Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Reverse (-)

25952879 .. 25962802

Gene Structure 9924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5658 bp

ATGCGATCATCGCCGAGTGGTGGTAAACAGTGGGGGCAGAGGAATCGGAAGAAGCACAAGAGGCTTGATGCTATTAGTGAAACCGTGTATAAGAGGAATCATCTTCAGGCTAATGATGGGGCGGGGCCGGGTCCCGGGAGCGGTGAATCGGAGCTTCGGAGGAGCTCCAGGGCACGCCGGGCCCCCGTTGTGCTTGATTTGTCCCCGGGGCCGCCGAAGAAGAGGAGGAGGCTTGGTAAGAATGGGAGATTGAGTGGGGGGAAGAATGTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGTGGAGGGAGGGTGGAAGTCGAGGTTGAGATCGAGGAGGGGGCATTCGGGGTTTGTGAAGGGGAAGAGGAAGCTATTTGAAGATGTGAGTGGAGGTAGTAGTGGAGGGAAGGTAGTGGGGAGTGAGCTGGATGATGAGAATGAGGAAGGGTTGGAAGGTGGGAGGCCGAAGGTTGTGAAGTCGAAGAGACCAGGGAGGGTTAGAGCAACGCATGGTTCGGAACATGAAGAGAATGAGTTGCTTGAAGTTAAGGAGGAAGTTGTGGGGGAAGAAGAGGAGGTGATGAGGGAGGACATGGATAATTTAATGCAGTTGGATTGCGAAGATGATGGTGGAATTGAGAGGGAAACTGTGGAAGGTGATTCCACAAAGATAATTGAGGCGGTGGAGGATTTACAGTTAGAGGAGGAGTGCACTGGCAATGAGAAAGTGGAAGCTGCTGAAACTGCAGGTGGTGGGGAAACCATGGAACAAGTTGATGAACAGTTGGAGCAATCAGTTGATGTGATTGAAGAAGAAAAAGATGATGTGATTGAAGAAGAAAAAGATGATAAACAGATGGAACAAGAGCAAGTACCGTGTGTTGCTGAAGGAGAAGATCAAAGTGAGGCCATAGAAGCTGTTGGAGTCCCCAGAGATGAAGCGGAAGTTGAAGGTTGTCATGATGGGAAGGATTCACATTTGACTGAGCATGATGGCAAACTTCCAATAGAAGTGAATACTGTGAAGGTGGACATGTCCAAAGATGGAAAGTCACAGATTAAAGAGGGCAGACGATGTGGTTTGTGTGGGGGAGGGACTGATGGTATGCCTCCAAAAATATTAGCTCAGGATACGGTTGACGTTGAGAATGAAGCGTATAGTGGCTCTTCAGCCTCTGAGAAATTTGACTATAACATATGGGATGGTTTTGGTGATGAACCTGGCTGGCTTGGACGTCTCTTGGGTCCAATAAATGATCGTTATGGCATTGCTGGAACATGGGTTCATCAACACTGTGCTGTATGGAGTCCAGAGGTTTACTTTGCGGGTGTAGGATGCTTAAAAAATATAAGGGCCGCTCTGTGCAGAGGGAGAGCGTTAAAATGCACCCGCTGTGGAAGGCCAGGAGCAACTATTGGATGCCGTGTTGATCGGTGTTCAAGAACTTACCACTTGCCTTGTGCACGAGCTATGAATTGCGTATTTGATCATCGCAAGTTTCTTATTGCCTGTACTGGTCATAGGAAACTCTTCCAGCCTCTTGGTTATCAGTACTTGGCCCGCAAAAAGAAATTGAAGGTTAAGAAAATGAAGTTCGAAATCAGAAAGCTATCAAATGATGCTTTGCGAAAGGATATTGAGGCAGAAGAAAAGTGGTTGGAGAATTGTGGCGATGATGAAGAGTTTTTGAAACGTGAAAGCAAGAGGCTACATCGAGATTTGGTGAGAATTGCACCTGTGTACATTGGAGGCTCCGACTCTGAGAGTGGCAAACTGTTTCAGGGTTGGGAATCTGTTGCAGGTCTTCAAAATGTCATTAGATGCATGAAGGAAGTTGTCATATTACCTCTTCTATATCCAGAGTTCTTTGATAGTCTCAGCCTAACACCTCCTAGAGGTGTTCTATTGCATGGGTATCCTGGAACAGGTAAAACTCTTGTTGTGCGGGCATTAATAGGTGCATGTGCACGTGGTGATAGACGAATAGCATATTTTGCTCGTAAAGGTGCTGATTGTTTAGGAAAATATGTTGGTGATGCTGAGCGCCAGCTAAGACTCTTGTTTCAGGTTGCTGAGAGATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGGTTGGCACCCTCCAGAACTAGGCAACAAGATCAGACACATAGTTCAGTTGTGTCAACACTGCTCGCTTTAATGGATGGTTTGAAATCTCGAGGTTCTGTTGTAGTGATAGGTGCTACAAATCGTCCTGATGCTGTTGATCCAGCACTAAGGCGGCCTGGAAGATTTGATAGGGAAATCTATTTTCCACTACCGTCAGAAGAGGACAGAGCTTCCATTCTTTCTGTTCATACTCAAAAATGGCCCAAACCAGTCAGTGGATCCGTGCTTAAGTCGATTGCAAGAGGAACTGCTGGATTTGCTGGTGCAGATCTGCAGGCACTTTGCACTCAAGCAGCCATAATTTCTTTGAAAAGGAATTTCCCTTTGCAAGAAGTTTTGTCTGCTGCTGGAAAGAAAGATTCCGAGTCCAAACGCCTCCCTCTACCTGCCTTTGTAGTGGAGGACAGGGATTGGTTGGAGGCTTTGACATGTTCTCCACCTCCCTGCTCTCGTAGGGAAGTAGGAATAGCTGCTAATGAAGTAATATGCTCTCCTCTTCCAACCCACCTTATCCCATGTCTTCTACAACCATTATCTACCATGCTCGTATCCCTTTATCTTGATGAACGGCTCTGGTTGCCAACTCCTCTGAGAAGAGCTGCAACAATGATTGAAAGTGTGGTTGTTTCTGCCTTGAATAGGAAAAATATGCTCAGTGATCGCTGGTGGTCCCATATTGATGTTTTACTTCAGGAAGCAGATGTTGCAAAGGACATAGAGAGAAAGCTTTTGCATGCTGGAATCTTACATGGAGATACTGCTCTTGCTGATTCTGATGTTTGCAATGATGATGTTGACGACGGAATTTTGAATTTTGAGCCTTCTGTTAAACATCATGGTGGTACTCGCCCAAGTTTGTTGCAAAACACATTAGTTGCCTCAACGTACAAACCAGGATTTCGGATATTGATTGCTGGAAATCCCAGATCTGGCCAAAGGCATCTTGCTTCCTGCCTTCTTCACTGTTTTGTTGGGAATGTAGAAATCCAGAAGGTTGATTTGGCTACAGTTTTGCTAGAAGGACACGGAGATATGGCGCAAGGGATAACACAAATATTAAAGAAATGTGCCAGCATGGGGTCGTGTATAGTTTTCATGCCAAGAATTGATTTGTGGGCGGTGGAGACACCTAATCAGGTAACAGAAGACAGTGATGCAGATTTATCAAACCATCAATGTCCTGAAAATGAAAAGCATCAACATCCTGAAAATGAAAAGTCATATTTTGCGCGTGGTCTGGAGGAAAGTGTTTCCTTATCACAGCAATGCAAATCAGAAGAAATGTTGTGCCAAGATGATGTTGCTCAGAGTGCTTCACATGCTTGGAACTTGTTTGTGGAGCAGGTGGAGTCTCTAAGTGTCTCTGCATCCTTAATGATTCTGGCTACATCAGAAGTTCCATGTCCAGTGCTTCCGGTTAGAATAAGGCAGTTCTTTAAGAGTGACATTTTAAATGGCCATCGGTCAGTTCCTGTGAAGCATACAGTTCCCAGGTTTTCTGTGCAGGTTGATGGAAATTTCAACCATGATCTGGTGATCAATCTATCTTCAGCAGAGTTATCAAGGGATCTCGTTCAACAGATTGTTCTGTTAGTTCATCAAACTTCTCACATTCATACAACTTCATGCAAGGAGAGAGGCTTTCATGGTATAAATGGTCAGTCCAAGATGGTTGATCACAGTGCAGATCATGGATCAGCTGATGCAAACAACAATTTAACTCTACCTCCTGTTGATTCTCTTCTTAAAGCTTTTGCACCACCTAACAATATAACTGGAAATGGGAAATCAAGCCTTCTGCTAGCAATATCTTCATTTGGCTATCAGATACTGCGATATCCTCATTTTGCTGAACTTTGTTGGTTCACTTCAAAACTTAAAGAAGGTCCTTCTGCAGACATAAGTGGACCTTGGAAGGGTTGGCCATTCAATTCCTGTATAGTGCGTCCTAACAACTCGCTAGAAATGGTAACTGTGGCAAAGAATATTAAAAGCAAAGAAAACTTGGGCCTAGTTAGAGGCCTGATTGCTGTTGGTTTATCGGCATATAGAGGTCTCTACACATCTCTCAGAGAAGTCTCTTCTGAGGTACGGAAGGTTCTTGAGATTCTAGTTGCGCAGATCAATGCAAAAGTTCAAGCCGGGAAAGATAGATATCAATATGTTCGCCTTTTGTCGCAAGTGGCCTATCTGGAAGATGTGGTCAATAGCTGGGCATACACCTTGCAGAGTTTAGAGCAGGATGCTCCATTGGCAGATGCTAAGCTTACCGCTCCGAGACTTCCGGATGATAACCATATGGATGATCAAGTTCAAAGCGAGGATTCCAAGCCAAAGGTTACAAGCAAATGCTCCAGTGAGCACGAAGTGCTGGAAATTGTCCCTGAAGGGTTTGATGCTGAAAAAGTTGTCAGTATTGACTTGAATGAACAAGTTGCTGATTTGGGTTGTTCTGAGGTTAGACTTGCAAGTTTAGATTGTTCTGGACAGAAGATTGTCCCATCTGATTCTACCCTGGATAATTGTCCTAAAGATTCAGATGAAGTTTTGAATGACCAGAATGGGACAAACCCTAAACCCCACGAGTCAGAAAATGACAAACACCATACAGTTGTTGCAGGAGATTCTGAATCTTTGAAATGTCCAAATGGATTTGAACGCACCGAATCTGTTGCTATTCCTGAGGATAGTCCGACTTCTGATATATTTGGCAGCATTAAGCTCTCAAGTTCTTTGACCAGTTACAACAACCTTAATGGTTTGTCCTTGACAGAGGCTGGTAGTAGACATAATGATGGTAAGGCTGATGCTCATGAGGTTACTGCAGACGTCAACTTTCCAAGCACCACCAGTAAAACCAATCTGCCTGAGTGCATAGATAAGCCTGATGCAAACTTCTCAAGTAAAACCAATGCTGATGTGCATAATGTTGATGTCAACTTCCCTCCCAAAATCAGTCCCTCTACGAAGTCTGAGTTTGTCTGCGTATATCATTGTTGCTCTGAATGCCTAGATACCCTTCACAGTTTGACACAGAAAATTCTTATCGAGGAGTGGCGATCAAATGGGAGCCAATGGACAGTGGAGGATGTTCATGATATTGTGGCATCACTATCTGTGGATCTTCTTTCAGCGGTTAGAAGAATTCATGTTTCCGGAGGTTTCAACAATTCATTTGGTGATAAAAGGAGACACAGAAATACTGAAACATATGAGTGGCCGGAATCAGGAACATGTGATTGCAATATCTCAGAAAATAAGATTCTTTCACCTGCTGAATGTAGATGCCACCCCAGCAGGGAGAGCTTTACTCAAAAGGCAAATGCTTCCGCAAATACTCATCTCAGGTTTGATTCAAAATTTGTTTTTCGAGATGGTTTGCTGGTTCATATGCATCCAGATAAAGATGTTTCTTTCCACTGTAAATTCGAGACGCTCTGCCTCTGTTCACTTATAGAGTTGATAGTAATGACCAAGTCACCTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

1885

Amino Acids

208.34

Weight (kDa)

5.57

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	428 - 502	6e-08	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	432 - 510	2e-10	PHD-like zinc-binding domain
AAA	PF00004	637 - 772	1.3e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	798 - 830	5.7e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	746, 3499, 5446
AatII	GACGTC	2 cut(s)	1246, 4998
Acc16I	TGCGCA	1 cut(s)	4284
Acc36I	ACCTGC	6 cut(s)	746, 1799, 2560, 3499, 3661, 5446
AccB1I	GGYRCC	1 cut(s)	2131
AccB7I	CCANNNNNTGG	2 cut(s)	2381, 3697
AccBSI	CCGCTC	3 cut(s)	141, 1367, 4439
AccI	GTMKAC	1 cut(s)	4951
AccII	CGCG	1 cut(s)	3397
AccIII	TCCGGA	2 cut(s)	4450, 5321
AclWI	GGATC	6 cut(s)	2258, 2379, 2392, 3741, 3868, 5295
AcoI	YGGCCR	4 cut(s)	3097, 3622, 4088, 5384
AcsI	RAATTY	9 cut(s)	1190, 2482, 2970, 2977, 3682, 5205, 5310, 5525, 5591
AcuI	CTGAAG	6 cut(s)	89, 915, 1161, 2840, 3699, 4572
AcvI	CACGTG	1 cut(s)	1979
AcyI	GRCGYC	2 cut(s)	1243, 4995
AdeI	CACNNNGTG	2 cut(s)	1982, 4534
AfaI	GTAC	7 cut(s)	882, 1522, 1562, 1751, 3010, 3053, 4257
AflII	CTTAAG	1 cut(s)	2393
AflIII	ACRYGT	3 cut(s)	1041, 2594, 5399
AjnI	CCWGG	9 cut(s)	167, 496, 1228, 1411, 1927, 2281, 3058, 3656, 4680
AjuI	GAANNNNNNNTTGG	2 cut(s)	3149, 3181
AloI	GAACNNNNNNTCC	2 cut(s)	1275, 1307
Alw21I	GWGCWC	5 cut(s)	167, 722, 1474, 1978, 4530
Alw44I	GTGCAC	3 cut(s)	718, 1470, 1974
AlwI	GGATC	6 cut(s)	2258, 2379, 2392, 3741, 3868, 5295
AlwNI	CAGNNNCTG	4 cut(s)	1184, 3638, 3997, 4943
Ama87I	CYCGRG	3 cut(s)	134, 205, 2214
Aor13HI	TCCGGA	2 cut(s)	4450, 5321
ApaI	GGGCCC	1 cut(s)	184
ApaLI	GTGCAC	3 cut(s)	718, 1470, 1974
ApeKI	GCWGC	6 cut(s)	743, 2459, 2510, 2636, 2765, 4878
ApoI	RAATTY	9 cut(s)	1190, 2482, 2970, 2977, 3682, 5205, 5310, 5525, 5591
AseI	ATTAAT	1 cut(s)	1961
Asp700I	GAANNNNTTC	1 cut(s)	1538
AspLEI	GCGC	4 cut(s)	2055, 3205, 3397, 4285
AsuC2I	CCSGG	7 cut(s)	129, 135, 136, 179, 206, 207, 4309
AsuII	TTCGAA	1 cut(s)	1605
AsuNHI	GCTAGC	1 cut(s)	3967
AvaI	CYCGRG	3 cut(s)	134, 205, 2214
AvaII	GGWCC	5 cut(s)	131, 1253, 2835, 4052, 4073
AxyI	CCTNAGG	1 cut(s)	4848
BaeGI	GKGCMC	5 cut(s)	175, 184, 722, 1474, 1978
BalI	TGGCCA	3 cut(s)	3099, 3624, 4090
BamHI	GGATCC	1 cut(s)	2384
BanI	GGYRCC	1 cut(s)	2131
BanII	GRGCYC	2 cut(s)	167, 184
BauI	CACGAG	2 cut(s)	1473, 4748
BbrPI	CACGTG	1 cut(s)	1979
BbsI	GAAGAC	3 cut(s)	1805, 2678, 3318
Bbv12I	GWGCWC	5 cut(s)	167, 722, 1474, 1978, 4530
BbvI	GCAGC	6 cut(s)	730, 2471, 2497, 2623, 2752, 4890
BceAI	ACGGC	2 cut(s)	1416, 2750
BcgI	CGANNNNNNTGC	4 cut(s)	26, 60, 4820, 4854
BciT130I	CCWGG	9 cut(s)	169, 498, 1230, 1413, 1929, 2283, 3060, 3658, 4682
BciVI	GTATCC	3 cut(s)	1132, 1935, 2725
BclI	TGATCA	4 cut(s)	1495, 3702, 3841, 4471
BcnI	CCSGG	7 cut(s)	129, 135, 136, 179, 206, 207, 4309
BfaI	CTAG	8 cut(s)	1902, 2145, 3182, 3968, 4127, 4178, 4277, 5177
BfmI	CTRYAG	5 cut(s)	753, 2438, 3171, 4059, 4989
BfoI	RGCGCY	1 cut(s)	2056
BfrI	CTTAAG	1 cut(s)	2393
BfuAI	ACCTGC	6 cut(s)	746, 1799, 2560, 3499, 3661, 5446
BfuI	GTATCC	3 cut(s)	1132, 1935, 2725
BglII	AGATCT	2 cut(s)	2434, 3092
BisI	GCNGC	9 cut(s)	212, 744, 1365, 2279, 2460, 2511, 2637, 2766, 4879
BlpI	GCTNAGC	2 cut(s)	2049, 4428
BlsI	GCNGC	9 cut(s)	213, 745, 1366, 2280, 2461, 2512, 2638, 2767, 4880
BmcAI	AGTACT	1 cut(s)	1562
Bme18I	GGWCC	5 cut(s)	131, 1253, 2835, 4052, 4073
BmeT110I	CYCGRG	3 cut(s)	134, 205, 2214
BmtI	GCTAGC	1 cut(s)	3971
BpiI	GAAGAC	3 cut(s)	1805, 2678, 3318
BplI	GAGNNNNNCTC	2 cut(s)	5461, 5493
BpmI	CTGGAG	4 cut(s)	151, 2122, 3425, 4504
Bpu10I	CCTNAGC	1 cut(s)	1134
Bpu1102I	GCTNAGC	2 cut(s)	2049, 4428
Bpu14I	TTCGAA	1 cut(s)	1605
BpuEI	CTTGAG	4 cut(s)	2439, 4289, 4876, 5050
BpuMI	CCSGG	7 cut(s)	129, 135, 136, 179, 206, 207, 4309
BsaAI	YACGTR	1 cut(s)	1979
BsaBI	GATNNNNATC	1 cut(s)	4320
BsaHI	GRCGYC	2 cut(s)	1243, 4995
BsaI	GGTCTC	2 cut(s)	487, 4226
BsaWI	WCCGGW	3 cut(s)	3580, 4450, 5321
Bse1I	ACTGG	8 cut(s)	727, 1528, 2375, 3572, 3946, 4521, 4905, 5016
Bse21I	CCTNAGG	1 cut(s)	4848
Bse3DI	GCAATG	4 cut(s)	733, 1275, 2956, 3437
Bse8I	GATNNNNATC	1 cut(s)	4320
BseAI	TCCGGA	2 cut(s)	4450, 5321
BseBI	CCWGG	9 cut(s)	169, 498, 1230, 1413, 1929, 2283, 3060, 3658, 4682
BseJI	GATNNNNATC	1 cut(s)	4320
BseMI	GCAATG	4 cut(s)	733, 1275, 2956, 3437
BseNI	ACTGG	8 cut(s)	727, 1528, 2375, 3572, 3946, 4521, 4905, 5016
BseSI	GKGCMC	5 cut(s)	175, 184, 722, 1474, 1978
BseXI	GCAGC	6 cut(s)	730, 2471, 2497, 2623, 2752, 4890
BseYI	CCCAGC	2 cut(s)	4377, 5459
BsgI	GTGCAG	4 cut(s)	1393, 2451, 3689, 3870
Bsh1236I	CGCG	1 cut(s)	3397
BshNI	GGYRCC	1 cut(s)	2131
BsiHKAI	GWGCWC	5 cut(s)	167, 722, 1474, 1978, 4530
BsiHKCI	CYCGRG	3 cut(s)	134, 205, 2214
BsiSI	CCGG	9 cut(s)	128, 135, 178, 206, 3581, 4308, 4451, 5322, 5387
BslFI	GGGAC	9 cut(s)	117, 187, 920, 1117, 2821, 4532, 4649, 4744, 5109
BsmBI	CGTCTC	2 cut(s)	1250, 5591
BsmFI	GGGAC	9 cut(s)	117, 187, 920, 1117, 2821, 4532, 4649, 4744, 5109
BsmI	GAATGC	2 cut(s)	349, 5177
Bso31I	GGTCTC	2 cut(s)	487, 4226
BsoBI	CYCGRG	3 cut(s)	134, 205, 2214
Bsp119I	TTCGAA	1 cut(s)	1605
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	7 cut(s)	167, 175, 184, 722, 1474, 1978, 4530
Bsp13I	TCCGGA	2 cut(s)	4450, 5321
Bsp1407I	TGTACA	1 cut(s)	1749
Bsp1720I	GCTNAGC	2 cut(s)	2049, 4428
Bsp19I	CCATGG	1 cut(s)	771
BspEI	TCCGGA	2 cut(s)	4450, 5321
BspFNI	CGCG	1 cut(s)	3397
BspHI	TCATGA	3 cut(s)	967, 4978, 5260
BspMAI	CTGCAG	4 cut(s)	757, 2442, 4063, 4993
BspMI	ACCTGC	6 cut(s)	746, 1799, 2560, 3499, 3661, 5446
BspOI	GCTAGC	1 cut(s)	3971
BspPI	GGATC	6 cut(s)	2258, 2379, 2392, 3741, 3868, 5295
BspQI	GCTCTTC	2 cut(s)	1180, 2755
BspT104I	TTCGAA	1 cut(s)	1605
BspT107I	GGYRCC	1 cut(s)	2131
BspTI	CTTAAG	1 cut(s)	2393
BspTNI	GGTCTC	2 cut(s)	487, 4226
BsrBI	CCGCTC	3 cut(s)	141, 1367, 4439
BsrDI	GCAATG	4 cut(s)	733, 1275, 2956, 3437
BsrGI	TGTACA	1 cut(s)	1749
BsrI	ACTGG	8 cut(s)	727, 1528, 2375, 3572, 3946, 4521, 4905, 5016
BssNI	GRCGYC	2 cut(s)	1243, 4995
BssSI	CACGAG	2 cut(s)	1473, 4748
BssT1I	CCWWGG	2 cut(s)	771, 4076
Bst2BI	CACGAG	2 cut(s)	1473, 4748
Bst2UI	CCWGG	9 cut(s)	169, 498, 1230, 1413, 1929, 2283, 3060, 3658, 4682
BstACI	GRCGYC	2 cut(s)	1243, 4995
BstAFI	CTTAAG	1 cut(s)	2393
BstAPI	GCANNNNNTGC	3 cut(s)	2003, 2870, 4534
BstAUI	TGTACA	1 cut(s)	1749
BstBAI	YACGTR	1 cut(s)	1979
BstBI	TTCGAA	1 cut(s)	1605
BstDSI	CCRYGG	1 cut(s)	771
BstENI	CCTNNNNNAGG	3 cut(s)	1902, 1932, 2803
BstFNI	CGCG	1 cut(s)	3397
BstH2I	RGCGCY	1 cut(s)	2056
BstHHI	GCGC	4 cut(s)	2055, 3205, 3397, 4285
BstNI	CCWGG	9 cut(s)	169, 498, 1230, 1413, 1929, 2283, 3060, 3658, 4682
BstNSI	RCATGY	6 cut(s)	1045, 1974, 2598, 2903, 3488, 5403
BstSFI	CTRYAG	5 cut(s)	753, 2438, 3171, 4059, 4989
BstSLI	GKGCMC	5 cut(s)	175, 184, 722, 1474, 1978
BstUI	CGCG	1 cut(s)	3397
BstV1I	GCAGC	6 cut(s)	730, 2471, 2497, 2623, 2752, 4890
BstV2I	GAAGAC	3 cut(s)	1805, 2678, 3318
BstX2I	RGATCY	5 cut(s)	2384, 2434, 3092, 3733, 5287
BstXI	CCANNNNNNTGG	1 cut(s)	1550
BstYI	RGATCY	5 cut(s)	2384, 2434, 3092, 3733, 5287
Bsu36I	CCTNAGG	1 cut(s)	4848
BsuI	GTATCC	3 cut(s)	1132, 1935, 2725
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	2 cut(s)	1484, 1695
BtsI	GCAGTG	1 cut(s)	2183
BveI	ACCTGC	6 cut(s)	746, 1799, 2560, 3499, 3661, 5446
CaiI	CAGNNNCTG	4 cut(s)	1184, 3638, 3997, 4943
CciI	TCATGA	3 cut(s)	967, 4978, 5260
CfoI	GCGC	4 cut(s)	2055, 3205, 3397, 4285
Cfr9I	CCCGGG	2 cut(s)	134, 205
CseI	GACGC	2 cut(s)	4100, 5608
Csp6I	GTAC	7 cut(s)	881, 1521, 1561, 1750, 3009, 3052, 4256
CspCI	CAANNNNNGTGG	2 cut(s)	1448, 1483
CviQI	GTAC	7 cut(s)	881, 1521, 1561, 1750, 3009, 3052, 4256
DraI	TTTAAA	1 cut(s)	3618
DraIII	CACNNNGTG	2 cut(s)	1982, 4534
EaeI	YGGCCR	4 cut(s)	3097, 3622, 4088, 5384
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	771, 4076
Eco147I	AGGCCT	1 cut(s)	4188
Eco24I	GRGCYC	2 cut(s)	167, 184
Eco31I	GGTCTC	2 cut(s)	487, 4226
Eco32I	GATATC	2 cut(s)	4004, 4322
Eco47I	GGWCC	5 cut(s)	131, 1253, 2835, 4052, 4073
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	6 cut(s)	89, 915, 1161, 2840, 3699, 4572
Eco72I	CACGTG	1 cut(s)	1979
Eco81I	CCTNAGG	1 cut(s)	4848
Eco88I	CYCGRG	3 cut(s)	134, 205, 2214
EcoICRI	GAGCTC	1 cut(s)	165
EcoNI	CCTNNNNNAGG	3 cut(s)	1902, 1932, 2803
EcoO109I	RGGNCCY	3 cut(s)	131, 181, 4052
EcoRI	GAATTC	1 cut(s)	5310
EcoRII	CCWGG	9 cut(s)	167, 496, 1228, 1411, 1927, 2281, 3058, 3656, 4680
EcoRV	GATATC	2 cut(s)	4004, 4322
EcoT14I	CCWWGG	2 cut(s)	771, 4076
EcoT22I	ATGCAT	2 cut(s)	1835, 5562
EcoT38I	GRGCYC	2 cut(s)	167, 184
ErhI	CCWWGG	2 cut(s)	771, 4076
Esp3I	CGTCTC	2 cut(s)	1250, 5591
FalI	AAGNNNNNCTT	2 cut(s)	4060, 4092
FaqI	GGGAC	9 cut(s)	117, 187, 920, 1117, 2821, 4532, 4649, 4744, 5109
FauI	CCCGC	5 cut(s)	115, 1327, 1406, 1577, 1947
FauNDI	CATATG	4 cut(s)	1205, 4464, 5377, 5556
FbaI	TGATCA	4 cut(s)	1495, 3702, 3841, 4471
FblI	GTMKAC	1 cut(s)	4951
Fnu4HI	GCNGC	9 cut(s)	212, 744, 1365, 2279, 2460, 2511, 2637, 2766, 4879
FriOI	GRGCYC	2 cut(s)	167, 184
Fsp4HI	GCNGC	9 cut(s)	212, 744, 1365, 2279, 2460, 2511, 2637, 2766, 4879
FspBI	CTAG	8 cut(s)	1902, 2145, 3182, 3968, 4127, 4178, 4277, 5177
FspI	TGCGCA	1 cut(s)	4284
GlaI	GCGC	4 cut(s)	2054, 3204, 3396, 4284
GluI	GCNGC	9 cut(s)	212, 744, 1365, 2279, 2460, 2511, 2637, 2766, 4879
GsaI	CCCAGC	2 cut(s)	4381, 5463
GsuI	CTGGAG	4 cut(s)	151, 2122, 3425, 4504
HaeII	RGCGCY	1 cut(s)	2056
HapII	CCGG	9 cut(s)	128, 135, 178, 206, 3581, 4308, 4451, 5322, 5387
HgaI	GACGC	2 cut(s)	4100, 5608
HhaI	GCGC	4 cut(s)	2055, 3205, 3397, 4285
Hin1I	GRCGYC	2 cut(s)	1243, 4995
Hin6I	GCGC	4 cut(s)	2053, 3203, 3395, 4283
HinP1I	GCGC	4 cut(s)	2053, 3203, 3395, 4283
HincII	GTYRAC	6 cut(s)	1147, 2093, 2181, 2962, 4999, 5104
HindII	GTYRAC	6 cut(s)	1147, 2093, 2181, 2962, 4999, 5104
HindIII	AAGCTT	3 cut(s)	2891, 3915, 4430
HpaII	CCGG	9 cut(s)	128, 135, 178, 206, 3581, 4308, 4451, 5322, 5387
Hpy99I	CGWCG	1 cut(s)	2969
HpyCH4IV	ACGT	6 cut(s)	1149, 1243, 1702, 1978, 3050, 4995
HpySE526I	ACGT	6 cut(s)	1149, 1243, 1702, 1978, 3050, 4995
Hsp92I	GRCGYC	2 cut(s)	1243, 4995
HspAI	GCGC	4 cut(s)	2053, 3203, 3395, 4283
KflI	GGGWCCC	1 cut(s)	131
Kpn2I	TCCGGA	2 cut(s)	4450, 5321
Ksp22I	TGATCA	4 cut(s)	1495, 3702, 3841, 4471
LguI	GCTCTTC	2 cut(s)	1180, 2755
Lsp1109I	GCAGC	6 cut(s)	730, 2471, 2497, 2623, 2752, 4890
MaeI	CTAG	8 cut(s)	1902, 2145, 3182, 3968, 4127, 4178, 4277, 5177
MaeII	ACGT	6 cut(s)	1149, 1243, 1702, 1978, 3050, 4995
MaeIII	GTNAC	8 cut(s)	1059, 3304, 3608, 4135, 4504, 4907, 4984, 5643
MbiI	CCGCTC	3 cut(s)	141, 1367, 4439
MflI	RGATCY	5 cut(s)	2384, 2434, 3092, 3733, 5287
MhlI	GDGCHC	7 cut(s)	167, 175, 184, 722, 1474, 1978, 4530
MlsI	TGGCCA	3 cut(s)	3099, 3624, 4090
MluNI	TGGCCA	3 cut(s)	3099, 3624, 4090
MlyI	GAGTC	7 cut(s)	942, 1324, 1760, 2058, 2540, 3524, 4760
MmeI	TCCRAC	9 cut(s)	438, 600, 774, 910, 1647, 1788, 2562, 2690, 4883
Mox20I	TGGCCA	3 cut(s)	3099, 3624, 4090
Mph1103I	ATGCAT	2 cut(s)	1835, 5562
MroI	TCCGGA	2 cut(s)	4450, 5321
MroXI	GAANNNNTTC	1 cut(s)	1538
MscI	TGGCCA	3 cut(s)	3099, 3624, 4090
MslI	CAYNNNNRTG	6 cut(s)	2844, 3003, 3430, 4467, 4959, 5380
Msp20I	TGGCCA	3 cut(s)	3099, 3624, 4090
MspA1I	CMGCKG	3 cut(s)	1401, 3866, 5300
MspCI	CTTAAG	1 cut(s)	2393
MspI	CCGG	9 cut(s)	128, 135, 178, 206, 3581, 4308, 4451, 5322, 5387
Mva1269I	GAATGC	2 cut(s)	349, 5177
MvaI	CCWGG	9 cut(s)	169, 498, 1230, 1413, 1929, 2283, 3060, 3658, 4682
MvnI	CGCG	1 cut(s)	3397
NciI	CCSGG	7 cut(s)	129, 135, 136, 179, 206, 207, 4309
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	4 cut(s)	1205, 4464, 5377, 5556
NheI	GCTAGC	1 cut(s)	3967
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	1059, 3608, 5643
NsbI	TGCGCA	1 cut(s)	4284
NsiI	ATGCAT	2 cut(s)	1835, 5562
NspI	RCATGY	6 cut(s)	1045, 1974, 2598, 2903, 3488, 5403
NspV	TTCGAA	1 cut(s)	1605
PaeI	GCATGC	1 cut(s)	2903
PaeR7I	CTCGAG	1 cut(s)	2214
PagI	TCATGA	3 cut(s)	967, 4978, 5260
PaqCI	CACCTGC	3 cut(s)	746, 3499, 5446
PceI	AGGCCT	1 cut(s)	4188
PciI	ACATGT	3 cut(s)	1041, 2594, 5399
PciSI	GCTCTTC	2 cut(s)	1180, 2755
PctI	GAATGC	2 cut(s)	349, 5177
PdmI	GAANNNNTTC	1 cut(s)	1538
PflFI	GACNNNGTC	1 cut(s)	5641
PflMI	CCANNNNNTGG	2 cut(s)	2381, 3697
PfoI	TCCNGGA	1 cut(s)	1927
PkrI	GCNGC	9 cut(s)	213, 745, 1366, 2280, 2461, 2512, 2638, 2767, 4880
PleI	GAGTC	7 cut(s)	941, 1323, 1760, 2058, 2539, 3523, 4759
PmaCI	CACGTG	1 cut(s)	1979
PmlI	CACGTG	1 cut(s)	1979
PpsI	GAGTC	7 cut(s)	941, 1323, 1760, 2058, 2539, 3523, 4759
Ppu21I	YACGTR	1 cut(s)	1979
PpuMI	RGGWCCY	2 cut(s)	131, 4052
PscI	ACATGT	3 cut(s)	1041, 2594, 5399
PshBI	ATTAAT	1 cut(s)	1961
Psp124BI	GAGCTC	1 cut(s)	167
Psp5II	RGGWCCY	2 cut(s)	131, 4052
Psp6I	CCWGG	9 cut(s)	167, 496, 1228, 1411, 1927, 2281, 3058, 3656, 4680
PspCI	CACGTG	1 cut(s)	1979
PspFI	CCCAGC	2 cut(s)	4377, 5459
PspGI	CCWGG	9 cut(s)	167, 496, 1228, 1411, 1927, 2281, 3058, 3656, 4680
PspOMI	GGGCCC	1 cut(s)	180
PspPPI	RGGWCCY	2 cut(s)	131, 4052
PsrI	GAACNNNNNNTAC	2 cut(s)	4248, 4280
PstI	CTGCAG	4 cut(s)	757, 2442, 4063, 4993
PstNI	CAGNNNCTG	4 cut(s)	1184, 3638, 3997, 4943
PsuI	RGATCY	5 cut(s)	2384, 2434, 3092, 3733, 5287
PsyI	GACNNNGTC	1 cut(s)	5641
PvuII	CAGCTG	1 cut(s)	3866
RsaI	GTAC	7 cut(s)	882, 1522, 1562, 1751, 3010, 3053, 4257
RsaNI	GTAC	7 cut(s)	881, 1521, 1561, 1750, 3009, 3052, 4256
RseI	CAYNNNNRTG	6 cut(s)	2844, 3003, 3430, 4467, 4959, 5380
SacI	GAGCTC	1 cut(s)	167
SapI	GCTCTTC	2 cut(s)	1180, 2755
SatI	GCNGC	9 cut(s)	212, 744, 1365, 2279, 2460, 2511, 2637, 2766, 4879
ScaI	AGTACT	1 cut(s)	1562
SchI	GAGTC	7 cut(s)	942, 1324, 1760, 2058, 2540, 3524, 4760
SduI	GDGCHC	7 cut(s)	167, 175, 184, 722, 1474, 1978, 4530
SfcI	CTRYAG	5 cut(s)	753, 2438, 3171, 4059, 4989
Sfr274I	CTCGAG	1 cut(s)	2214
SfuI	TTCGAA	1 cut(s)	1605
SinI	GGWCC	5 cut(s)	131, 1253, 2835, 4052, 4073
SlaI	CTCGAG	1 cut(s)	2214
SmaI	CCCGGG	2 cut(s)	136, 207
SmiMI	CAYNNNNRTG	6 cut(s)	2844, 3003, 3430, 4467, 4959, 5380
SmlI	CTYRAG	6 cut(s)	2214, 2393, 2454, 4268, 4891, 5065
SmoI	CTYRAG	6 cut(s)	2214, 2393, 2454, 4268, 4891, 5065
SphI	GCATGC	1 cut(s)	2903
SseBI	AGGCCT	1 cut(s)	4188
SspI	AATATT	4 cut(s)	1128, 2106, 3222, 4153
SspMI	CTAG	8 cut(s)	1902, 2145, 3182, 3968, 4127, 4178, 4277, 5177
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	4188
StyI	CCWWGG	2 cut(s)	771, 4076
TaiI	ACGT	6 cut(s)	1152, 1246, 1705, 1981, 3053, 4998
TaqII	GACCGA	1 cut(s)	3618
TatI	WGTACW	3 cut(s)	1520, 1560, 1749
TauI	GCSGC	3 cut(s)	214, 1367, 2281
TseFI	GTSAC	3 cut(s)	1059, 3608, 5643
TseI	GCWGC	6 cut(s)	743, 2459, 2510, 2636, 2765, 4878
Tsp45I	GTSAC	3 cut(s)	1059, 3608, 5643
TspGWI	ACGGA	4 cut(s)	2377, 2982, 3207, 4273
TspMI	CCCGGG	2 cut(s)	134, 205
Tth111I	GACNNNGTC	1 cut(s)	5641
Van91I	CCANNNNNTGG	2 cut(s)	2381, 3697
Vha464I	CTTAAG	1 cut(s)	2393
VneI	GTGCAC	3 cut(s)	718, 1470, 1974
VpaK11BI	GGWCC	5 cut(s)	131, 1253, 2835, 4052, 4073
VspI	ATTAAT	1 cut(s)	1961
XagI	CCTNNNNNAGG	3 cut(s)	1902, 1932, 2803
XapI	RAATTY	9 cut(s)	1190, 2482, 2970, 2977, 3682, 5205, 5310, 5525, 5591
XceI	RCATGY	6 cut(s)	1045, 1974, 2598, 2903, 3488, 5403
XhoI	CTCGAG	1 cut(s)	2214
XmaI	CCCGGG	2 cut(s)	134, 205
XmiI	GTMKAC	1 cut(s)	4951
XmnI	GAANNNNTTC	1 cut(s)	1538
XspI	CTAG	8 cut(s)	1902, 2145, 3182, 3968, 4127, 4178, 4277, 5177
ZraI	GACGTC	2 cut(s)	1244, 4996
ZrmI	AGTACT	1 cut(s)	1562
Zsp2I	ATGCAT	2 cut(s)	1835, 5562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.