Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Reverse (-)

26035474 .. 26045187

Gene Structure 9714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG229800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5649 bp

ATGCGATCGTCGCCGAGTGGTGGTAAACAGTGGGGGCAGAGGAATCGGAAGAAGCACAAGAGGCTTGATGCTATTAGTGAAACCGTGTATAAGAGGAATCATCTTCAGGCTAATGATGGGGCGGGGCCGGGTCCCGGGAGCGGTGAATCGGAGCTTCGGAGGAGCTCCAGGGCACGCCGGGCCCCCGTTGTGCTTGATTTGTCCCCGGGGCCGCCGAAGAAGAGGAGGAGGCTTGGTAAGAATGGGAGATTGAGTGGGGGGAAGAATGTGAAGGAGGAGGAGGAGGAGGAGGTGGTGGAGGGAGGGTGGAAGTCGAGGTTGAGATCGAGGAGGGGGCATTCAGGCTTTGTGAAAGGGAAGAGGAAGCTATTTGAAGATGTGAGTGGAGGTAGTAGTGGAGGGAAGGTAGTGGGGAGTGAGCTGGATGATGAGAATGAGGAAGGGTTGGAAGGTGGGAGGCCGAAGGTTGTGAAGTCGAAGAGACCAGGGAGGGTTAGAGCAACGCATGGTTCGGAGCATGAAGAGAATGAGTTGCTTGAAGTTAAGGAGGAAGTTGTGGGGGAAGAAGAGGAGGTGATGAGGGAGGACATGGATAATTTGATGCAGTTGGATTGCGAAGATGATGGTGGAATTGAGAGGGAAACTGTGGAAGGTGATTCCACAAAGATAATTGAGGCGGTGGAGGATTTACAGTTAGAGGAGGAGTGCACTGGCAATGAGAAAGTGGAAGCTGCTGAAACTGCAGGTGGTGGGGAAACCATGGAACAAGTTGATGAACAGTTGGAGCAATCAGTTGATGTGATTGAAGAAGAAAAAGATGATGTGATTGAGGAAGAAAAAGATGATAAACAGATGGAACAAGAGCAAGTACTGTGTGTTGTTGAAGGAGAAGATCAAAGTGAGGCCATAGAAGCTGTTGGAGTCCCCAGAGATGAAGCGGAAGTTGAAGGTTGTCATGATGGGAAGGATTCACATTTGACTGAGCATGATGGAAAACTTCCAATAGAAGTGAATACTGTGAAGGTGGACATGTCCAAAGATGGAAAGTCACAGATTAAAGAGGGCAGACGATGTGGTTTGTGTGGGGGAGGGACTGATGGTATGCCTCCAAAAATTTTAGCTCAGGATACAGTTGACATTGAGAATGAAGCGTATAGTGGCTCTTCAGCCTCTGAGAAATTTGACTATAACATATGGGATGGTTTTGGTGATGAACCTGGCTGGCTTGGACGTCTCTTGGGTCCAATAAATGATCGTTATGGCATTGCTGGAACATGGGTTCATCAACACTGTGCTGTATGGAGTCCAGAGGTTTACTTTGCGGGTGTAGGATGCTTAAAAAATATAAGGGCCGCTCTGTGCAGAGGGAGAGCGTTAAAATGCACCCGCTGTGGAAGGCCAGGAGCAACTATTGGATGCCGTGTTGATCGGTGTTCAAGAACTTACCACTTGCCTTGTGCACGAGCTATGAATTGCGTATTTGATCATCGCAAGTTTCTTATTGCCTGTACTGGTCATAGGAAACTCTTCCAGCCTCTTGGTTATCAGTACTTGGCCCGCAAAAAGAAATTGAAGGTTAAGAAAATGAAGTTCGAAATCAGAAAGCTATCAAATGATGCTTTGCGAAAGGATATTGAGGCAGAAGAAAAGTGGTTGGAGAATTGTGGCGATGATGAAGAGTTTTTGAAACGTGAAAGCAAGAGGCTACATCGAGATTTGGTGAGAATTGCACCTGTGTACATTGGAGGCTCCGACTCTCAGAGTGGCAAACTGTTTCAGGGTTGGGAATCTGTTGCAGGTCTTCAAAATGTCATTAGATGTATGAAGGAAGTTGTCATATTACCTCTTCTATATCCAGAGTTCTTTGATAGTCTCAGCCTAACACCTCCTAGAGGTGTTCTATTGCATGGGTATCCTGGAACAGGTAAAACTCTTGTTGTGCGGGCATTAATAGGTGCATGTGCACGTGGTGATAGACGAATAGCATATTTTGCTCGTAAAGGTGCTGATTGTTTAGGAAAATATGTTGGTGATGCTGAGCGCCAGCTAAGACTCTTGTTTCAGGTTGCTGAGAGATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGGTTGGCACCTTCCAGAACTAGGCAACAAGATCAGACACATAGTTCAGTTGTGTCAACACTGCTTGCTTTAATGGATGGTTTGAAATCTCGAGGTTCTGTTGTAGTGATAGGTGCTACAAATCGTCCTGATGCTGTTGATCCAGCACTAAGGCGGCCTGGAAGATTTGATAGGGAAATCTATTTTCCACTACCGTCAGAAGAGGACAGAGCTTCCATTCTTTCTGTTCATACTCAAAAATGGCCCAAACCAGTCAGTGGATCCGTGCTTAAGTCGATTGCAAGAGGAACTGCTGGATTTGCTGGTGCAGATCTGCAGGCACTTTGCACTCAAGCAGCCATAATTTCTTTGAAAAGGAATTTCCCTTTGCAAGAAGTTTTGTCTGCTGCTGGAAAGAAAGATTCCGAGTCCAAACGCCTCCCTCTACCTGCCTTTCTAGTGGAGGACAGGGATTGGTTGGAGGCTCTGACATGTTCTCCACCTCCCTGCTCTCGTAGGGAAGTAGGAATAGCTGCTAATGAAGTAATATGCTCTCCTCTTCCAACCCACCTTATCCCATGTCTTCTGCAACCATTATCTACCATGCTCGTATCCCTTTATCTTGATGAACGGCTCTGGTTGCCAACTCCTCTGAGAAGAGCTGCAACAATGATTGAAAGTGTGGTTGTTTCTGCCTTGAATAGGAAAAATATGCTCAGTGATCGCTGGTGGTCCCATATTGATGTTTTACTTCAGGAAGCAGATGTTGCAAAGGACATAGAGAGAAAGCTTTTGCATGCTGGAATCTTACATGGAGATACTGCTCTTGCTGATTCTGATGTTTGCAATGATGATGTTGATGACGGAATTTTGAATTTTGAGCCTTCTGTTAAACATCATGGTGGTACTCGCCCAAGTTTGTTGCAAAACACATTTGTTGCCTCAACGTACAAACCGGGATTTCGGATATTGATTGCTGGAAATCCCAGATCTGGCCAAAGGCATCTTGCTTCCTGCCTTCTTCACTGTTTTGTTGGGAATGTAGAAATCCAGAAGGTTGATTTGGCTACAGTTTTGCTAGAAGGACACGGAGATATGGCGCAAGGGATAACACAAATATTAAAGAAATGTGCCAGCATGGGGTCGTGTATAGTTTTCATGCCAAGAATTGATTTGTGGGCAGTGGAGACACCTAATCAAGTAACAGAAGACAGTGATGCAGATTTATCAAACCATCAATGTCCTGAAAATGAAAAGCATCAACATCCTGAGAATGAAAAGTCATATTTTGCGCGTGGTCTGGAGGAAAGTGTGTCCTTATCACAGCAATGCAAATCAGAAGAAATGTTAGAGTGCCAAGATGATGTTGCTCAGAGTGCTTCACATGCTTGGAACTTGTTTGTGGAGCAGGTGGAGTCTCTAAGTGTCTCTGCATCCTTAATGATTCTGGCTACATCAGAAGTTCCATGTCCAGTGCTTCCAGTTAGAATAAGGCAGTTCTTTAAGAGTGACATTTTAAATGGCCATCGGTCAGTTCCTGTGAAGCATACAGTTCCCAGGTTTTCTGTGCAGGTTGATGGAAATTTCAACCATGATCTGGTGATCAATCTATCTTCAGCAGAGTTATCAAGGGATCTTGTTCAACAGATTGTTCTGTTAGTTCATCAAACTTCTCACATTCATACAACTTCATGCAAGGAGAGAGGCTTTCATGGTATAAATGGTCAGTCCAAGATGGTTGATCACAGTGCAGATCATGGATCAGCTGATGCAAACAACAATTTAACTCTACCTCCTGTTGATTCTCTTCTTAAAGCTTCTGCACCACCTAACAATATAACTGGAAATGGGAAATCAAGCCTTCTGCTAGCAATATCTTCATTTGGCTATCAGATACTGCGATATCCTCATTTTGCTGAACTTTGTTGGTTCACTTCAAAACTTAAAGAAGGTCCTTCTGCAGACATAAGTGGACCTTGGAAGGGTTGGCCATTCAATTCCTGTATAGTTCGTCCTAACAGCTCGCTAGAAATGGTAACTGTGGCAAAGAATATTAAAAGCAAAGAAAACTTGGGCCTAGTTAGAGGCCTGATTGCTGTTGGTTTATCGGCATATAGAGGTCTCTACACATCTCTCAGAGAAGTCTCTTCTGAGGTACGGAAGGTTCTTGAGATTCTAGTTGCGCAGATCAATGCAAAAGTTCAAGCCGGGAAAGATAGATATCAATATGTTCGCCTTTTGTCGCAAGTGGCTTATCTGGAAGATGTGGTCAATAGCTGGGCATACACCTTGCAGAGTTTAGAGCAGGATGCTCCATTGGCAGATGCTAAGCTTACTGCTCCGAGACTTCCAGACGATAACCATATGGATGATCAAGTTCAAAGCGAGGATTCCAAGCCAAAGGTTACAAGCAAATGCTCCAGTGAGCACGAAGTGCTGGAAATTGTCCCTGAAGGGTTTGATGCTGCAAAAGTTGTCAGTATTGACTTGAATGAACAAGTTGCTGATTTGGGTTGTTCTGAGGTTAGACTTGCAAGTTTAGATTGTTCTGGACAGAAGATTGTCCCATCTGATTCTACCCTGGATAATTGTCTTAAAGATTCAGATGAAGTTTTGAATGACCAGAATGGGACAAACCCTAAACCCCACGAGTCAGAAAATGACAAACACCATACAGTTGTTGCAGGAGATTCTCAATCTTTGAAATGTCCAAATGGATTTGAATGCACTGGATCTGTTGCTATTCCCGAGGACAGTCCGACTTCTGATATATTTGGCAGCATTAAGCTCTCTAGTTCTTTGACCAGTTACAACAACCTTAATGGTTTGTCCTTGACAGAGGCTGGTAGTAGACATAATGATGGTAAGGCTGATGCTCATGAGGTTACTGCAGACGTCAACGTTCCAAGCACCACCAGTAAAACCAATCTGCCTGAGTGCATAGATAAGCCTGATGCAAACTTCTCAAGTAAAACCAATGCTGATGTGCATAATGTTGATGTCAACTTCCCTCCCAAAATCAGTCCCTCTACGAAGTCTGAGTTTGTATGCGTATATCATTGTTGCTCTGAATGCCTAGATACCCTTCACAGTTTGACACAGAAAATTCTTATCGAGGAGTGGCGATCAAATGGGAGCCAATGGACAGTGGAGGATGTTCATGATATTGTGGCATCACTGTCTGTGGATCTTCTTTCAGCGGTTAGAAGAATTCATGTTTCCGGAGGTTTCAACAGTTCATTTGGTGATAAAAGGAGACACAGAAATACTGAAACATATGAGTGGCCGGAATCAGGAACATGTGATTGCAATATCTCAGAAAATAAGATTCTTTCACCTGCTGAATGTAGATGCCACACCAGCAGGGAGAGCTTTACTCAAAAGACAAATGCTTCCGCAAATACCCATCTCAGGTTTGATTCAAAATTTGTTTTTCGAGATGGTTTGCTGGTTCATATGCATCCAGATAAAGATGTTTCTTTCCACTGTAAATTCGAGACGCTCTGCCTCTGTTCACTTATAGAGTTGATAGTAATGACCAAGTCACCTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

1882

Amino Acids

207.76

Weight (kDa)

5.67

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	424 - 498	6e-08	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	428 - 506	2e-10	PHD-like zinc-binding domain
AAA	PF00004	633 - 768	1.3e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	794 - 826	5.7e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	734, 3490, 5437
AatII	GACGTC	2 cut(s)	1234, 4989
Acc16I	TGCGCA	1 cut(s)	4275
Acc36I	ACCTGC	6 cut(s)	734, 1787, 2548, 3490, 3652, 5437
AccB1I	GGYRCC	1 cut(s)	2119
AccB7I	CCANNNNNTGG	2 cut(s)	2369, 3688
AccBSI	CCGCTC	2 cut(s)	141, 1355
AccI	GTMKAC	1 cut(s)	4942
AccII	CGCG	1 cut(s)	3385
AccIII	TCCGGA	1 cut(s)	5312
AclI	AACGTT	1 cut(s)	4992
AclWI	GGATC	7 cut(s)	2246, 2367, 2380, 3732, 3859, 4831, 5286
AcoI	YGGCCR	4 cut(s)	3085, 3613, 4079, 5375
AcuI	CTGAAG	5 cut(s)	89, 1149, 2828, 3690, 4563
AcvI	CACGTG	1 cut(s)	1967
AcyI	GRCGYC	2 cut(s)	1231, 4986
AdeI	CACNNNGTG	2 cut(s)	1970, 4525
AfaI	GTAC	7 cut(s)	870, 1510, 1550, 1739, 2998, 3041, 4248
AflII	CTTAAG	1 cut(s)	2381
AflIII	ACRYGT	3 cut(s)	1029, 2582, 5390
AjnI	CCWGG	8 cut(s)	167, 484, 1216, 1399, 1915, 2269, 3647, 4671
AjuI	GAANNNNNNNTTGG	2 cut(s)	3137, 3169
AloI	GAACNNNNNNTCC	2 cut(s)	1263, 1295
Alw21I	GWGCWC	5 cut(s)	167, 710, 1462, 1966, 4521
Alw44I	GTGCAC	3 cut(s)	706, 1458, 1962
AlwI	GGATC	7 cut(s)	2246, 2367, 2380, 3732, 3859, 4831, 5286
AlwNI	CAGNNNCTG	4 cut(s)	1172, 3629, 3988, 4934
Ama87I	CYCGRG	4 cut(s)	134, 205, 2202, 4838
Aor13HI	TCCGGA	1 cut(s)	5312
ApaI	GGGCCC	1 cut(s)	184
ApaLI	GTGCAC	3 cut(s)	706, 1458, 1962
ApeKI	GCWGC	7 cut(s)	731, 2447, 2498, 2624, 2753, 4556, 4869
AseI	ATTAAT	1 cut(s)	1949
Asp700I	GAANNNNTTC	1 cut(s)	1526
AspLEI	GCGC	4 cut(s)	2043, 3193, 3385, 4276
AsuC2I	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3048, 4300
AsuII	TTCGAA	1 cut(s)	1593
AsuNHI	GCTAGC	1 cut(s)	3958
AvaI	CYCGRG	4 cut(s)	134, 205, 2202, 4838
AvaII	GGWCC	5 cut(s)	131, 1241, 2823, 4043, 4064
BaeGI	GKGCMC	5 cut(s)	175, 184, 710, 1462, 1966
BalI	TGGCCA	3 cut(s)	3087, 3615, 4081
BamHI	GGATCC	1 cut(s)	2372
BanI	GGYRCC	1 cut(s)	2119
BanII	GRGCYC	2 cut(s)	167, 184
BauI	CACGAG	2 cut(s)	1461, 4739
BbrPI	CACGTG	1 cut(s)	1967
BbsI	GAAGAC	3 cut(s)	1793, 2666, 3306
Bbv12I	GWGCWC	5 cut(s)	167, 710, 1462, 1966, 4521
BbvI	GCAGC	7 cut(s)	718, 2459, 2485, 2611, 2740, 4543, 4881
BceAI	ACGGC	2 cut(s)	1404, 2738
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	8 cut(s)	169, 486, 1218, 1401, 1917, 2271, 3649, 4673
BciVI	GTATCC	3 cut(s)	1120, 1923, 2713
BclI	TGATCA	4 cut(s)	1483, 3693, 3832, 4462
BcnI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3048, 4300
BfmI	CTRYAG	5 cut(s)	741, 2426, 3159, 4050, 4980
BfoI	RGCGCY	1 cut(s)	2044
BfrI	CTTAAG	1 cut(s)	2381
BfuAI	ACCTGC	6 cut(s)	734, 1787, 2548, 3490, 3652, 5437
BfuI	GTATCC	3 cut(s)	1120, 1923, 2713
BglII	AGATCT	2 cut(s)	2422, 3080
BlpI	GCTNAGC	2 cut(s)	2037, 4419
BmcAI	AGTACT	2 cut(s)	870, 1550
Bme18I	GGWCC	5 cut(s)	131, 1241, 2823, 4043, 4064
BmeT110I	CYCGRG	4 cut(s)	134, 205, 2202, 4838
BmtI	GCTAGC	1 cut(s)	3962
BpiI	GAAGAC	3 cut(s)	1793, 2666, 3306
BplI	GAGNNNNNCTC	2 cut(s)	5452, 5484
BpmI	CTGGAG	3 cut(s)	151, 3413, 4495
Bpu10I	CCTNAGC	1 cut(s)	1122
Bpu1102I	GCTNAGC	2 cut(s)	2037, 4419
Bpu14I	TTCGAA	1 cut(s)	1593
BpuEI	CTTGAG	3 cut(s)	2427, 4280, 5041
BpuMI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3048, 4300
BsaAI	YACGTR	1 cut(s)	1967
BsaBI	GATNNNNATC	1 cut(s)	4311
BsaHI	GRCGYC	2 cut(s)	1231, 4986
BsaI	GGTCTC	2 cut(s)	475, 4217
BsaWI	WCCGGW	1 cut(s)	5312
Bse3DI	GCAATG	4 cut(s)	721, 1263, 2944, 3425
Bse8I	GATNNNNATC	1 cut(s)	4311
BseAI	TCCGGA	1 cut(s)	5312
BseBI	CCWGG	8 cut(s)	169, 486, 1218, 1401, 1917, 2271, 3649, 4673
BseJI	GATNNNNATC	1 cut(s)	4311
BseMI	GCAATG	4 cut(s)	721, 1263, 2944, 3425
BseSI	GKGCMC	5 cut(s)	175, 184, 710, 1462, 1966
BseXI	GCAGC	7 cut(s)	718, 2459, 2485, 2611, 2740, 4543, 4881
BseYI	CCCAGC	1 cut(s)	4368
BsgI	GTGCAG	5 cut(s)	1381, 2439, 3680, 3861, 3897
Bsh1236I	CGCG	1 cut(s)	3385
Bsh1285I	CGRYCG	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	2119
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	5 cut(s)	167, 710, 1462, 1966, 4521
BsiHKCI	CYCGRG	4 cut(s)	134, 205, 2202, 4838
BsiSI	CCGG	8 cut(s)	128, 135, 178, 206, 3047, 4299, 5313, 5378
BslFI	GGGAC	9 cut(s)	117, 187, 908, 1105, 2809, 4523, 4640, 4735, 5100
BsmBI	CGTCTC	2 cut(s)	1238, 5582
BsmFI	GGGAC	9 cut(s)	117, 187, 908, 1105, 2809, 4523, 4640, 4735, 5100
BsmI	GAATGC	3 cut(s)	337, 4820, 5168
Bso31I	GGTCTC	2 cut(s)	475, 4217
BsoBI	CYCGRG	4 cut(s)	134, 205, 2202, 4838
Bsp119I	TTCGAA	1 cut(s)	1593
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	7 cut(s)	167, 175, 184, 710, 1462, 1966, 4521
Bsp13I	TCCGGA	1 cut(s)	5312
Bsp1407I	TGTACA	1 cut(s)	1737
Bsp1720I	GCTNAGC	2 cut(s)	2037, 4419
Bsp19I	CCATGG	1 cut(s)	759
BspEI	TCCGGA	1 cut(s)	5312
BspFNI	CGCG	1 cut(s)	3385
BspHI	TCATGA	3 cut(s)	955, 4969, 5251
BspMAI	CTGCAG	4 cut(s)	745, 2430, 4054, 4984
BspMI	ACCTGC	6 cut(s)	734, 1787, 2548, 3490, 3652, 5437
BspOI	GCTAGC	1 cut(s)	3962
BspPI	GGATC	7 cut(s)	2246, 2367, 2380, 3732, 3859, 4831, 5286
BspQI	GCTCTTC	2 cut(s)	1168, 2743
BspT104I	TTCGAA	1 cut(s)	1593
BspT107I	GGYRCC	1 cut(s)	2119
BspTI	CTTAAG	1 cut(s)	2381
BspTNI	GGTCTC	2 cut(s)	475, 4217
BsrBI	CCGCTC	2 cut(s)	141, 1355
BsrDI	GCAATG	4 cut(s)	721, 1263, 2944, 3425
BsrGI	TGTACA	1 cut(s)	1737
BssNI	GRCGYC	2 cut(s)	1231, 4986
BssSI	CACGAG	2 cut(s)	1461, 4739
BssT1I	CCWWGG	2 cut(s)	759, 4067
Bst2BI	CACGAG	2 cut(s)	1461, 4739
Bst2UI	CCWGG	8 cut(s)	169, 486, 1218, 1401, 1917, 2271, 3649, 4673
BstACI	GRCGYC	2 cut(s)	1231, 4986
BstAFI	CTTAAG	1 cut(s)	2381
BstAPI	GCANNNNNTGC	3 cut(s)	1991, 2858, 4525
BstAUI	TGTACA	1 cut(s)	1737
BstBAI	YACGTR	1 cut(s)	1967
BstBI	TTCGAA	1 cut(s)	1593
BstDSI	CCRYGG	1 cut(s)	759
BstENI	CCTNNNNNAGG	3 cut(s)	1890, 1920, 2791
BstFNI	CGCG	1 cut(s)	3385
BstH2I	RGCGCY	1 cut(s)	2044
BstHHI	GCGC	4 cut(s)	2043, 3193, 3385, 4276
BstMCI	CGRYCG	1 cut(s)	8
BstNI	CCWGG	8 cut(s)	169, 486, 1218, 1401, 1917, 2271, 3649, 4673
BstNSI	RCATGY	6 cut(s)	1033, 1962, 2586, 2891, 3479, 5394
BstSFI	CTRYAG	5 cut(s)	741, 2426, 3159, 4050, 4980
BstSLI	GKGCMC	5 cut(s)	175, 184, 710, 1462, 1966
BstUI	CGCG	1 cut(s)	3385
BstV1I	GCAGC	7 cut(s)	718, 2459, 2485, 2611, 2740, 4543, 4881
BstV2I	GAAGAC	3 cut(s)	1793, 2666, 3306
BstX2I	RGATCY	6 cut(s)	2372, 2422, 3080, 3724, 4823, 5278
BstXI	CCANNNNNNTGG	1 cut(s)	1538
BstYI	RGATCY	6 cut(s)	2372, 2422, 3080, 3724, 4823, 5278
BsuI	GTATCC	3 cut(s)	1120, 1923, 2713
BtgI	CCRYGG	1 cut(s)	759
BtgZI	GCGATG	2 cut(s)	1472, 1683
BtsI	GCAGTG	2 cut(s)	2171, 3279
BveI	ACCTGC	6 cut(s)	734, 1787, 2548, 3490, 3652, 5437
CaiI	CAGNNNCTG	4 cut(s)	1172, 3629, 3988, 4934
CciI	TCATGA	3 cut(s)	955, 4969, 5251
CfoI	GCGC	4 cut(s)	2043, 3193, 3385, 4276
Cfr9I	CCCGGG	2 cut(s)	134, 205
CseI	GACGC	1 cut(s)	5599
Csp6I	GTAC	7 cut(s)	869, 1509, 1549, 1738, 2997, 3040, 4247
CspCI	CAANNNNNGTGG	2 cut(s)	1436, 1471
CviQI	GTAC	7 cut(s)	869, 1509, 1549, 1738, 2997, 3040, 4247
DraI	TTTAAA	1 cut(s)	3609
DraIII	CACNNNGTG	2 cut(s)	1970, 4525
EaeI	YGGCCR	4 cut(s)	3085, 3613, 4079, 5375
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	759, 4067
Eco147I	AGGCCT	1 cut(s)	4179
Eco24I	GRGCYC	2 cut(s)	167, 184
Eco31I	GGTCTC	2 cut(s)	475, 4217
Eco32I	GATATC	2 cut(s)	3995, 4313
Eco47I	GGWCC	5 cut(s)	131, 1241, 2823, 4043, 4064
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	5 cut(s)	89, 1149, 2828, 3690, 4563
Eco72I	CACGTG	1 cut(s)	1967
Eco88I	CYCGRG	4 cut(s)	134, 205, 2202, 4838
EcoICRI	GAGCTC	1 cut(s)	165
EcoNI	CCTNNNNNAGG	3 cut(s)	1890, 1920, 2791
EcoO109I	RGGNCCY	3 cut(s)	131, 181, 4043
EcoRI	GAATTC	1 cut(s)	5301
EcoRII	CCWGG	8 cut(s)	167, 484, 1216, 1399, 1915, 2269, 3647, 4671
EcoRV	GATATC	2 cut(s)	3995, 4313
EcoT14I	CCWWGG	2 cut(s)	759, 4067
EcoT22I	ATGCAT	1 cut(s)	5553
EcoT38I	GRGCYC	2 cut(s)	167, 184
ErhI	CCWWGG	2 cut(s)	759, 4067
Esp3I	CGTCTC	2 cut(s)	1238, 5582
FalI	AAGNNNNNCTT	2 cut(s)	4051, 4083
FaqI	GGGAC	9 cut(s)	117, 187, 908, 1105, 2809, 4523, 4640, 4735, 5100
FauI	CCCGC	5 cut(s)	115, 1315, 1394, 1565, 1935
FauNDI	CATATG	4 cut(s)	1193, 4455, 5368, 5547
FbaI	TGATCA	4 cut(s)	1483, 3693, 3832, 4462
FblI	GTMKAC	1 cut(s)	4942
FriOI	GRGCYC	2 cut(s)	167, 184
FspI	TGCGCA	1 cut(s)	4275
GlaI	GCGC	4 cut(s)	2042, 3192, 3384, 4275
GsaI	CCCAGC	1 cut(s)	4372
GsuI	CTGGAG	3 cut(s)	151, 3413, 4495
HaeII	RGCGCY	1 cut(s)	2044
HapII	CCGG	8 cut(s)	128, 135, 178, 206, 3047, 4299, 5313, 5378
HgaI	GACGC	1 cut(s)	5599
HhaI	GCGC	4 cut(s)	2043, 3193, 3385, 4276
Hin1I	GRCGYC	2 cut(s)	1231, 4986
Hin6I	GCGC	4 cut(s)	2041, 3191, 3383, 4274
HinP1I	GCGC	4 cut(s)	2041, 3191, 3383, 4274
HincII	GTYRAC	5 cut(s)	1135, 2081, 2169, 4990, 5095
HindII	GTYRAC	5 cut(s)	1135, 2081, 2169, 4990, 5095
HindIII	AAGCTT	3 cut(s)	2879, 3906, 4421
HpaII	CCGG	8 cut(s)	128, 135, 178, 206, 3047, 4299, 5313, 5378
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4IV	ACGT	6 cut(s)	1231, 1690, 1966, 3038, 4986, 4992
HpySE526I	ACGT	6 cut(s)	1231, 1690, 1966, 3038, 4986, 4992
Hsp92I	GRCGYC	2 cut(s)	1231, 4986
HspAI	GCGC	4 cut(s)	2041, 3191, 3383, 4274
KflI	GGGWCCC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	5312
Ksp22I	TGATCA	4 cut(s)	1483, 3693, 3832, 4462
LguI	GCTCTTC	2 cut(s)	1168, 2743
Lsp1109I	GCAGC	7 cut(s)	718, 2459, 2485, 2611, 2740, 4543, 4881
MaeII	ACGT	6 cut(s)	1231, 1690, 1966, 3038, 4986, 4992
MaeIII	GTNAC	8 cut(s)	1047, 3292, 3599, 4126, 4495, 4898, 4975, 5634
MbiI	CCGCTC	2 cut(s)	141, 1355
MflI	RGATCY	6 cut(s)	2372, 2422, 3080, 3724, 4823, 5278
MhlI	GDGCHC	7 cut(s)	167, 175, 184, 710, 1462, 1966, 4521
MlsI	TGGCCA	3 cut(s)	3087, 3615, 4081
MluNI	TGGCCA	3 cut(s)	3087, 3615, 4081
MlyI	GAGTC	7 cut(s)	930, 1312, 1748, 2046, 2528, 3515, 4751
MmeI	TCCRAC	9 cut(s)	426, 588, 762, 898, 1635, 1776, 2550, 2678, 4874
Mox20I	TGGCCA	3 cut(s)	3087, 3615, 4081
Mph1103I	ATGCAT	1 cut(s)	5553
MroI	TCCGGA	1 cut(s)	5312
MroXI	GAANNNNTTC	1 cut(s)	1526
MscI	TGGCCA	3 cut(s)	3087, 3615, 4081
MslI	CAYNNNNRTG	6 cut(s)	2832, 2991, 3418, 4458, 4950, 5371
Msp20I	TGGCCA	3 cut(s)	3087, 3615, 4081
MspA1I	CMGCKG	3 cut(s)	1389, 3857, 5291
MspCI	CTTAAG	1 cut(s)	2381
MspI	CCGG	8 cut(s)	128, 135, 178, 206, 3047, 4299, 5313, 5378
Mva1269I	GAATGC	3 cut(s)	337, 4820, 5168
MvaI	CCWGG	8 cut(s)	169, 486, 1218, 1401, 1917, 2271, 3649, 4673
MvnI	CGCG	1 cut(s)	3385
NciI	CCSGG	8 cut(s)	129, 135, 136, 179, 206, 207, 3048, 4300
NcoI	CCATGG	1 cut(s)	759
NdeI	CATATG	4 cut(s)	1193, 4455, 5368, 5547
NheI	GCTAGC	1 cut(s)	3958
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	1047, 3599, 5634
NsbI	TGCGCA	1 cut(s)	4275
NsiI	ATGCAT	1 cut(s)	5553
NspI	RCATGY	6 cut(s)	1033, 1962, 2586, 2891, 3479, 5394
NspV	TTCGAA	1 cut(s)	1593
PaeI	GCATGC	1 cut(s)	2891
PaeR7I	CTCGAG	1 cut(s)	2202
PagI	TCATGA	3 cut(s)	955, 4969, 5251
PaqCI	CACCTGC	3 cut(s)	734, 3490, 5437
PceI	AGGCCT	1 cut(s)	4179
PciI	ACATGT	3 cut(s)	1029, 2582, 5390
PciSI	GCTCTTC	2 cut(s)	1168, 2743
PctI	GAATGC	3 cut(s)	337, 4820, 5168
PdmI	GAANNNNTTC	1 cut(s)	1526
PflFI	GACNNNGTC	1 cut(s)	5632
PflMI	CCANNNNNTGG	2 cut(s)	2369, 3688
PfoI	TCCNGGA	1 cut(s)	1915
Ple19I	CGATCG	1 cut(s)	8
PleI	GAGTC	7 cut(s)	929, 1311, 1748, 2046, 2527, 3514, 4750
PmaCI	CACGTG	1 cut(s)	1967
PmlI	CACGTG	1 cut(s)	1967
PpsI	GAGTC	7 cut(s)	929, 1311, 1748, 2046, 2527, 3514, 4750
Ppu21I	YACGTR	1 cut(s)	1967
PpuMI	RGGWCCY	2 cut(s)	131, 4043
PscI	ACATGT	3 cut(s)	1029, 2582, 5390
PshBI	ATTAAT	1 cut(s)	1949
Psp124BI	GAGCTC	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	4992
Psp5II	RGGWCCY	2 cut(s)	131, 4043
Psp6I	CCWGG	8 cut(s)	167, 484, 1216, 1399, 1915, 2269, 3647, 4671
PspCI	CACGTG	1 cut(s)	1967
PspFI	CCCAGC	1 cut(s)	4368
PspGI	CCWGG	8 cut(s)	167, 484, 1216, 1399, 1915, 2269, 3647, 4671
PspOMI	GGGCCC	1 cut(s)	180
PspPPI	RGGWCCY	2 cut(s)	131, 4043
PsrI	GAACNNNNNNTAC	2 cut(s)	4239, 4271
PstI	CTGCAG	4 cut(s)	745, 2430, 4054, 4984
PstNI	CAGNNNCTG	4 cut(s)	1172, 3629, 3988, 4934
PsuI	RGATCY	6 cut(s)	2372, 2422, 3080, 3724, 4823, 5278
PsyI	GACNNNGTC	1 cut(s)	5632
PvuI	CGATCG	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	3857
RsaI	GTAC	7 cut(s)	870, 1510, 1550, 1739, 2998, 3041, 4248
RsaNI	GTAC	7 cut(s)	869, 1509, 1549, 1738, 2997, 3040, 4247
RseI	CAYNNNNRTG	6 cut(s)	2832, 2991, 3418, 4458, 4950, 5371
SacI	GAGCTC	1 cut(s)	167
SapI	GCTCTTC	2 cut(s)	1168, 2743
ScaI	AGTACT	2 cut(s)	870, 1550
SchI	GAGTC	7 cut(s)	930, 1312, 1748, 2046, 2528, 3515, 4751
SduI	GDGCHC	7 cut(s)	167, 175, 184, 710, 1462, 1966, 4521
SfcI	CTRYAG	5 cut(s)	741, 2426, 3159, 4050, 4980
Sfr274I	CTCGAG	1 cut(s)	2202
SfuI	TTCGAA	1 cut(s)	1593
SinI	GGWCC	5 cut(s)	131, 1241, 2823, 4043, 4064
SlaI	CTCGAG	1 cut(s)	2202
SmaI	CCCGGG	2 cut(s)	136, 207
SmiMI	CAYNNNNRTG	6 cut(s)	2832, 2991, 3418, 4458, 4950, 5371
SmlI	CTYRAG	5 cut(s)	2202, 2381, 2442, 4259, 5056
SmoI	CTYRAG	5 cut(s)	2202, 2381, 2442, 4259, 5056
SphI	GCATGC	1 cut(s)	2891
SseBI	AGGCCT	1 cut(s)	4179
SspI	AATATT	3 cut(s)	2094, 3210, 4144
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	4179
StyI	CCWWGG	2 cut(s)	759, 4067
TaiI	ACGT	6 cut(s)	1234, 1693, 1969, 3041, 4989, 4995
TaqII	GACCGA	1 cut(s)	3609
TatI	WGTACW	4 cut(s)	868, 1508, 1548, 1737
TauI	GCSGC	3 cut(s)	214, 1355, 2269
TseFI	GTSAC	3 cut(s)	1047, 3599, 5634
TseI	GCWGC	7 cut(s)	731, 2447, 2498, 2624, 2753, 4556, 4869
Tsp45I	GTSAC	3 cut(s)	1047, 3599, 5634
TspGWI	ACGGA	4 cut(s)	2365, 2970, 3195, 4264
TspMI	CCCGGG	2 cut(s)	134, 205
Tth111I	GACNNNGTC	1 cut(s)	5632
Van91I	CCANNNNNTGG	2 cut(s)	2369, 3688
Vha464I	CTTAAG	1 cut(s)	2381
VneI	GTGCAC	3 cut(s)	706, 1458, 1962
VpaK11BI	GGWCC	5 cut(s)	131, 1241, 2823, 4043, 4064
VspI	ATTAAT	1 cut(s)	1949
XagI	CCTNNNNNAGG	3 cut(s)	1890, 1920, 2791
XceI	RCATGY	6 cut(s)	1033, 1962, 2586, 2891, 3479, 5394
XhoI	CTCGAG	1 cut(s)	2202
XmaI	CCCGGG	2 cut(s)	134, 205
XmiI	GTMKAC	1 cut(s)	4942
XmnI	GAANNNNTTC	1 cut(s)	1526
ZraI	GACGTC	2 cut(s)	1232, 4987
ZrmI	AGTACT	2 cut(s)	870, 1550
Zsp2I	ATGCAT	1 cut(s)	5553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.