 cut(s)	134, 205, 2208, 4844
Aor13HI	TCCGGA	1 cut(s)	5318
ApaI	GGGCCC	1 cut(s)	184
ApaLI	GTGCAC	3 cut(s)	712, 1464, 1968
ApeKI	GCWGC	7 cut(s)	737, 2453, 2504, 2630, 2759, 4562, 4875
AseI	ATTAAT	1 cut(s)	1955
Asp700I	GAANNNNTTC	1 cut(s)	1532
AspLEI	GCGC	4 cut(s)	2049, 3199, 3391, 4282
AsuC2I	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3054, 4306
AsuII	TTCGAA	1 cut(s)	1599
AsuNHI	GCTAGC	1 cut(s)	3964
AvaI	CYCGRG	4 cut(s)	134, 205, 2208, 4844
AvaII	GGWCC	5 cut(s)	131, 1247, 2829, 4049, 4070
BaeGI	GKGCMC	5 cut(s)	175, 184, 716, 1468, 1972
BalI	TGGCCA	3 cut(s)	3093, 3621, 4087
BamHI	GGATCC	1 cut(s)	2378
BanI	GGYRCC	1 cut(s)	2125
BanII	GRGCYC	2 cut(s)	167, 184
BauI	CACGAG	2 cut(s)	1467, 4745
BbrPI	CACGTG	1 cut(s)	1973
BbsI	GAAGAC	3 cut(s)	1799, 2672, 3312
Bbv12I	GWGCWC	5 cut(s)	167, 716, 1468, 1972, 4527
BbvI	GCAGC	7 cut(s)	724, 2465, 2491, 2617, 2746, 4549, 4887
BceAI	ACGGC	2 cut(s)	1410, 2744
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	8 cut(s)	169, 492, 1224, 1407, 1923, 2277, 3655, 4679
BciVI	GTATCC	3 cut(s)	1126, 1929, 2719
BclI	TGATCA	4 cut(s)	1489, 3699, 3838, 4468
BcnI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3054, 4306
BfmI	CTRYAG	5 cut(s)	747, 2432, 3165, 4056, 4986
BfoI	RGCGCY	1 cut(s)	2050
BfrI	CTTAAG	1 cut(s)	2387
BfuAI	ACCTGC	6 cut(s)	740, 1793, 2554, 3496, 3658, 5443
BfuI	GTATCC	3 cut(s)	1126, 1929, 2719
BglII	AGATCT	2 cut(s)	2428, 3086
BlpI	GCTNAGC	2 cut(s)	2043, 4425
BmcAI	AGTACT	2 cut(s)	876, 1556
Bme18I	GGWCC	5 cut(s)	131, 1247, 2829, 4049, 4070
BmeT110I	CYCGRG	4 cut(s)	134, 205, 2208, 4844
BmtI	GCTAGC	1 cut(s)	3968
BpiI	GAAGAC	3 cut(s)	1799, 2672, 3312
BplI	GAGNNNNNCTC	2 cut(s)	5458, 5490
BpmI	CTGGAG	3 cut(s)	151, 3419, 4501
Bpu10I	CCTNAGC	1 cut(s)	1128
Bpu1102I	GCTNAGC	2 cut(s)	2043, 4425
Bpu14I	TTCGAA	1 cut(s)	1599
BpuEI	CTTGAG	3 cut(s)	2433, 4286, 5047
BpuMI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3054, 4306
BsaAI	YACGTR	1 cut(s)	1973
BsaBI	GATNNNNATC	1 cut(s)	4317
BsaHI	GRCGYC	2 cut(s)	1237, 4992
BsaI	GGTCTC	2 cut(s)	481, 4223
BsaWI	WCCGGW	1 cut(s)	5318
Bse3DI	GCAATG	4 cut(s)	727, 1269, 2950, 3431
Bse8I	GATNNNNATC	1 cut(s)	4317
BseAI	TCCGGA	1 cut(s)	5318
BseBI	CCWGG	8 cut(s)	169, 492, 1224, 1407, 1923, 2277, 3655, 4679
BseJI	GATNNNNATC	1 cut(s)	4317
BseMI	GCAATG	4 cut(s)	727, 1269, 2950, 3431
BseSI	GKGCMC	5 cut(s)	175, 184, 716, 1468, 1972
BseXI	GCAGC	7 cut(s)	724, 2465, 2491, 2617, 2746, 4549, 4887
BseYI	CCCAGC	1 cut(s)	4374
BsgI	GTGCAG	5 cut(s)	1387, 2445, 3686, 3867, 3903
Bsh1236I	CGCG	1 cut(s)	3391
Bsh1285I	CGRYCG	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	2125
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	5 cut(s)	167, 716, 1468, 1972, 4527
BsiHKCI	CYCGRG	4 cut(s)	134, 205, 2208, 4844
BsiSI	CCGG	8 cut(s)	128, 135, 178, 206, 3053, 4305, 5319, 5384
BslFI	GGGAC	9 cut(s)	117, 187, 914, 1111, 2815, 4529, 4646, 4741, 5106
BsmBI	CGTCTC	2 cut(s)	1244, 5588
BsmFI	GGGAC	9 cut(s)	117, 187, 914, 1111, 2815, 4529, 4646, 4741, 5106
BsmI	GAATGC	3 cut(s)	343, 4826, 5174
Bso31I	GGTCTC	2 cut(s)	481, 4223
BsoBI	CYCGRG	4 cut(s)	134, 205, 2208, 4844
Bsp119I	TTCGAA	1 cut(s)	1599
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	7 cut(s)	167, 175, 184, 716, 1468, 1972, 4527
Bsp13I	TCCGGA	1 cut(s)	5318
Bsp1407I	TGTACA	1 cut(s)	1743
Bsp1720I	GCTNAGC	2 cut(s)	2043, 4425
Bsp19I	CCATGG	1 cut(s)	765
BspEI	TCCGGA	1 cut(s)	5318
BspFNI	CGCG	1 cut(s)	3391
BspHI	TCATGA	3 cut(s)	961, 4975, 5257
BspMAI	CTGCAG	4 cut(s)	751, 2436, 4060, 4990
BspMI	ACCTGC	6 cut(s)	740, 1793, 2554, 3496, 3658, 5443
BspOI	GCTAGC	1 cut(s)	3968
BspPI	GGATC	7 cut(s)	2252, 2373, 2386, 3738, 3865, 4837, 5292
BspQI	GCTCTTC	2 cut(s)	1174, 2749
BspT104I	TTCGAA	1 cut(s)	1599
BspT107I	GGYRCC	1 cut(s)	2125
BspTI	CTTAAG	1 cut(s)	2387
BspTNI	GGTCTC	2 cut(s)	481, 4223
BsrBI	CCGCTC	2 cut(s)	141, 1361
BsrDI	GCAATG	4 cut(s)	727, 1269, 2950, 3431
BsrGI	TGTACA	1 cut(s)	1743
BssNI	GRCGYC	2 cut(s)	1237, 4992
BssSI	CACGAG	2 cut(s)	1467, 4745
BssT1I	CCWWGG	2 cut(s)	765, 4073
Bst2BI	CACGAG	2 cut(s)	1467, 4745
Bst2UI	CCWGG	8 cut(s)	169, 492, 1224, 1407, 1923, 2277, 3655, 4679
BstACI	GRCGYC	2 cut(s)	1237, 4992
BstAFI	CTTAAG	1 cut(s)	2387
BstAPI	GCANNNNNTGC	3 cut(s)	1997, 2864, 4531
BstAUI	TGTACA	1 cut(s)	1743
BstBAI	YACGTR	1 cut(s)	1973
BstBI	TTCGAA	1 cut(s)	1599
BstDSI	CCRYGG	1 cut(s)	765
BstENI	CCTNNNNNAGG	3 cut(s)	1896, 1926, 2797
BstFNI	CGCG	1 cut(s)	3391
BstH2I	RGCGCY	1 cut(s)	2050
BstHHI	GCGC	4 cut(s)	2049, 3199, 3391, 4282
BstMCI	CGRYCG	1 cut(s)	8
BstNI	CCWGG	8 cut(s)	169, 492, 1224, 1407, 1923, 2277, 3655, 4679
BstNSI	RCATGY	5 cut(s)	1968, 2592, 2897, 3485, 5400
BstSFI	CTRYAG	5 cut(s)	747, 2432, 3165, 4056, 4986
BstSLI	GKGCMC	5 cut(s)	175, 184, 716, 1468, 1972
BstUI	CGCG	1 cut(s)	3391
BstV1I	GCAGC	7 cut(s)	724, 2465, 2491, 2617, 2746, 4549, 4887
BstV2I	GAAGAC	3 cut(s)	1799, 2672, 3312
BstX2I	RGATCY	6 cut(s)	2378, 2428, 3086, 3730, 4829, 5284
BstXI	CCANNNNNNTGG	1 cut(s)	1544
BstYI	RGATCY	6 cut(s)	2378, 2428, 3086, 3730, 4829, 5284
BsuI	GTATCC	3 cut(s)	1126, 1929, 2719
BtgI	CCRYGG	1 cut(s)	765
BtgZI	GCGATG	2 cut(s)	1478, 1689
BtsI	GCAGTG	2 cut(s)	2177, 3285
BveI	ACCTGC	6 cut(s)	740, 1793, 2554, 3496, 3658, 5443
CaiI	CAGNNNCTG	4 cut(s)	1178, 3635, 3994, 4940
CciI	TCATGA	3 cut(s)	961, 4975, 5257
CfoI	GCGC	4 cut(s)	2049, 3199, 3391, 4282
Cfr9I	CCCGGG	2 cut(s)	134, 205
CseI	GACGC	1 cut(s)	5605
Csp6I	GTAC	7 cut(s)	875, 1515, 1555, 1744, 3003, 3046, 4253
CspCI	CAANNNNNGTGG	2 cut(s)	1442, 1477
CviQI	GTAC	7 cut(s)	875, 1515, 1555, 1744, 3003, 3046, 4253
DraI	TTTAAA	1 cut(s)	3615
DraIII	CACNNNGTG	2 cut(s)	1976, 4531
EaeI	YGGCCR	4 cut(s)	3091, 3619, 4085, 5381
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	765, 4073
Eco147I	AGGCCT	1 cut(s)	4185
Eco24I	GRGCYC	2 cut(s)	167, 184
Eco31I	GGTCTC	2 cut(s)	481, 4223
Eco32I	GATATC	2 cut(s)	4001, 4319
Eco47I	GGWCC	5 cut(s)	131, 1247, 2829, 4049, 4070
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	5 cut(s)	89, 1155, 2834, 3696, 4569
Eco72I	CACGTG	1 cut(s)	1973
Eco88I	CYCGRG	4 cut(s)	134, 205, 2208, 4844
EcoICRI	GAGCTC	1 cut(s)	165
EcoNI	CCTNNNNNAGG	3 cut(s)	1896, 1926, 2797
EcoO109I	RGGNCCY	3 cut(s)	131, 181, 4049
EcoRI	GAATTC	1 cut(s)	5307
EcoRII	CCWGG	8 cut(s)	167, 490, 1222, 1405, 1921, 2275, 3653, 4677
EcoRV	GATATC	2 cut(s)	4001, 4319
EcoT14I	CCWWGG	2 cut(s)	765, 4073
EcoT22I	ATGCAT	1 cut(s)	5559
EcoT38I	GRGCYC	2 cut(s)	167, 184
ErhI	CCWWGG	2 cut(s)	765, 4073
Esp3I	CGTCTC	2 cut(s)	1244, 5588
FalI	AAGNNNNNCTT	2 cut(s)	4057, 4089
FaqI	GGGAC	9 cut(s)	117, 187, 914, 1111, 2815, 4529, 4646, 4741, 5106
FauI	CCCGC	5 cut(s)	115, 1321, 1400, 1571, 1941
FauNDI	CATATG	4 cut(s)	1199, 4461, 5374, 5553
FbaI	TGATCA	4 cut(s)	1489, 3699, 3838, 4468
FblI	GTMKAC	1 cut(s)	4948
FriOI	GRGCYC	2 cut(s)	167, 184
FspI	TGCGCA	1 cut(s)	4281
GlaI	GCGC	4 cut(s)	2048, 3198, 3390, 4281
GsaI	CCCAGC	1 cut(s)	4378
GsuI	CTGGAG	3 cut(s)	151, 3419, 4501
HaeII	RGCGCY	1 cut(s)	2050
HapII	CCGG	8 cut(s)	128, 135, 178, 206, 3053, 4305, 5319, 5384
HgaI	GACGC	1 cut(s)	5605
HhaI	GCGC	4 cut(s)	2049, 3199, 3391, 4282
Hin1I	GRCGYC	2 cut(s)	1237, 4992
Hin6I	GCGC	4 cut(s)	2047, 3197, 3389, 4280
HinP1I	GCGC	4 cut(s)	2047, 3197, 3389, 4280
HincII	GTYRAC	5 cut(s)	1141, 2087, 2175, 4996, 5101
HindII	GTYRAC	5 cut(s)	1141, 2087, 2175, 4996, 5101
HindIII	AAGCTT	3 cut(s)	2885, 3912, 4427
HpaII	CCGG	8 cut(s)	128, 135, 178, 206, 3053, 4305, 5319, 5384
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4IV	ACGT	6 cut(s)	1237, 1696, 1972, 3044, 4992, 4998
HpySE526I	ACGT	6 cut(s)	1237, 1696, 1972, 3044, 4992, 4998
Hsp92I	GRCGYC	2 cut(s)	1237, 4992
HspAI	GCGC	4 cut(s)	2047, 3197, 3389, 4280
KflI	GGGWCCC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	5318
Ksp22I	TGATCA	4 cut(s)	1489, 3699, 3838, 4468
LguI	GCTCTTC	2 cut(s)	1174, 2749
Lsp1109I	GCAGC	7 cut(s)	724, 2465, 2491, 2617, 2746, 4549, 4887
MaeII	ACGT	6 cut(s)	1237, 1696, 1972, 3044, 4992, 4998
MaeIII	GTNAC	8 cut(s)	1053, 3298, 3605, 4132, 4501, 4904, 4981, 5640
MbiI	CCGCTC	2 cut(s)	141, 1361
MflI	RGATCY	6 cut(s)	2378, 2428, 3086, 3730, 4829, 5284
MhlI	GDGCHC	7 cut(s)	167, 175, 184, 716, 1468, 1972, 4527
MlsI	TGGCCA	3 cut(s)	3093, 3621, 4087
MluNI	TGGCCA	3 cut(s)	3093, 3621, 4087
MlyI	GAGTC	7 cut(s)	936, 1318, 1754, 2052, 2534, 3521, 4757
MmeI	TCCRAC	9 cut(s)	432, 594, 768, 904, 1641, 1782, 2556, 2684, 4880
Mox20I	TGGCCA	3 cut(s)	3093, 3621, 4087
Mph1103I	ATGCAT	1 cut(s)	5559
MroI	TCCGGA	1 cut(s)	5318
MroXI	GAANNNNTTC	1 cut(s)	1532
MscI	TGGCCA	3 cut(s)	3093, 3621, 4087
MslI	CAYNNNNRTG	6 cut(s)	2838, 2997, 3424, 4464, 4956, 5377
Msp20I	TGGCCA	3 cut(s)	3093, 3621, 4087
MspA1I	CMGCKG	3 cut(s)	1395, 3863, 5297
MspCI	CTTAAG	1 cut(s)	2387
MspI	CCGG	8 cut(s)	128, 135, 178, 206, 3053, 4305, 5319, 5384
Mva1269I	GAATGC	3 cut(s)	343, 4826, 5174
MvaI	CCWGG	8 cut(s)	169, 492, 1224, 1407, 1923, 2277, 3655, 4679
MvnI	CGCG	1 cut(s)	3391
NciI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3054, 4306
NcoI	CCATGG	1 cut(s)	765
NdeI	CATATG	4 cut(s)	1199, 4461, 5374, 5553
NheI	GCTAGC	1 cut(s)	3964
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	1053, 3605, 5640
NsbI	TGCGCA	1 cut(s)	4281
NsiI	ATGCAT	1 cut(s)	5559
NspI	RCATGY	5 cut(s)	1968, 2592, 2897, 3485, 5400
NspV	TTCGAA	1 cut(s)	1599
PaeI	GCATGC	1 cut(s)	2897
PaeR7I	CTCGAG	1 cut(s)	2208
PagI	TCATGA	3 cut(s)	961, 4975, 5257
PaqCI	CACCTGC	3 cut(s)	740, 3496, 5443
PceI	AGGCCT	1 cut(s)	4185
PciI	ACATGT	2 cut(s)	2588, 5396
PciSI	GCTCTTC	2 cut(s)	1174, 2749
PctI	GAATGC	3 cut(s)	343, 4826, 5174
PdmI	GAANNNNTTC	1 cut(s)	1532
PflFI	GACNNNGTC	1 cut(s)	5638
PflMI	CCANNNNNTGG	2 cut(s)	2375, 3694
PfoI	TCCNGGA	1 cut(s)	1921
Ple19I	CGATCG	1 cut(s)	8
PleI	GAGTC	7 cut(s)	935, 1317, 1754, 2052, 2533, 3520, 4756
PmaCI	CACGTG	1 cut(s)	1973
PmlI	CACGTG	1 cut(s)	1973
PpsI	GAGTC	7 cut(s)	935, 1317, 1754, 2052, 2533, 3520, 4756
Ppu21I	YACGTR	1 cut(s)	1973
PpuMI	RGGWCCY	2 cut(s)	131, 4049
PscI	ACATGT	2 cut(s)	2588, 5396
PshBI	ATTAAT	1 cut(s)	1955
Psp124BI	GAGCTC	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	4998
Psp5II	RGGWCCY	2 cut(s)	131, 4049
Psp6I	CCWGG	8 cut(s)	167, 490, 1222, 1405, 1921, 2275, 3653, 4677
PspCI	CACGTG	1 cut(s)	1973
PspFI	CCCAGC	1 cut(s)	4374
PspGI	CCWGG	8 cut(s)	167, 490, 1222, 1405, 1921, 2275, 3653, 4677
PspOMI	GGGCCC	1 cut(s)	180
PspPPI	RGGWCCY	2 cut(s)	131, 4049
PsrI	GAACNNNNNNTAC	2 cut(s)	4245, 4277
PstI	CTGCAG	4 cut(s)	751, 2436, 4060, 4990
PstNI	CAGNNNCTG	4 cut(s)	1178, 3635, 3994, 4940
PsuI	RGATCY	6 cut(s)	2378, 2428, 3086, 3730, 4829, 5284
PsyI	GACNNNGTC	1 cut(s)	5638
PvuI	CGATCG	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	3863
RsaI	GTAC	7 cut(s)	876, 1516, 1556, 1745, 3004, 3047, 4254
RsaNI	GTAC	7 cut(s)	875, 1515, 1555, 1744, 3003, 3046, 4253
RseI	CAYNNNNRTG	6 cut(s)	2838, 2997, 3424, 4464, 4956, 5377
SacI	GAGCTC	1 cut(s)	167
SapI	GCTCTTC	2 cut(s)	1174, 2749
ScaI	AGTACT	2 cut(s)	876, 1556
SchI	GAGTC	7 cut(s)	936, 1318, 1754, 2052, 2534, 3521, 4757
SduI	GDGCHC	7 cut(s)	167, 175, 184, 716, 1468, 1972, 4527
SfcI	CTRYAG	5 cut(s)	747, 2432, 3165, 4056, 4986
Sfr274I	CTCGAG	1 cut(s)	2208
SfuI	TTCGAA	1 cut(s)	1599
SinI	GGWCC	5 cut(s)	131, 1247, 2829, 4049, 4070
SlaI	CTCGAG	1 cut(s)	2208
SmaI	CCCGGG	2 cut(s)	136, 207
SmiMI	CAYNNNNRTG	6 cut(s)	2838, 2997, 3424, 4464, 4956, 5377
SmlI	CTYRAG	5 cut(s)	2208, 2387, 2448, 4265, 5062
SmoI	CTYRAG	5 cut(s)	2208, 2387, 2448, 4265, 5062
SphI	GCATGC	1 cut(s)	2897
SseBI	AGGCCT	1 cut(s)	4185
SspI	AATATT	3 cut(s)	2100, 3216, 4150
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	4185
StyI	CCWWGG	2 cut(s)	765, 4073
TaiI	ACGT	6 cut(s)	1240, 1699, 1975, 3047, 4995, 5001
TaqII	GACCGA	1 cut(s)	3615
TatI	WGTACW	4 cut(s)	874, 1514, 1554, 1743
TauI	GCSGC	3 cut(s)	214, 1361, 2275
TseFI	GTSAC	3 cut(s)	1053, 3605, 5640
TseI	GCWGC	7 cut(s)	737, 2453, 2504, 2630, 2759, 4562, 4875
Tsp45I	GTSAC	3 cut(s)	1053, 3605, 5640
TspGWI	ACGGA	3 cut(s)	2371, 3201, 4270
TspMI	CCCGGG	2 cut(s)	134, 205
Tth111I	GACNNNGTC	1 cut(s)	5638
Van91I	CCANNNNNTGG	2 cut(s)	2375, 3694
Vha464I	CTTAAG	1 cut(s)	2387
VneI	GTGCAC	3 cut(s)	712, 1464, 1968
VpaK11BI	GGWCC	5 cut(s)	131, 1247, 2829, 4049, 4070
VspI	ATTAAT	1 cut(s)	1955
XagI	CCTNNNNNAGG	3 cut(s)	1896, 1926, 2797
XceI	RCATGY	5 cut(s)	1968, 2592, 2897, 3485, 5400
XhoI	CTCGAG	1 cut(s)	2208
XmaI	CCCGGG	2 cut(s)	134, 205
XmiI	GTMKAC	1 cut(s)	4948
XmnI	GAANNNNTTC	1 cut(s)	1532
ZraI	GACGTC	2 cut(s)	1238, 4993
ZrmI	AGTACT	2 cut(s)	876, 1556
Zsp2I	ATGCAT	1 cut(s)	5559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.