ATPase family associated with various cellular activities (AAA)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15120 AT3G15120 |
| fragaria_vesca | FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 |
| malus_domestica | MD11G1256000.v1.1 |
| prunus_persica | Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 |
| pyrus_communis | pycom11g22640 |
| rosa_chinensis | RchiOBHm_Chr5g0032311 |
| rosa_laevigata | RLG00000033384 |
| rosa_multiflora | Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00048110 |
| rosa_rugosa | Rorug05G0130600 Rorug05G0130700 |
| rosa_samantha | Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800 |
| rosa_wichuraiana | Rw5G020480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3478 |
| AatII | GACGTC | 1 cut(s) | 1243 |
| Acc16I | TGCGCA | 1 cut(s) | 1974 |
| Acc36I | ACCTGC | 3 cut(s) | 1796, 3478, 3640 |
| AccB1I | GGYRCC | 2 cut(s) | 1425, 2128 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1546, 2378, 3676 |
| AccI | GTMKAC | 3 cut(s) | 1075, 4215, 4630 |
| AcoI | YGGCCR | 5 cut(s) | 969, 2363, 3091, 4070, 5282 |
| AcsI | RAATTY | 8 cut(s) | 712, 1502, 2479, 4159, 4638, 4874, 5103, 5489 |
| AcuI | CTGAAG | 3 cut(s) | 1158, 2837, 5298 |
| AcyI | GRCGYC | 1 cut(s) | 1240 |
| AfaI | GTAC | 9 cut(s) | 1356, 1748, 2449, 3366, 3555, 3796, 4504, 4864, 4906 |
| AfeI | AGCGCT | 1 cut(s) | 3457 |
| AflIII | ACRYGT | 2 cut(s) | 2591, 5069 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3607 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 449, 481, 3143, 3175 |
| AleI | CACNNNNGTG | 1 cut(s) | 2997 |
| Alw21I | GWGCWC | 6 cut(s) | 161, 194, 440, 1471, 3007, 5372 |
| Alw44I | GTGCAC | 2 cut(s) | 1467, 3003 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 905, 1181, 2378, 2574, 3979, 5180 |
| Ama87I | CYCGRG | 2 cut(s) | 2211, 5008 |
| Aor51HI | AGCGCT | 1 cut(s) | 3457 |
| ApaI | GGGCCC | 1 cut(s) | 211 |
| ApaLI | GTGCAC | 2 cut(s) | 1467, 3003 |
| ApoI | RAATTY | 8 cut(s) | 712, 1502, 2479, 4159, 4638, 4874, 5103, 5489 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2149, 2181 |
| AseI | ATTAAT | 2 cut(s) | 1958, 3218 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1535 |
| AspA2I | CCTAGG | 1 cut(s) | 482 |
| AspLEI | GCGC | 5 cut(s) | 186, 1975, 2052, 3458, 4832 |
| AsuC2I | CCSGG | 4 cut(s) | 141, 163, 321, 1952 |
| AsuII | TTCGAA | 1 cut(s) | 3061 |
| AsuNHI | GCTAGC | 1 cut(s) | 3949 |
| AvaI | CYCGRG | 2 cut(s) | 2211, 5008 |
| AvaII | GGWCC | 7 cut(s) | 1250, 1288, 2832, 3396, 3875, 4034, 4055 |
| AvrII | CCTAGG | 1 cut(s) | 482 |
| BaeGI | GKGCMC | 4 cut(s) | 211, 1471, 3007, 3440 |
| BalI | TGGCCA | 5 cut(s) | 971, 2365, 3093, 4072, 5284 |
| BamHI | GGATCC | 3 cut(s) | 2381, 4799, 5458 |
| BanI | GGYRCC | 2 cut(s) | 1425, 2128 |
| BanII | GRGCYC | 4 cut(s) | 161, 194, 202, 211 |
| BauI | CACGAG | 1 cut(s) | 1470 |
| BbsI | GAAGAC | 3 cut(s) | 1802, 3429, 4359 |
| Bbv12I | GWGCWC | 6 cut(s) | 161, 194, 440, 1471, 3007, 5372 |
| BceAI | ACGGC | 3 cut(s) | 1413, 2299, 2747 |
| BciVI | GTATCC | 1 cut(s) | 1932 |
| BclI | TGATCA | 5 cut(s) | 567, 1492, 1522, 3681, 4453 |
| BcnI | CCSGG | 4 cut(s) | 141, 163, 321, 1952 |
| BfmI | CTRYAG | 4 cut(s) | 3165, 3693, 4894, 5145 |
| BfoI | RGCGCY | 2 cut(s) | 2053, 3459 |
| BfuAI | ACCTGC | 3 cut(s) | 1796, 3478, 3640 |
| BfuI | GTATCC | 1 cut(s) | 1932 |
| BglII | AGATCT | 2 cut(s) | 2431, 3086 |
| BlnI | CCTAGG | 1 cut(s) | 482 |
| BlpI | GCTNAGC | 3 cut(s) | 2046, 3999, 4425 |
| BmcAI | AGTACT | 1 cut(s) | 3555 |
| Bme18I | GGWCC | 7 cut(s) | 1250, 1288, 2832, 3396, 3875, 4034, 4055 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3607 |
| BmeT110I | CYCGRG | 2 cut(s) | 2211, 5008 |
| BmrI | ACTGGG | 1 cut(s) | 206 |
| BmtI | GCTAGC | 1 cut(s) | 3953 |
| BmuI | ACTGGG | 1 cut(s) | 206 |
| BpiI | GAAGAC | 3 cut(s) | 1802, 3429, 4359 |
| BpmI | CTGGAG | 5 cut(s) | 178, 197, 4120, 4431, 5241 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 2046, 3999, 4425 |
| Bpu14I | TTCGAA | 1 cut(s) | 3061 |
| BpuEI | CTTGAG | 2 cut(s) | 2436, 4280 |
| BpuMI | CCSGG | 4 cut(s) | 141, 163, 321, 1952 |
| BsaBI | GATNNNNATC | 2 cut(s) | 984, 4311 |
| BsaHI | GRCGYC | 1 cut(s) | 1240 |
| BsaI | GGTCTC | 4 cut(s) | 767, 1892, 4435, 5489 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2581, 2611, 3180, 3210 |
| Bse118I | RCCGGY | 2 cut(s) | 2423, 2743 |
| Bse3DI | GCAATG | 3 cut(s) | 748, 4921, 5302 |
| Bse8I | GATNNNNATC | 2 cut(s) | 984, 4311 |
| BseJI | GATNNNNATC | 2 cut(s) | 984, 4311 |
| BseMI | GCAATG | 3 cut(s) | 748, 4921, 5302 |
| BseRI | GAGGAG | 4 cut(s) | 317, 2646, 2739, 3320 |
| BseSI | GKGCMC | 4 cut(s) | 211, 1471, 3007, 3440 |
| BseYI | CCCAGC | 1 cut(s) | 4368 |
| BsgI | GTGCAG | 7 cut(s) | 219, 1501, 2034, 2448, 2879, 3668, 4367 |
| Bsh1285I | CGRYCG | 1 cut(s) | 41 |
| BshNI | GGYRCC | 2 cut(s) | 1425, 2128 |
| BsiEI | CGRYCG | 1 cut(s) | 41 |
| BsiHKAI | GWGCWC | 6 cut(s) | 161, 194, 440, 1471, 3007, 5372 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2211, 5008 |
| BsiSI | CCGG | 8 cut(s) | 140, 162, 187, 320, 1951, 2137, 2424, 2744 |
| BslFI | GGGAC | 7 cut(s) | 1114, 2585, 2818, 3066, 3736, 4020, 4747 |
| BsmBI | CGTCTC | 4 cut(s) | 395, 1130, 1247, 5250 |
| BsmFI | GGGAC | 7 cut(s) | 1114, 2585, 2818, 3066, 3736, 4020, 4747 |
| BsmI | GAATGC | 2 cut(s) | 4832, 5348 |
| Bso31I | GGTCTC | 4 cut(s) | 767, 1892, 4435, 5489 |
| BsoBI | CYCGRG | 2 cut(s) | 2211, 5008 |
| Bsp119I | TTCGAA | 1 cut(s) | 3061 |
| Bsp120I | GGGCCC | 1 cut(s) | 207 |
| Bsp1286I | GDGCHC | 9 cut(s) | 161, 194, 202, 211, 440, 1471, 3007, 3440, 5372 |
| Bsp1407I | TGTACA | 2 cut(s) | 1746, 3364 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 2046, 3999, 4425 |
| Bsp19I | CCATGG | 2 cut(s) | 777, 2995 |
| BspHI | TCATGA | 2 cut(s) | 946, 5158 |
| BspMAI | CTGCAG | 2 cut(s) | 3697, 5149 |
| BspMI | ACCTGC | 3 cut(s) | 1796, 3478, 3640 |
| BspOI | GCTAGC | 1 cut(s) | 3953 |
| BspQI | GCTCTTC | 1 cut(s) | 1177 |
| BspT104I | TTCGAA | 1 cut(s) | 3061 |
| BspT107I | GGYRCC | 2 cut(s) | 1425, 2128 |
| BspTNI | GGTCTC | 4 cut(s) | 767, 1892, 4435, 5489 |
| BsrDI | GCAATG | 3 cut(s) | 748, 4921, 5302 |
| BsrFI | RCCGGY | 2 cut(s) | 2423, 2743 |
| BsrGI | TGTACA | 2 cut(s) | 1746, 3364 |
| BssAI | RCCGGY | 2 cut(s) | 2423, 2743 |
| BssNI | GRCGYC | 1 cut(s) | 1240 |
| BssSI | CACGAG | 1 cut(s) | 1470 |
| BssT1I | CCWWGG | 5 cut(s) | 482, 777, 2995, 4058, 4549 |
| Bst2BI | CACGAG | 1 cut(s) | 1470 |
| BstACI | GRCGYC | 1 cut(s) | 1240 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2000, 2867 |
| BstAUI | TGTACA | 2 cut(s) | 1746, 3364 |
| BstBI | TTCGAA | 1 cut(s) | 3061 |
| BstDSI | CCRYGG | 2 cut(s) | 777, 2995 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1899, 1929, 2473 |
| BstH2I | RGCGCY | 2 cut(s) | 2053, 3459 |
| BstHHI | GCGC | 5 cut(s) | 186, 1975, 2052, 3458, 4832 |
| BstMCI | CGRYCG | 1 cut(s) | 41 |
| BstNSI | RCATGY | 5 cut(s) | 788, 2595, 3467, 5073, 5301 |
| BstSFI | CTRYAG | 4 cut(s) | 3165, 3693, 4894, 5145 |
| BstSLI | GKGCMC | 4 cut(s) | 211, 1471, 3007, 3440 |
| BstV2I | GAAGAC | 3 cut(s) | 1802, 3429, 4359 |
| BstX2I | RGATCY | 8 cut(s) | 2381, 2431, 3086, 3547, 4290, 4799, 5185, 5458 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4781 |
| BstYI | RGATCY | 8 cut(s) | 2381, 2431, 3086, 3547, 4290, 4799, 5185, 5458 |
| BsuI | GTATCC | 1 cut(s) | 1932 |
| BtgI | CCRYGG | 2 cut(s) | 777, 2995 |
| BtsI | GCAGTG | 2 cut(s) | 2309, 2565 |
| BveI | ACCTGC | 3 cut(s) | 1796, 3478, 3640 |
| CaiI | CAGNNNCTG | 6 cut(s) | 905, 1181, 2378, 2574, 3979, 5180 |
| CciI | TCATGA | 2 cut(s) | 946, 5158 |
| CfoI | GCGC | 5 cut(s) | 186, 1975, 2052, 3458, 4832 |
| Cfr10I | RCCGGY | 2 cut(s) | 2423, 2743 |
| Csp6I | GTAC | 9 cut(s) | 1355, 1747, 2448, 3365, 3554, 3795, 4503, 4863, 4905 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1445, 1480 |
| CviQI | GTAC | 9 cut(s) | 1355, 1747, 2448, 3365, 3554, 3795, 4503, 4863, 4905 |
| DraI | TTTAAA | 1 cut(s) | 4147 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3607 |
| EaeI | YGGCCR | 5 cut(s) | 969, 2363, 3091, 4070, 5282 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3607 |
| EciI | GGCGGA | 3 cut(s) | 268, 1648, 2589 |
| Ecl136II | GAGCTC | 2 cut(s) | 159, 192 |
| Eco130I | CCWWGG | 5 cut(s) | 482, 777, 2995, 4058, 4549 |
| Eco147I | AGGCCT | 2 cut(s) | 481, 4179 |
| Eco24I | GRGCYC | 4 cut(s) | 161, 194, 202, 211 |
| Eco31I | GGTCTC | 4 cut(s) | 767, 1892, 4435, 5489 |
| Eco32I | GATATC | 4 cut(s) | 2845, 3971, 3986, 4313 |
| Eco47I | GGWCC | 7 cut(s) | 1250, 1288, 2832, 3396, 3875, 4034, 4055 |
| Eco47III | AGCGCT | 1 cut(s) | 3457 |
| Eco53kI | GAGCTC | 2 cut(s) | 159, 192 |
| Eco57I | CTGAAG | 3 cut(s) | 1158, 2837, 5298 |
| Eco88I | CYCGRG | 2 cut(s) | 2211, 5008 |
| EcoICRI | GAGCTC | 2 cut(s) | 159, 192 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1899, 1929, 2473 |
| EcoO109I | RGGNCCY | 5 cut(s) | 44, 208, 1250, 3875, 4034 |
| EcoRV | GATATC | 4 cut(s) | 2845, 3971, 3986, 4313 |
| EcoT14I | CCWWGG | 5 cut(s) | 482, 777, 2995, 4058, 4549 |
| EcoT38I | GRGCYC | 4 cut(s) | 161, 194, 202, 211 |
| ErhI | CCWWGG | 5 cut(s) | 482, 777, 2995, 4058, 4549 |
| Esp3I | CGTCTC | 4 cut(s) | 395, 1130, 1247, 5250 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 13, 45, 564, 596, 4042, 4074 |
| FaqI | GGGAC | 7 cut(s) | 1114, 2585, 2818, 3066, 3736, 4020, 4747 |
| FauI | CCCGC | 5 cut(s) | 198, 355, 1085, 1403, 2407 |
| FauNDI | CATATG | 2 cut(s) | 1202, 5454 |
| FbaI | TGATCA | 5 cut(s) | 567, 1492, 1522, 3681, 4453 |
| FblI | GTMKAC | 3 cut(s) | 1075, 4215, 4630 |
| FriOI | GRGCYC | 4 cut(s) | 161, 194, 202, 211 |
| FspAI | RTGCGCAY | 1 cut(s) | 1974 |
| FspI | TGCGCA | 1 cut(s) | 1974 |
| GlaI | GCGC | 5 cut(s) | 185, 1974, 2051, 3457, 4831 |
| GsaI | CCCAGC | 1 cut(s) | 4372 |
| GsuI | CTGGAG | 5 cut(s) | 178, 197, 4120, 4431, 5241 |
| HaeII | RGCGCY | 2 cut(s) | 2053, 3459 |
| HapII | CCGG | 8 cut(s) | 140, 162, 187, 320, 1951, 2137, 2424, 2744 |
| HhaI | GCGC | 5 cut(s) | 186, 1975, 2052, 3458, 4832 |
| Hin1I | GRCGYC | 1 cut(s) | 1240 |
| Hin6I | GCGC | 5 cut(s) | 184, 1973, 2050, 3456, 4830 |
| HinP1I | GCGC | 5 cut(s) | 184, 1973, 2050, 3456, 4830 |
| HincII | GTYRAC | 2 cut(s) | 2178, 4582 |
| HindII | GTYRAC | 2 cut(s) | 2178, 4582 |
| HindIII | AAGCTT | 5 cut(s) | 389, 974, 2520, 2888, 3940 |
| HpaII | CCGG | 8 cut(s) | 140, 162, 187, 320, 1951, 2137, 2424, 2744 |
| Hpy99I | CGWCG | 2 cut(s) | 4469, 4670 |
| HpyCH4IV | ACGT | 4 cut(s) | 1240, 1699, 2034, 3749 |
| HpySE526I | ACGT | 4 cut(s) | 1240, 1699, 2034, 3749 |
| Hsp92I | GRCGYC | 1 cut(s) | 1240 |
| HspAI | GCGC | 5 cut(s) | 184, 1973, 2050, 3456, 4830 |
| KroI | GCCGGC | 1 cut(s) | 2743 |
| KroNI | GCCGGC | 1 cut(s) | 2745 |
| Ksp22I | TGATCA | 5 cut(s) | 567, 1492, 1522, 3681, 4453 |
| LguI | GCTCTTC | 1 cut(s) | 1177 |
| MaeII | ACGT | 4 cut(s) | 1240, 1699, 2034, 3749 |
| MaeIII | GTNAC | 2 cut(s) | 3298, 4139 |
| MfeI | CAATTG | 4 cut(s) | 632, 993, 1419, 4107 |
| MflI | RGATCY | 8 cut(s) | 2381, 2431, 3086, 3547, 4290, 4799, 5185, 5458 |
| MhlI | GDGCHC | 9 cut(s) | 161, 194, 202, 211, 440, 1471, 3007, 3440, 5372 |
| MlsI | TGGCCA | 5 cut(s) | 971, 2365, 3093, 4072, 5284 |
| MluNI | TGGCCA | 5 cut(s) | 971, 2365, 3093, 4072, 5284 |
| MlyI | GAGTC | 6 cut(s) | 1321, 2055, 3503, 3838, 3893, 5042 |
| MmeI | TCCRAC | 6 cut(s) | 308, 889, 1564, 1644, 1785, 2559 |
| Mox20I | TGGCCA | 5 cut(s) | 971, 2365, 3093, 4072, 5284 |
| MroNI | GCCGGC | 1 cut(s) | 2743 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1535 |
| MscI | TGGCCA | 5 cut(s) | 971, 2365, 3093, 4072, 5284 |
| MslI | CAYNNNNRTG | 6 cut(s) | 789, 1387, 2997, 3000, 3409, 4815 |
| Msp20I | TGGCCA | 5 cut(s) | 971, 2365, 3093, 4072, 5284 |
| MspA1I | CMGCKG | 4 cut(s) | 371, 1398, 3848, 5198 |
| MspI | CCGG | 8 cut(s) | 140, 162, 187, 320, 1951, 2137, 2424, 2744 |
| MunI | CAATTG | 4 cut(s) | 632, 993, 1419, 4107 |
| Mva1269I | GAATGC | 2 cut(s) | 4832, 5348 |
| NaeI | GCCGGC | 1 cut(s) | 2745 |
| NciI | CCSGG | 4 cut(s) | 141, 163, 321, 1952 |
| NcoI | CCATGG | 2 cut(s) | 777, 2995 |
| NdeI | CATATG | 2 cut(s) | 1202, 5454 |
| NgoMIV | GCCGGC | 1 cut(s) | 2743 |
| NheI | GCTAGC | 1 cut(s) | 3949 |
| NmeAIII | GCCGAG | 2 cut(s) | 28, 181 |
| NmuCI | GTSAC | 1 cut(s) | 3298 |
| NsbI | TGCGCA | 1 cut(s) | 1974 |
| NspI | RCATGY | 5 cut(s) | 788, 2595, 3467, 5073, 5301 |
| NspV | TTCGAA | 1 cut(s) | 3061 |
| OliI | CACNNNNGTG | 1 cut(s) | 2997 |
| PaeR7I | CTCGAG | 2 cut(s) | 2211, 5008 |
| PagI | TCATGA | 2 cut(s) | 946, 5158 |
| PaqCI | CACCTGC | 1 cut(s) | 3478 |
| PceI | AGGCCT | 2 cut(s) | 481, 4179 |
| PciI | ACATGT | 2 cut(s) | 2591, 5069 |
| PciSI | GCTCTTC | 1 cut(s) | 1177 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1444 |
| PctI | GAATGC | 2 cut(s) | 4832, 5348 |
| PdiI | GCCGGC | 1 cut(s) | 2745 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1535 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1546, 2378, 3676 |
| PfoI | TCCNGGA | 2 cut(s) | 161, 1924 |
| PleI | GAGTC | 6 cut(s) | 1320, 2055, 3502, 3837, 3892, 5041 |
| PpsI | GAGTC | 6 cut(s) | 1320, 2055, 3502, 3837, 3892, 5041 |
| PpuMI | RGGWCCY | 3 cut(s) | 1250, 3875, 4034 |
| PscI | ACATGT | 2 cut(s) | 2591, 5069 |
| PshBI | ATTAAT | 2 cut(s) | 1958, 3218 |
| Psp124BI | GAGCTC | 2 cut(s) | 161, 194 |
| Psp5II | RGGWCCY | 3 cut(s) | 1250, 3875, 4034 |
| PspFI | CCCAGC | 1 cut(s) | 4368 |
| PspOMI | GGGCCC | 1 cut(s) | 207 |
| PspPPI | RGGWCCY | 3 cut(s) | 1250, 3875, 4034 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 804, 836 |
| PstI | CTGCAG | 2 cut(s) | 3697, 5149 |
| PstNI | CAGNNNCTG | 6 cut(s) | 905, 1181, 2378, 2574, 3979, 5180 |
| PsuI | RGATCY | 8 cut(s) | 2381, 2431, 3086, 3547, 4290, 4799, 5185, 5458 |
| PvuII | CAGCTG | 1 cut(s) | 3848 |
| RsaI | GTAC | 9 cut(s) | 1356, 1748, 2449, 3366, 3555, 3796, 4504, 4864, 4906 |
| RsaNI | GTAC | 9 cut(s) | 1355, 1747, 2448, 3365, 3554, 3795, 4503, 4863, 4905 |
| RseI | CAYNNNNRTG | 6 cut(s) | 789, 1387, 2997, 3000, 3409, 4815 |
| SacI | GAGCTC | 2 cut(s) | 161, 194 |
| SapI | GCTCTTC | 1 cut(s) | 1177 |
| ScaI | AGTACT | 1 cut(s) | 3555 |
| SchI | GAGTC | 6 cut(s) | 1321, 2055, 3503, 3838, 3893, 5042 |
| SduI | GDGCHC | 9 cut(s) | 161, 194, 202, 211, 440, 1471, 3007, 3440, 5372 |
| SfcI | CTRYAG | 4 cut(s) | 3165, 3693, 4894, 5145 |
| Sfr274I | CTCGAG | 2 cut(s) | 2211, 5008 |
| SfuI | TTCGAA | 1 cut(s) | 3061 |
| SinI | GGWCC | 7 cut(s) | 1250, 1288, 2832, 3396, 3875, 4034, 4055 |
| SlaI | CTCGAG | 2 cut(s) | 2211, 5008 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 789, 1387, 2997, 3000, 3409, 4815 |
| SmlI | CTYRAG | 4 cut(s) | 2211, 2451, 4259, 5008 |
| SmoI | CTYRAG | 4 cut(s) | 2211, 2451, 4259, 5008 |
| SseBI | AGGCCT | 2 cut(s) | 481, 4179 |
| SspI | AATATT | 4 cut(s) | 276, 1559, 2103, 3066 |
| SstI | GAGCTC | 2 cut(s) | 161, 194 |
| StuI | AGGCCT | 2 cut(s) | 481, 4179 |
| StyI | CCWWGG | 5 cut(s) | 482, 777, 2995, 4058, 4549 |
| TaiI | ACGT | 4 cut(s) | 1243, 1702, 2037, 3752 |
| TaqII | GACCGA | 1 cut(s) | 27 |
| TatI | WGTACW | 4 cut(s) | 1746, 2447, 3364, 3553 |
| TauI | GCSGC | 2 cut(s) | 253, 2278 |
| TseFI | GTSAC | 1 cut(s) | 3298 |
| Tsp45I | GTSAC | 1 cut(s) | 3298 |
| TspGWI | ACGGA | 5 cut(s) | 2002, 2667, 4264, 4725, 5274 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1546, 2378, 3676 |
| VneI | GTGCAC | 2 cut(s) | 1467, 3003 |
| VpaK11BI | GGWCC | 7 cut(s) | 1250, 1288, 2832, 3396, 3875, 4034, 4055 |
| VspI | ATTAAT | 2 cut(s) | 1958, 3218 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1899, 1929, 2473 |
| XapI | RAATTY | 8 cut(s) | 712, 1502, 2479, 4159, 4638, 4874, 5103, 5489 |
| XbaI | TCTAGA | 2 cut(s) | 3832, 5074 |
| XceI | RCATGY | 5 cut(s) | 788, 2595, 3467, 5073, 5301 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2392, 5236 |
| XhoI | CTCGAG | 2 cut(s) | 2211, 5008 |
| XmaJI | CCTAGG | 1 cut(s) | 482 |
| XmiI | GTMKAC | 3 cut(s) | 1075, 4215, 4630 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1535 |
| ZraI | GACGTC | 1 cut(s) | 1241 |
| ZrmI | AGTACT | 1 cut(s) | 3555 |