ATPase family associated with various cellular activities (AAA)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15120 AT3G15120 |
| fragaria_vesca | FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 |
| malus_domestica | MD11G1256000.v1.1 |
| prunus_persica | Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 |
| pyrus_communis | pycom11g22640 |
| rosa_chinensis | RchiOBHm_Chr5g0032311 |
| rosa_laevigata | RLG00000033384 |
| rosa_multiflora | Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00048110 |
| rosa_rugosa | Rorug05G0130600 Rorug05G0130700 |
| rosa_samantha | Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800 |
| rosa_wichuraiana | Rw5G020480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3463 |
| AatII | GACGTC | 1 cut(s) | 1198 |
| Acc16I | TGCGCA | 1 cut(s) | 4248 |
| Acc36I | ACCTGC | 3 cut(s) | 1751, 2512, 3463 |
| AccB1I | GGYRCC | 2 cut(s) | 835, 2083 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2333 |
| AccBSI | CCGCTC | 1 cut(s) | 144 |
| AccI | GTMKAC | 3 cut(s) | 4347, 4597, 4906 |
| AccII | CGCG | 2 cut(s) | 178, 3657 |
| AccIII | TCCGGA | 3 cut(s) | 3018, 5209, 5417 |
| AclWI | GGATC | 6 cut(s) | 2210, 2344, 3705, 3832, 5391, 5488 |
| AcoI | YGGCCR | 4 cut(s) | 3049, 3513, 4052, 5474 |
| AcuI | CTGAAG | 4 cut(s) | 89, 3575, 3663, 4542 |
| AcvI | CACGTG | 1 cut(s) | 1931 |
| AcyI | GRCGYC | 1 cut(s) | 1195 |
| AdeI | CACNNNGTG | 2 cut(s) | 842, 1934 |
| AfaI | GTAC | 6 cut(s) | 1474, 1514, 1703, 2965, 3528, 5724 |
| AflII | CTTAAG | 2 cut(s) | 2345, 4960 |
| AflIII | ACRYGT | 2 cut(s) | 2546, 5489 |
| AgeI | ACCGGT | 1 cut(s) | 748 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3592 |
| AjiI | CACGTC | 1 cut(s) | 4558 |
| AjnI | CCWGG | 7 cut(s) | 170, 454, 1180, 1879, 2233, 3010, 4801 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1538, 1570, 3101, 3133 |
| AleI | CACNNNNGTG | 1 cut(s) | 2958 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1227, 1259, 3320, 3352 |
| Alw21I | GWGCWC | 5 cut(s) | 159, 170, 1426, 1930, 2609 |
| Alw44I | GTGCAC | 2 cut(s) | 1422, 1926 |
| AlwI | GGATC | 6 cut(s) | 2210, 2344, 3705, 3832, 5391, 5488 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 710, 3961 |
| Ama87I | CYCGRG | 3 cut(s) | 2166, 5011, 5134 |
| Aor13HI | TCCGGA | 3 cut(s) | 3018, 5209, 5417 |
| ApaI | GGGCCC | 1 cut(s) | 187 |
| ApaLI | GTGCAC | 2 cut(s) | 1422, 1926 |
| ApeKI | GCWGC | 9 cut(s) | 1316, 2101, 2411, 2462, 2588, 2717, 3431, 4833, 4940 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3776, 3808 |
| AseI | ATTAAT | 1 cut(s) | 1913 |
| AsiGI | ACCGGT | 1 cut(s) | 748 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 29, 934, 3870, 5464, 5581 |
| AspLEI | GCGC | 4 cut(s) | 178, 1922, 2007, 4249 |
| AsuC2I | CCSGG | 7 cut(s) | 132, 138, 188, 210, 1365, 4273, 5478 |
| AsuHPI | GGTGA | 8 cut(s) | 158, 635, 1184, 1946, 2006, 3676, 4080, 4120 |
| AsuII | TTCGAA | 1 cut(s) | 23 |
| AsuNHI | GCTAGC | 1 cut(s) | 3931 |
| AvaI | CYCGRG | 3 cut(s) | 2166, 5011, 5134 |
| AvaII | GGWCC | 4 cut(s) | 1205, 2787, 4016, 4037 |
| BaeGI | GKGCMC | 3 cut(s) | 187, 1426, 1930 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2865, 2880, 2898, 2913 |
| BalI | TGGCCA | 3 cut(s) | 3051, 3515, 4054 |
| BanI | GGYRCC | 2 cut(s) | 835, 2083 |
| BanII | GRGCYC | 3 cut(s) | 159, 170, 187 |
| BauI | CACGAG | 1 cut(s) | 1425 |
| BbrPI | CACGTG | 1 cut(s) | 1931 |
| BbsI | GAAGAC | 3 cut(s) | 1757, 3270, 3863 |
| Bbv12I | GWGCWC | 5 cut(s) | 159, 170, 1426, 1930, 2609 |
| BbvI | GCAGC | 9 cut(s) | 1303, 2113, 2423, 2449, 2575, 2704, 3418, 4845, 4927 |
| BceAI | ACGGC | 3 cut(s) | 68, 1368, 2195 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 4992, 5026, 5115, 5149 |
| BciT130I | CCWGG | 7 cut(s) | 172, 456, 1182, 1881, 2235, 3012, 4803 |
| BciVI | GTATCC | 3 cut(s) | 1887, 2677, 3015 |
| BclI | TGATCA | 4 cut(s) | 742, 1447, 3666, 3805 |
| BcnI | CCSGG | 7 cut(s) | 132, 138, 188, 210, 1365, 4273, 5478 |
| BfmI | CTRYAG | 4 cut(s) | 711, 2390, 3123, 4023 |
| BfoI | RGCGCY | 2 cut(s) | 1923, 2008 |
| BfrI | CTTAAG | 2 cut(s) | 2345, 4960 |
| BfuAI | ACCTGC | 3 cut(s) | 1751, 2512, 3463 |
| BfuI | GTATCC | 3 cut(s) | 1887, 2677, 3015 |
| BglII | AGATCT | 2 cut(s) | 2386, 3044 |
| BlpI | GCTNAGC | 1 cut(s) | 2001 |
| BmcAI | AGTACT | 2 cut(s) | 1514, 5724 |
| Bme18I | GGWCC | 4 cut(s) | 1205, 2787, 4016, 4037 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3592 |
| BmeT110I | CYCGRG | 3 cut(s) | 2166, 5011, 5134 |
| BmgBI | CACGTC | 1 cut(s) | 4558 |
| BmtI | GCTAGC | 1 cut(s) | 3935 |
| BpiI | GAAGAC | 3 cut(s) | 1757, 3270, 3863 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 5551, 5583 |
| BpmI | CTGGAG | 4 cut(s) | 154, 4404, 4831, 4965 |
| Bpu10I | CCTNAGC | 3 cut(s) | 158, 1086, 5038 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2001 |
| Bpu14I | TTCGAA | 1 cut(s) | 23 |
| BpuEI | CTTGAG | 4 cut(s) | 2391, 2828, 4253, 5068 |
| BpuMI | CCSGG | 7 cut(s) | 132, 138, 188, 210, 1365, 4273, 5478 |
| BsaAI | YACGTR | 1 cut(s) | 1931 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4284 |
| BsaHI | GRCGYC | 1 cut(s) | 1195 |
| BsaI | GGTCTC | 1 cut(s) | 4190 |
| BsaWI | WCCGGW | 6 cut(s) | 748, 3018, 3535, 3544, 5209, 5417 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 269, 299, 485, 515, 2536, 2566, 3841, 3871 |
| Bse118I | RCCGGY | 2 cut(s) | 748, 5527 |
| Bse1I | ACTGG | 4 cut(s) | 1480, 2327, 4848, 4971 |
| Bse3DI | GCAATG | 2 cut(s) | 2908, 3398 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4284 |
| BseAI | TCCGGA | 3 cut(s) | 3018, 5209, 5417 |
| BseBI | CCWGG | 7 cut(s) | 172, 456, 1182, 1881, 2235, 3012, 4803 |
| BseJI | GATNNNNATC | 1 cut(s) | 4284 |
| BseMI | GCAATG | 2 cut(s) | 2908, 3398 |
| BseNI | ACTGG | 4 cut(s) | 1480, 2327, 4848, 4971 |
| BseSI | GKGCMC | 3 cut(s) | 187, 1426, 1930 |
| BseXI | GCAGC | 9 cut(s) | 1303, 2113, 2423, 2449, 2575, 2704, 3418, 4845, 4927 |
| BseYI | CCCAGC | 3 cut(s) | 3089, 4341, 4888 |
| BsgI | GTGCAG | 2 cut(s) | 1302, 2403 |
| Bsh1236I | CGCG | 2 cut(s) | 178, 3657 |
| Bsh1285I | CGRYCG | 1 cut(s) | 8 |
| BshNI | GGYRCC | 2 cut(s) | 835, 2083 |
| BshTI | ACCGGT | 1 cut(s) | 748 |
| BsiEI | CGRYCG | 1 cut(s) | 8 |
| BsiHKAI | GWGCWC | 5 cut(s) | 159, 170, 1426, 1930, 2609 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2166, 5011, 5134 |
| BslFI | GGGAC | 6 cut(s) | 875, 1069, 2187, 2773, 4714, 5205 |
| BsmBI | CGTCTC | 1 cut(s) | 1202 |
| BsmFI | GGGAC | 6 cut(s) | 875, 1069, 2187, 2773, 4714, 5205 |
| BsmI | GAATGC | 3 cut(s) | 3817, 4784, 5273 |
| Bso31I | GGTCTC | 1 cut(s) | 4190 |
| BsoBI | CYCGRG | 3 cut(s) | 2166, 5011, 5134 |
| Bsp119I | TTCGAA | 1 cut(s) | 23 |
| Bsp120I | GGGCCC | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 6 cut(s) | 159, 170, 187, 1426, 1930, 2609 |
| Bsp13I | TCCGGA | 3 cut(s) | 3018, 5209, 5417 |
| Bsp1407I | TGTACA | 1 cut(s) | 1701 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2001 |
| Bsp19I | CCATGG | 2 cut(s) | 2956, 5336 |
| BspEI | TCCGGA | 3 cut(s) | 3018, 5209, 5417 |
| BspFNI | CGCG | 2 cut(s) | 178, 3657 |
| BspHI | TCATGA | 1 cut(s) | 5356 |
| BspMAI | CTGCAG | 3 cut(s) | 715, 2394, 4027 |
| BspMI | ACCTGC | 3 cut(s) | 1751, 2512, 3463 |
| BspOI | GCTAGC | 1 cut(s) | 3935 |
| BspPI | GGATC | 6 cut(s) | 2210, 2344, 3705, 3832, 5391, 5488 |
| BspQI | GCTCTTC | 2 cut(s) | 1132, 1327 |
| BspT104I | TTCGAA | 1 cut(s) | 23 |
| BspT107I | GGYRCC | 2 cut(s) | 835, 2083 |
| BspTI | CTTAAG | 2 cut(s) | 2345, 4960 |
| BspTNI | GGTCTC | 1 cut(s) | 4190 |
| BsrBI | CCGCTC | 1 cut(s) | 144 |
| BsrDI | GCAATG | 2 cut(s) | 2908, 3398 |
| BsrFI | RCCGGY | 2 cut(s) | 748, 5527 |
| BsrGI | TGTACA | 1 cut(s) | 1701 |
| BsrI | ACTGG | 4 cut(s) | 1480, 2327, 4848, 4971 |
| BssAI | RCCGGY | 2 cut(s) | 748, 5527 |
| BssNAI | GTATAC | 1 cut(s) | 4348 |
| BssNI | GRCGYC | 1 cut(s) | 1195 |
| BssSI | CACGAG | 1 cut(s) | 1425 |
| BssT1I | CCWWGG | 6 cut(s) | 432, 2956, 3157, 4040, 4650, 5336 |
| Bst1107I | GTATAC | 1 cut(s) | 4348 |
| Bst2BI | CACGAG | 1 cut(s) | 1425 |
| Bst2UI | CCWGG | 7 cut(s) | 172, 456, 1182, 1881, 2235, 3012, 4803 |
| BstACI | GRCGYC | 1 cut(s) | 1195 |
| BstAFI | CTTAAG | 2 cut(s) | 2345, 4960 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 710, 1035, 1955, 2822, 4504 |
| BstAUI | TGTACA | 1 cut(s) | 1701 |
| BstBAI | YACGTR | 1 cut(s) | 1931 |
| BstBI | TTCGAA | 1 cut(s) | 23 |
| BstDSI | CCRYGG | 3 cut(s) | 2956, 5284, 5336 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1854, 1884, 2755 |
| BstFNI | CGCG | 2 cut(s) | 178, 3657 |
| BstH2I | RGCGCY | 2 cut(s) | 1923, 2008 |
| BstHHI | GCGC | 4 cut(s) | 178, 1922, 2007, 4249 |
| BstMCI | CGRYCG | 1 cut(s) | 8 |
| BstNI | CCWGG | 7 cut(s) | 172, 456, 1182, 1881, 2235, 3012, 4803 |
| BstNSI | RCATGY | 6 cut(s) | 2550, 2770, 3452, 3779, 5493, 5650 |
| BstSFI | CTRYAG | 4 cut(s) | 711, 2390, 3123, 4023 |
| BstSLI | GKGCMC | 3 cut(s) | 187, 1426, 1930 |
| BstUI | CGCG | 2 cut(s) | 178, 3657 |
| BstV1I | GCAGC | 9 cut(s) | 1303, 2113, 2423, 2449, 2575, 2704, 3418, 4845, 4927 |
| BstV2I | GAAGAC | 3 cut(s) | 1757, 3270, 3863 |
| BstX2I | RGATCY | 5 cut(s) | 2336, 2386, 3044, 3697, 5383 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1502 |
| BstYI | RGATCY | 5 cut(s) | 2336, 2386, 3044, 3697, 5383 |
| BstZ17I | GTATAC | 1 cut(s) | 4348 |
| BsuI | GTATCC | 3 cut(s) | 1887, 2677, 3015 |
| BtgI | CCRYGG | 3 cut(s) | 2956, 5284, 5336 |
| BtgZI | GCGATG | 3 cut(s) | 699, 1436, 1647 |
| BtrI | CACGTC | 1 cut(s) | 4558 |
| BtsI | GCAGTG | 3 cut(s) | 2135, 3243, 4407 |
| BveI | ACCTGC | 3 cut(s) | 1751, 2512, 3463 |
| CaiI | CAGNNNCTG | 2 cut(s) | 710, 3961 |
| CciI | TCATGA | 1 cut(s) | 5356 |
| CfoI | GCGC | 4 cut(s) | 178, 1922, 2007, 4249 |
| Cfr10I | RCCGGY | 2 cut(s) | 748, 5527 |
| CseI | GACGC | 1 cut(s) | 3437 |
| Csp6I | GTAC | 6 cut(s) | 1473, 1513, 1702, 2964, 3527, 5723 |
| CspAI | ACCGGT | 1 cut(s) | 748 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1400, 1435 |
| CviQI | GTAC | 6 cut(s) | 1473, 1513, 1702, 2964, 3527, 5723 |
| DraI | TTTAAA | 1 cut(s) | 3582 |
| DraIII | CACNNNGTG | 2 cut(s) | 842, 1934 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3592 |
| EaeI | YGGCCR | 4 cut(s) | 3049, 3513, 4052, 5474 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3592 |
| EciI | GGCGGA | 2 cut(s) | 665, 5546 |
| Ecl136II | GAGCTC | 2 cut(s) | 157, 168 |
| Eco130I | CCWWGG | 6 cut(s) | 432, 2956, 3157, 4040, 4650, 5336 |
| Eco24I | GRGCYC | 3 cut(s) | 159, 170, 187 |
| Eco31I | GGTCTC | 1 cut(s) | 4190 |
| Eco32I | GATATC | 2 cut(s) | 3968, 4286 |
| Eco47I | GGWCC | 4 cut(s) | 1205, 2787, 4016, 4037 |
| Eco53kI | GAGCTC | 2 cut(s) | 157, 168 |
| Eco57I | CTGAAG | 4 cut(s) | 89, 3575, 3663, 4542 |
| Eco72I | CACGTG | 1 cut(s) | 1931 |
| Eco88I | CYCGRG | 3 cut(s) | 2166, 5011, 5134 |
| EcoICRI | GAGCTC | 2 cut(s) | 157, 168 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1854, 1884, 2755 |
| EcoO109I | RGGNCCY | 3 cut(s) | 184, 4016, 4150 |
| EcoRI | GAATTC | 2 cut(s) | 2932, 5406 |
| EcoRII | CCWGG | 7 cut(s) | 170, 454, 1180, 1879, 2233, 3010, 4801 |
| EcoRV | GATATC | 2 cut(s) | 3968, 4286 |
| EcoT14I | CCWWGG | 6 cut(s) | 432, 2956, 3157, 4040, 4650, 5336 |
| EcoT22I | ATGCAT | 3 cut(s) | 1787, 4440, 5652 |
| EcoT38I | GRGCYC | 3 cut(s) | 159, 170, 187 |
| ErhI | CCWWGG | 6 cut(s) | 432, 2956, 3157, 4040, 4650, 5336 |
| Esp3I | CGTCTC | 1 cut(s) | 1202 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4024, 4056 |
| FaqI | GGGAC | 6 cut(s) | 875, 1069, 2187, 2773, 4714, 5205 |
| FauI | CCCGC | 5 cut(s) | 118, 174, 1358, 1899, 4891 |
| FauNDI | CATATG | 2 cut(s) | 1157, 4434 |
| FbaI | TGATCA | 4 cut(s) | 742, 1447, 3666, 3805 |
| FblI | GTMKAC | 3 cut(s) | 4347, 4597, 4906 |
| FriOI | GRGCYC | 3 cut(s) | 159, 170, 187 |
| FspI | TGCGCA | 1 cut(s) | 4248 |
| GlaI | GCGC | 4 cut(s) | 177, 1921, 2006, 4248 |
| GsaI | CCCAGC | 3 cut(s) | 3093, 4345, 4892 |
| GsuI | CTGGAG | 4 cut(s) | 154, 4404, 4831, 4965 |
| HaeII | RGCGCY | 2 cut(s) | 1923, 2008 |
| HgaI | GACGC | 1 cut(s) | 3437 |
| HhaI | GCGC | 4 cut(s) | 178, 1922, 2007, 4249 |
| Hin1I | GRCGYC | 1 cut(s) | 1195 |
| Hin6I | GCGC | 4 cut(s) | 176, 1920, 2005, 4247 |
| HinP1I | GCGC | 4 cut(s) | 176, 1920, 2005, 4247 |
| HincII | GTYRAC | 6 cut(s) | 1099, 2133, 2917, 4954, 5077, 5200 |
| HindII | GTYRAC | 6 cut(s) | 1099, 2133, 2917, 4954, 5077, 5200 |
| HindIII | AAGCTT | 3 cut(s) | 344, 959, 4922 |
| HphI | GGTGA | 8 cut(s) | 158, 635, 1184, 1946, 2006, 3676, 4080, 4120 |
| Hpy99I | CGWCG | 1 cut(s) | 13 |
| HpyCH4IV | ACGT | 7 cut(s) | 865, 1195, 1654, 1930, 4557, 4762, 5664 |
| HpySE526I | ACGT | 7 cut(s) | 865, 1195, 1654, 1930, 4557, 4762, 5664 |
| Hsp92I | GRCGYC | 1 cut(s) | 1195 |
| HspAI | GCGC | 4 cut(s) | 176, 1920, 2005, 4247 |
| Kpn2I | TCCGGA | 3 cut(s) | 3018, 5209, 5417 |
| KroI | GCCGGC | 1 cut(s) | 5527 |
| KroNI | GCCGGC | 1 cut(s) | 5529 |
| Ksp22I | TGATCA | 4 cut(s) | 742, 1447, 3666, 3805 |
| LguI | GCTCTTC | 2 cut(s) | 1132, 1327 |
| Lsp1109I | GCAGC | 9 cut(s) | 1303, 2113, 2423, 2449, 2575, 2704, 3418, 4845, 4927 |
| MaeII | ACGT | 7 cut(s) | 865, 1195, 1654, 1930, 4557, 4762, 5664 |
| MaeIII | GTNAC | 6 cut(s) | 1011, 3256, 3572, 3778, 4855, 4983 |
| MbiI | CCGCTC | 1 cut(s) | 144 |
| MflI | RGATCY | 5 cut(s) | 2336, 2386, 3044, 3697, 5383 |
| MhlI | GDGCHC | 6 cut(s) | 159, 170, 187, 1426, 1930, 2609 |
| MlsI | TGGCCA | 3 cut(s) | 3051, 3515, 4054 |
| MluNI | TGGCCA | 3 cut(s) | 3051, 3515, 4054 |
| MlyI | GAGTC | 7 cut(s) | 897, 1276, 1712, 2010, 2492, 3488, 4730 |
| Mox20I | TGGCCA | 3 cut(s) | 3051, 3515, 4054 |
| Mph1103I | ATGCAT | 3 cut(s) | 1787, 4440, 5652 |
| MreI | CGCCGGCG | 1 cut(s) | 5527 |
| MroI | TCCGGA | 3 cut(s) | 3018, 5209, 5417 |
| MroNI | GCCGGC | 1 cut(s) | 5527 |
| MroXI | GAANNNNTTC | 5 cut(s) | 29, 934, 3870, 5464, 5581 |
| MscI | TGGCCA | 3 cut(s) | 3051, 3515, 4054 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2796, 2958, 3391, 4914 |
| Msp20I | TGGCCA | 3 cut(s) | 3051, 3515, 4054 |
| MspA1I | CMGCKG | 1 cut(s) | 1353 |
| MspCI | CTTAAG | 2 cut(s) | 2345, 4960 |
| Mva1269I | GAATGC | 3 cut(s) | 3817, 4784, 5273 |
| MvaI | CCWGG | 7 cut(s) | 172, 456, 1182, 1881, 2235, 3012, 4803 |
| MvnI | CGCG | 2 cut(s) | 178, 3657 |
| NaeI | GCCGGC | 1 cut(s) | 5529 |
| NciI | CCSGG | 7 cut(s) | 132, 138, 188, 210, 1365, 4273, 5478 |
| NcoI | CCATGG | 2 cut(s) | 2956, 5336 |
| NdeI | CATATG | 2 cut(s) | 1157, 4434 |
| NgoMIV | GCCGGC | 1 cut(s) | 5527 |
| NheI | GCTAGC | 1 cut(s) | 3931 |
| NmeAIII | GCCGAG | 1 cut(s) | 39 |
| NmuCI | GTSAC | 3 cut(s) | 1011, 3572, 4855 |
| NsbI | TGCGCA | 1 cut(s) | 4248 |
| NsiI | ATGCAT | 3 cut(s) | 1787, 4440, 5652 |
| NspI | RCATGY | 6 cut(s) | 2550, 2770, 3452, 3779, 5493, 5650 |
| NspV | TTCGAA | 1 cut(s) | 23 |
| OliI | CACNNNNGTG | 1 cut(s) | 2958 |
| PaeR7I | CTCGAG | 3 cut(s) | 2166, 5011, 5134 |
| PagI | TCATGA | 1 cut(s) | 5356 |
| PaqCI | CACCTGC | 1 cut(s) | 3463 |
| PciI | ACATGT | 2 cut(s) | 2546, 5489 |
| PciSI | GCTCTTC | 2 cut(s) | 1132, 1327 |
| PctI | GAATGC | 3 cut(s) | 3817, 4784, 5273 |
| PdiI | GCCGGC | 1 cut(s) | 5529 |
| PdmI | GAANNNNTTC | 5 cut(s) | 29, 934, 3870, 5464, 5581 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2333 |
| PfoI | TCCNGGA | 1 cut(s) | 1879 |
| PinAI | ACCGGT | 1 cut(s) | 748 |
| Ple19I | CGATCG | 1 cut(s) | 8 |
| PleI | GAGTC | 7 cut(s) | 896, 1275, 1712, 2010, 2491, 3487, 4729 |
| PmaCI | CACGTG | 1 cut(s) | 1931 |
| PmlI | CACGTG | 1 cut(s) | 1931 |
| PpsI | GAGTC | 7 cut(s) | 896, 1275, 1712, 2010, 2491, 3487, 4729 |
| Ppu21I | YACGTR | 1 cut(s) | 1931 |
| PpuMI | RGGWCCY | 1 cut(s) | 4016 |
| PscI | ACATGT | 2 cut(s) | 2546, 5489 |
| PshBI | ATTAAT | 1 cut(s) | 1913 |
| Psp124BI | GAGCTC | 2 cut(s) | 159, 170 |
| Psp5II | RGGWCCY | 1 cut(s) | 4016 |
| Psp6I | CCWGG | 7 cut(s) | 170, 454, 1180, 1879, 2233, 3010, 4801 |
| PspCI | CACGTG | 1 cut(s) | 1931 |
| PspFI | CCCAGC | 3 cut(s) | 3089, 4341, 4888 |
| PspGI | CCWGG | 7 cut(s) | 170, 454, 1180, 1879, 2233, 3010, 4801 |
| PspOMI | GGGCCC | 1 cut(s) | 183 |
| PspPPI | RGGWCCY | 1 cut(s) | 4016 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5337, 5369 |
| PstI | CTGCAG | 3 cut(s) | 715, 2394, 4027 |
| PstNI | CAGNNNCTG | 2 cut(s) | 710, 3961 |
| PsuI | RGATCY | 5 cut(s) | 2336, 2386, 3044, 3697, 5383 |
| PvuI | CGATCG | 1 cut(s) | 8 |
| RsaI | GTAC | 6 cut(s) | 1474, 1514, 1703, 2965, 3528, 5724 |
| RsaNI | GTAC | 6 cut(s) | 1473, 1513, 1702, 2964, 3527, 5723 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2796, 2958, 3391, 4914 |
| SacI | GAGCTC | 2 cut(s) | 159, 170 |
| SapI | GCTCTTC | 2 cut(s) | 1132, 1327 |
| ScaI | AGTACT | 2 cut(s) | 1514, 5724 |
| SchI | GAGTC | 7 cut(s) | 897, 1276, 1712, 2010, 2492, 3488, 4730 |
| SduI | GDGCHC | 6 cut(s) | 159, 170, 187, 1426, 1930, 2609 |
| SfcI | CTRYAG | 4 cut(s) | 711, 2390, 3123, 4023 |
| Sfr274I | CTCGAG | 3 cut(s) | 2166, 5011, 5134 |
| SfuI | TTCGAA | 1 cut(s) | 23 |
| SgrAI | CRCCGGYG | 1 cut(s) | 5527 |
| SinI | GGWCC | 4 cut(s) | 1205, 2787, 4016, 4037 |
| SlaI | CTCGAG | 3 cut(s) | 2166, 5011, 5134 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2796, 2958, 3391, 4914 |
| SmlI | CTYRAG | 9 cut(s) | 2166, 2345, 2406, 2807, 4232, 4960, 5011, 5083, 5134 |
| SmoI | CTYRAG | 9 cut(s) | 2166, 2345, 2406, 2807, 4232, 4960, 5011, 5083, 5134 |
| SspI | AATATT | 4 cut(s) | 1080, 2058, 3174, 5464 |
| SstI | GAGCTC | 2 cut(s) | 159, 170 |
| StyI | CCWWGG | 6 cut(s) | 432, 2956, 3157, 4040, 4650, 5336 |
| TaiI | ACGT | 7 cut(s) | 868, 1198, 1657, 1933, 4560, 4765, 5667 |
| TatI | WGTACW | 4 cut(s) | 1472, 1512, 1701, 5722 |
| TauI | GCSGC | 3 cut(s) | 181, 217, 2233 |
| TseFI | GTSAC | 3 cut(s) | 1011, 3572, 4855 |
| TseI | GCWGC | 9 cut(s) | 1316, 2101, 2411, 2462, 2588, 2717, 3431, 4833, 4940 |
| Tsp45I | GTSAC | 3 cut(s) | 1011, 3572, 4855 |
| TspGWI | ACGGA | 3 cut(s) | 836, 1030, 3159 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2333 |
| Vha464I | CTTAAG | 2 cut(s) | 2345, 4960 |
| VneI | GTGCAC | 2 cut(s) | 1422, 1926 |
| VpaK11BI | GGWCC | 4 cut(s) | 1205, 2787, 4016, 4037 |
| VspI | ATTAAT | 1 cut(s) | 1913 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1854, 1884, 2755 |
| XbaI | TCTAGA | 1 cut(s) | 2090 |
| XceI | RCATGY | 6 cut(s) | 2550, 2770, 3452, 3779, 5493, 5650 |
| XhoI | CTCGAG | 3 cut(s) | 2166, 5011, 5134 |
| XmiI | GTMKAC | 3 cut(s) | 4347, 4597, 4906 |
| XmnI | GAANNNNTTC | 5 cut(s) | 29, 934, 3870, 5464, 5581 |
| ZraI | GACGTC | 1 cut(s) | 1196 |
| ZrmI | AGTACT | 2 cut(s) | 1514, 5724 |
| Zsp2I | ATGCAT | 3 cut(s) | 1787, 4440, 5652 |