Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438997.1

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Reverse (-)

350 .. 1543

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggatgatcaagttcaaagcgaggattccaagccaaaggttacaagcaaatgctccagtgagcacgaagtgctggaaattgtccctgaagggtttgatgctgcaaaagttgtcagtattgacttgaatgaacaagttgctgatttgggttgttctgaggttagacttgcaagtttagattgttctggacagaagattgtcccatctgattctaccctggataattgtcttaaagattcagatgaagttttgaatgaccagaatgggacaaaccctaaaccccacgagtcagaaaatgacaaacaccatacagttgttgcaggagattctgaatctttgaaatgtccaaatggatttgaatgcactgaatctgttgctattcccgaggacagtccaacttctgatatatttggcagcattaagctctctagttctttgaccagttacaacaaccttaatggtttgtccttgacagaggctggtagtagacataatgatggtaaggctgatgctcatgaggttactgcagacgtcaacgttccaagcaccaccagtaaaaccaatctgcctgagtgcatagataagcctgatgcaaacttctcaagtaaaaccaatgctgatgtgcataatgttgatgtcaacttccctcccaaaatcagtccctctacgaagtctgagtttgtatgcgtatatcattgttgctctgaatgcctagatacccttcacagtttgacacagaaaattcttatcgaggagtggcgatcaaatgggagccaatggacagtggaggatgttcatgatattgtggcatcactatctgtggatcttctttcagcggttagaagaattcatgtttccggaggtttcaacagttcatttggtgataaaaggagacacagaaatactgaaacatatgagtggccggaatcaggaacatgtgattgcaatatctcagaaaataagattctttcacctgctgaatgtagatgccacaccagcagggagagctttactcaaaagacaaatgcttccgcaaatactcatctcaggtttgattcaaaatttgtttttcgagatggtttgctggttcatatgcatccagataaagatgtttctttccactgtaaattcgagacgctctgcctctgttcacttatagagttgatagtaatgaccaagtcaccttttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

397

Amino Acids

43.68

Weight (kDa)

4.97

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	982
AatII	GACGTC	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	982
AccI	GTMKAC	1 cut(s)	487
AccIII	TCCGGA	1 cut(s)	857
AciI	CCGC	2 cut(s)	836, 1032
AclI	AACGTT	1 cut(s)	537
AclWI	GGATC	1 cut(s)	831
AcoI	YGGCCR	1 cut(s)	920
AcsI	RAATTY	4 cut(s)	741, 846, 1061, 1127
AcuI	CTGAAG	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	531
AdeI	CACNNNGTG	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	929
AflIII	ACRYGT	1 cut(s)	935
AgsI	TTSAA	7 cut(s)	17, 127, 253, 340, 359, 868, 1059
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	2 cut(s)	424, 1008
AluI	AGCT	2 cut(s)	424, 1008
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	886, 1127
AlwI	GGATC	1 cut(s)	831
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	857
AoxI	GGCC	1 cut(s)	920
ApeKI	GCWGC	2 cut(s)	101, 414
ApoI	RAATTY	4 cut(s)	741, 846, 1061, 1127
AsuHPI	GGTGA	3 cut(s)	893, 963, 1173
AvaI	CYCGRG	1 cut(s)	383
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	88, 426
BccI	CCATC	3 cut(s)	211, 491, 1070
BciT130I	CCWGG	1 cut(s)	218
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	886, 1127
BfaI	CTAG	2 cut(s)	429, 713
BfmI	CTRYAG	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	982
BisI	GCNGC	2 cut(s)	102, 415
BlsI	GCNGC	2 cut(s)	103, 416
Bme1390I	CCNGG	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	773
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	6 cut(s)	88, 499, 580, 818, 977, 1105
BplI	GAGNNNNNCTC	2 cut(s)	997, 1029
BpmI	CTGGAG	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	216, 384
BsaWI	WCCGGW	1 cut(s)	857
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	3 cut(s)	57, 441, 552
BseAI	TCCGGA	1 cut(s)	857
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	216, 384
BseGI	GGATG	3 cut(s)	10, 796, 1096
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMII	CTCAG	5 cut(s)	147, 561, 666, 966, 1060
BseNI	ACTGG	3 cut(s)	57, 441, 552
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	2 cut(s)	88, 426
BshFI	GGCC	1 cut(s)	922
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	858, 923
BslFI	GGGAC	4 cut(s)	68, 185, 280, 645
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	2 cut(s)	886, 1127
BsmBI	CGTCTC	1 cut(s)	1127
BsmFI	GGGAC	4 cut(s)	68, 185, 280, 645
BsmI	GAATGC	2 cut(s)	365, 713
BsnI	GGCC	1 cut(s)	922
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	857
Bsp143I	GATC	3 cut(s)	7, 761, 823
BspACI	CCGC	2 cut(s)	836, 1032
BspANI	GGCC	1 cut(s)	922
BspCNI	CTCAG	5 cut(s)	148, 562, 667, 965, 1059
BspEI	TCCGGA	1 cut(s)	857
BspHI	TCATGA	2 cut(s)	514, 796
BspLI	GGNNCC	1 cut(s)	773
BspMAI	CTGCAG	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	982
BspPI	GGATC	1 cut(s)	831
BsrI	ACTGG	3 cut(s)	57, 441, 552
BssECI	CCNNGG	2 cut(s)	216, 384
BssMI	GATC	3 cut(s)	7, 761, 823
BssNI	GRCGYC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	6 cut(s)	313, 392, 728, 784, 872, 1124
BstACI	GRCGYC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstDEI	CTNAG	5 cut(s)	156, 570, 675, 952, 1046
BstF5I	GGATG	3 cut(s)	10, 796, 1096
BstKTI	GATC	3 cut(s)	10, 764, 826
BstMAI	GTCTC	2 cut(s)	886, 1127
BstMBI	GATC	3 cut(s)	7, 761, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 708, 996, 1005
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	939
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	2 cut(s)	88, 426
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	922
BtsCI	GGATG	3 cut(s)	10, 796, 1096
BtsIMutI	CAGTG	4 cut(s)	64, 363, 789, 1120
BveI	ACCTGC	1 cut(s)	982
CaiI	CAGNNNCTG	1 cut(s)	479
CciI	TCATGA	2 cut(s)	514, 796
CseI	GACGC	1 cut(s)	1144
CviAII	CATG	4 cut(s)	515, 797, 851, 936
CviJI	RGCY	8 cut(s)	34, 424, 479, 506, 586, 774, 922, 1008
CviKI_1	RGCY	8 cut(s)	34, 424, 479, 506, 586, 774, 922, 1008
DdeI	CTNAG	5 cut(s)	156, 570, 675, 952, 1046
DpnI	GATC	3 cut(s)	9, 763, 825
DpnII	GATC	3 cut(s)	7, 761, 823
DraIII	CACNNNGTG	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	920
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	1098
Esp3I	CGTCTC	1 cut(s)	1127
FaeI	CATG	4 cut(s)	518, 800, 854, 939
FaqI	GGGAC	4 cut(s)	68, 185, 280, 645
FatI	CATG	4 cut(s)	514, 796, 850, 935
FauNDI	CATATG	2 cut(s)	913, 1092
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	102, 415
FokI	GGATG	3 cut(s)	17, 803, 1083
Fsp4HI	GCNGC	2 cut(s)	102, 415
FspBI	CTAG	2 cut(s)	429, 713
GluI	GCNGC	2 cut(s)	102, 415
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	922
HapII	CCGG	2 cut(s)	858, 923
HgaI	GACGC	1 cut(s)	1144
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	4 cut(s)	518, 800, 854, 939
HincII	GTYRAC	2 cut(s)	535, 640
HindII	GTYRAC	2 cut(s)	535, 640
HpaII	CCGG	2 cut(s)	858, 923
HphI	GGTGA	3 cut(s)	893, 963, 1173
Hpy166II	GTNNAC	4 cut(s)	488, 535, 640, 1151
Hpy188I	TCNGA	9 cut(s)	157, 208, 241, 292, 331, 403, 676, 706, 955
Hpy188III	TCNNGA	9 cut(s)	186, 383, 515, 797, 858, 930, 1073, 1100, 1132
Hpy8I	GTNNAC	4 cut(s)	488, 535, 640, 1151
HpyAV	CCTTC	2 cut(s)	83, 731
HpyCH4III	ACNGT	6 cut(s)	313, 392, 728, 784, 872, 1124
HpyCH4IV	ACGT	2 cut(s)	531, 537
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 708, 996, 1005
HpyF3I	CTNAG	5 cut(s)	156, 570, 675, 952, 1046
HpySE526I	ACGT	2 cut(s)	531, 537
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	4 cut(s)	518, 800, 854, 939
Kpn2I	TCCGGA	1 cut(s)	857
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 761, 823
LmnI	GCTCC	2 cut(s)	59, 771
Lsp1109I	GCAGC	2 cut(s)	88, 426
LweI	GCATC	6 cut(s)	88, 499, 580, 818, 977, 1105
MaeI	CTAG	2 cut(s)	429, 713
MaeII	ACGT	2 cut(s)	531, 537
MaeIII	GTNAC	4 cut(s)	40, 443, 520, 1179
MalI	GATC	3 cut(s)	9, 763, 825
MboI	GATC	3 cut(s)	7, 761, 823
MboII	GAAGA	3 cut(s)	205, 818, 855
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	6 cut(s)	78, 223, 741, 846, 1061, 1127
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	419
Mph1103I	ATGCAT	1 cut(s)	1098
MroI	TCCGGA	1 cut(s)	857
MseI	TTAA	3 cut(s)	231, 420, 456
MslI	CAYNNNNRTG	2 cut(s)	495, 916
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	2 cut(s)	858, 923
MspR9I	CCNGG	1 cut(s)	218
Mva1269I	GAATGC	2 cut(s)	365, 713
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	70, 708, 996, 1005
NdeI	CATATG	2 cut(s)	913, 1092
NdeII	GATC	3 cut(s)	7, 761, 823
NlaIII	CATG	4 cut(s)	518, 800, 854, 939
NlaIV	GGNNCC	1 cut(s)	773
NmuCI	GTSAC	1 cut(s)	1179
NsiI	ATGCAT	1 cut(s)	1098
NspI	RCATGY	1 cut(s)	939
PagI	TCATGA	2 cut(s)	514, 796
PaqCI	CACCTGC	1 cut(s)	982
PciI	ACATGT	1 cut(s)	935
PctI	GAATGC	2 cut(s)	365, 713
PfeI	GAWTC	9 cut(s)	26, 209, 236, 326, 332, 368, 926, 964, 1055
PflFI	GACNNNGTC	1 cut(s)	1177
PkrI	GCNGC	2 cut(s)	103, 416
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	1 cut(s)	935
Psp1406I	AACGTT	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	773
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	823
PsyI	GACNNNGTC	1 cut(s)	1177
RseI	CAYNNNNRTG	2 cut(s)	495, 916
SaqAI	TTAA	3 cut(s)	231, 420, 456
SatI	GCNGC	2 cut(s)	102, 415
Sau3AI	GATC	3 cut(s)	7, 761, 823
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	6 cut(s)	88, 499, 580, 818, 977, 1105
SfcI	CTRYAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	2 cut(s)	495, 916
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
Sse9I	AATT	6 cut(s)	78, 223, 741, 846, 1061, 1127
SsiI	CCGC	2 cut(s)	836, 1032
SspMI	CTAG	2 cut(s)	429, 713
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	6 cut(s)	313, 392, 728, 784, 872, 1124
TaiI	ACGT	2 cut(s)	534, 540
TaqI	TCGA	3 cut(s)	750, 1072, 1131
TasI	AATT	6 cut(s)	78, 223, 741, 846, 1061, 1127
TfiI	GAWTC	9 cut(s)	26, 209, 236, 326, 332, 368, 926, 964, 1055
Tru1I	TTAA	3 cut(s)	231, 420, 456
Tru9I	TTAA	3 cut(s)	231, 420, 456
TscAI	CASTG	4 cut(s)	64, 370, 789, 1127
TseFI	GTSAC	1 cut(s)	1179
TseI	GCWGC	2 cut(s)	101, 414
Tsp45I	GTSAC	1 cut(s)	1179
TspDTI	ATGAA	7 cut(s)	144, 258, 785, 839, 864, 1079, 1178
TspRI	CASTG	4 cut(s)	64, 370, 789, 1127
Tth111I	GACNNNGTC	1 cut(s)	1177
XapI	RAATTY	4 cut(s)	741, 846, 1061, 1127
XceI	RCATGY	1 cut(s)	939
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	2 cut(s)	429, 713
ZraI	GACGTC	1 cut(s)	532
Zsp2I	ATGCAT	1 cut(s)	1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.