Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005721

Physical Location & Seq

Genomic Coordinates Forward (+)

68125173 .. 68135684

Gene Structure 10512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5484 bp

ATGCGATCATCGCCGAGTGGTGGTAAACAGTGGGGGCAGAGGAATCGGAAGAAGCACAAGAGGCTTGATGCTATTAGTGAAACCGTGTATAAGAGGAATCATCTTCAGGCTAATGATGGGGCGGGGCCGGGTCCCGGGAGCGGTGAATCGGAGCTTCGGAGGAGCTCCAGGGCACGCCGGGCCCCCGTTGTGCTTGATTTGTCCCCCGGGCCGCCGAAGAAGAGGAGGAGGGTTGGTAAGAATGGGAGATTGAGTGGGGGGAAGAATGTGAAGGAGGAGGTGGATGAGGAGGAGGAGGAGGAGGAGATGGAGGGAGGGTGGAAGTCGAGGTTGAGATCGAGGAGGAGGCATTCGGGGTTTGTGAAGGGGAAGAGGAAGCTTTTTGAACATGTGAGTGGAGGTAGTAGTGGAGGGAAGGTAGTGGGGAGTGAGCTGGATGATGAGAATGAGGAAGGGTTGGAAGGTGGGAGGCCGAAGGTTGTGAAGTCGAAGAGACCAGGGAGGGTTAGAGCAACGCATGGTTCGGAGCATGAAGAGAATGAGTTGCTTGAAGTTAAGGAGGAAGTTGTGGGGGAAGAAGAGGAGGTGATGAGGGAGGACAGGGATAATTTAATGCAGTTGGATTGCGAAGAGGATGGTGGAATTGAGAGGGAAACTGTGGAAGGTGATTCCACAAAGATAATTGAGGCGGTGGGGGATTTACAGTTGGAGGAGGAGTGCACTGGCAATGAGAAAGTGGAAGCTGCTGAAACGGCAGATGTTGGGGAAATGATAGAACAAGTTGATGAACTGGTGGAGCAATCAGTTGATGTGATTGAAGAAGAAAAAGATGACGTGATTGAAGAAGAAAAAGATGATAAACAGATGGAACAAGAGCAAGTACTGTGTGTTGTTGAAGAAGAAGATCAAAGTGAGGCCACAGAAGCTGTTGGAGTCCCGGAAATGAAGCAGAAGTTGAAGGAAGATGGAAAGTCACGGATTAAGGAGGGTAGACGGTGTGGTTTGTGTGGGGGAGGGACTGACGGTATGCCTCCAAAAATATTAGCTCAGGATACAGTTGACATTGAGAATGAAGCGTATAGTGGGTCTTCAGCCTCTGAGAAATTTGACTATAACATATGGGATGGTTTTGGTGATGAACCTGGATGGCTTGGACGTCTCTTGGGTCCAATAAATGATCGTTATGGTATTGCTGGAACATGGGTTCATCAACACTGTGCTGTATGGAGTCCAGAGGTTTACTTTGCTGGTGTAGGATGCTTAAAAAATATAAGGGCCGCTCTGTGCAGAGGGAGAGCGTTAAAATGCACCCGCTGTGGGAGGCCGGGAGCAACTATTGGATGCCGTGTTGATCGGTGTTCAAGAACTTACCACTTGCCTTGTGCACGAGCTATGAATTGCGTATTTGATCATCGCAAGTTTCTTATTGCCTGTACTGGTCATAGGAAACTCTTCCAGCCTCTTGGTTATCAGTACTTAGCCCGCAAAAAGAAATTGAAGGTTAAGAAAATGAAGTTTGAAATCAGAAAGCTATCAAATGATGCTTTGCGAAAGGATATTGAGGCAGAAGAAAAGTGGTTGGAGAATTGTGGCGATGATGAAGAGTTTTTGAAACGTGAAAGCAAAAGGCTACATCGAGATTTGGTGAGAATTGCACCTGTGTACATTGGAGGCTCCGACTCTGAGAGTGGCAAACTGTTTCAGGGTTGGGAATCTGTTGCAGGTCTTCAAAATGTCATTAGATGCATGAAGGAAGTTGTCATATTACCTCTTCTATATCCAGAGTTCTTTGATAGTATTAGCCTCACACCTCCTAGAGGTGTTCTATTGCATGGGTATCCTGGAACAGGTAAAACTCTTGTTGTGCGGGCATTAATAGGTGCATGTGCACGTGGTGATAGACGAATAGCATATTTTGCTCGTAAAGGTGCTGATTGTTTAGGAAAATATGTTGGTGATGCTGAGCGCCAGCTAAGACTCTTGTTTCAGGTTGCTGAGAGATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGGTTGGCACCTTCCAGAACTAGGCAACAAGATCAGACACATAGTTCAGTTGTGTCAACACTGCTTGCTTTAATGGATGGTTTGAAATCTCGAGGTTCTGTTGTAGTGATAGGTGCTACAAATCGTCCTGATGCCGTTGATCCAGCACTAAGGCGGCCTGGAAGATTTGATAGGGAAATCTATTTTCCACTACCGTCAGAAGAGGACAGAGCTTCCATTCTTTCTGTTCATACTCAAAAATGGCCCAAACCAGTCAGTGGATCTGTGCTTAAGTCGATTGCAAGAGGAACTGCTGGATTTGCTGGTGCAGATCTGCAGGCACTTTGCACTCAAGCAGCCATAATTTCTTTGAAAAGGAATTTCCCTTTGCAAGAAGTTTTGTCTGCTGCTGGAAAGAAAGATTCTGAGTCCAAACGCCTCCCTCTACCTGCCTTTGTAGTGGAGGACAGGGATTGGTTGGAGGCTCTGACGTGTTCTCCACCTCCCTGCTCTCGTAGGGAAGTAGGAATAGCTGCTAATGAAGTAGTATGCTCTCCTCTTCCAACCCACCTTATCCCATGTCTTCTACAACCATTATCTACCATGCTTGTATCCCTTTATCTTGATGAACGGCTCTGGTTGCCAACTCCTCTGAGAAGAGCTGCAACAATGATTGAAAGTGTGGTGGTTTCTGCCTTGAATAGGAAAAATATGCTCAGTGATCACTGGTGGTCCCATATTGATGTTTTACTTCAGGAAGCAGATGTTGCAAAGGACATAGAGAGAAAGCTTTTGCATGCTGGAATCTTACATGGAGATACTGCTCTTGCTGATTCTGATGTTTGCAATGATGATGTGGATGACGGAATTTTGAATTTTGAGCCTTCTGTTAAACACCATGGTGGTACTCACCCAAGTTTGTTGCAAAACACATTAGTTGCCTCAACGTACAAACCGGGATTTCGGATATTGATTGCTGGAAATCCCAGATCTGGCCAAAGGCATCTTGCTTCCTGCCTTCTTCACTGTTTTGTTGGGAATGTAGAAATCCAGAAGGTTGATTTGGCTACAGTTTTGCTAGAAGGACACGGAGATATGGCGCAAGGGATCACACAAATATTAAAAATGTGCCAGCATGGGGTCGTGTATAGTTTTCATGCCAAGAATCGATTTGTGATGCAGATGGAGACACCTAATCAAGTAACAGAAGACAGTGATGCAGATTCATCAAACCATCAATGTCCTGAAAATGAAAAGCATCAACATCCTGAGAATGAAAAGTCATATTTTGTGCATGGTCTGGAGGAAAGTGTGTCCTTACCACAGCAATGCAAATCAGAAGAAATGTTAGAGTGCCAAGATGATGTTGCTCAGAGTGCTTCATATGCTTGGAACTTGTTTGTGGAGCAGGTGGAGTCTCTAAGTGTCTCTGCATCCTTGATGATTCTGGCTACATCAGAAGTTCCATGTCCAGTGCTTCCAGTTAGAATGAGGCAGTTCTTTAAGAGTGACATTTTAAATGGCCATCGGTCAGTTCCTGTGAAGCATACAGTTCCCAGGTTTTCTGTGCAGGTTGATGGAAATTTCAACCACGATCTGGTGATCAATCTATCTTCAGCAGAGTTATCAAGGGATCTCGTTCAACAGATTGTTCTGTTAGTTCATCAAACTTCTCACATTCATACAACTTCATGCAAGGAGAGAGACTTTCATGGTATAAATGTTCAGTCCAAGATGGTTGATCACAGTGCAGATCATGGATCAACTGATGCAAACAACAATTTAACTCTACCTCCTGTTGAGTCTCTTCTTAAAGCTTCTGCACCACCTAACAATATAACTGGAAATGGGAAATCAAGCCTTCTGCTAGCAATATCTTCATTTGGCTATCAGATACTGCGATATCCTCATTTTGCTGAACTTTGTTGGTTCACTTCAAAACTTAAAGAAGGTCCTTCTGCAGACATAAGTGGACCTTGGAAGGGTTGGCCATTCAATTCCTGTATAGTTCGTCCTAACAACTCGCTAGAAATGGTAGCTGTGGCAAAGAATATTAAAAGCAAAGAAAACTTGGGCCTAGTTAGAGGCCTGATTGCTGTTGGTTTATTGGCATATAGAGGTCTCTACACATCTCTCAGAGAAGTCTCTTCTGAGGTACGGAAGGTTCTTGAGATTCTAGTTGCGCAGATCAATGCAAAAGTTCAAGCCGGGAAAGATAGATATCAATATGTTCGCCTTTTGTCGCAAGTGGCCTATCTGGAAGATGTGGTCAATAGCTGGGCATACACCTTGCAGAGTTTAGAGCAGGATGCTCCATTGGCAGATGCTAAGCTTACCGCTCCGAGACTTCCAGACGATAACCATATGGATGATCAAGTTCAAAGCGAGGATTCCAAGCCAAAGGTTACAAGCAAATGCTCCAATGAGCACGAAGTACTGGAAATTGTCCCTGAAAGGTTTGATGCTGAAAAAGTTGTCAGTGTTGACGTGAATGAACAAGTTGCTGATTTGGGTTGTTCTGAGGTTAGACTTGCAAGTTTAGATTGTTCTGGACAGAAGATTGTCCCATTTGATTCTACCCTGGATAATTGTCTTAAAGATTCCGATGAAGTTTTGAATGACCAGAATGGGACAAACCCTAAACCCCACGAGTCAGAAAATGACAAACACCATACAGTTGTTGCAGGAGATTCTGAATCTTTGAAACGTCCAAATGGATTTGAATGCACTGAATCTGTTGCTATTCCCAAGGATAGTCCGACTTCTGATATATTTGGCAGCATTAAGCTCTCTAGTTCTTTGACCAGTTACAACAACCTTAATGGTTTGTCCTTGACAGAGGCTGGTAGTAGACATAATGATGGTAAGACTGATGCTGATGAGGTTACTGCAGACGCCAACTTCCCAAGCGCCACCAGTAATACCAATCTGCCTGAGTGCATAGATAAGCGTGATGCAAACTTCTCAAGTAAAACCAATGCTGATGTGCATAATGTTGATGTCAACTTCCCTCCCAAAATCAGTCCCTCTACGAAGTCTGAGTTTGTATGTGTATATCATTGTTGCTCTGAATGCCTAGATACCCTCCACAGTTTGACACAGAAAATTCTCATCGAGGAGTGGCGATCAAGTGGGAGCCAATGGACAGTGGAGGATGTTCATGATATTGTGGCATCACTATCTGTGGATCTTCTTTCAGCGGTTAGAAGAATTCATGTTTCCGGAGGTTTCAGCAATTCATTTGATGATAAAAGGAGACACAGAAATACTGAAACATATGAGTGGCCGGAATCAGGAACATGTGATTGCAATATCTCAGAAAATAAGATTCTTTCACCTGCTGAATGTAGATGCCACACCAGCAGGGAGAGCTTTACTCAAAAGGCAAATGCTTCCGCAAATACTCATCTCAGGCCACGTTTTACCGAAGTACCTTTTGAAGTTGTGACTGTCCCTGGGAGGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

1827

Amino Acids

202.55

Weight (kDa)

5.65

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HC5HC2H_2	PF13832	399 - 473	5.8e-08	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	403 - 481	1.9e-10	PHD-like zinc-binding domain
AAA	PF00004	608 - 743	1.3e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	769 - 801	5.5e-08	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15120 AT3G15120
fragaria_vesca	FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240 FvH4_3g19240
malus_domestica	MD11G1256000.v1.1
prunus_persica	Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1 Prupe.4G173800_v2.0.a1
pyrus_communis	pycom11g22640
rosa_chinensis	RchiOBHm_Chr5g0032311
rosa_laevigata	RLG00000033384
rosa_multiflora	Rmu_co8438997.1_g000001 Rmu_sc0002290.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048110
rosa_rugosa	Rorug05G0130600 Rorug05G0130700
rosa_samantha	Rh5AG224200 Rh5BG225000 Rh5CG250400 Rh5DG229800
rosa_wichuraiana	Rw5G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	3415, 5362
AatII	GACGTC	1 cut(s)	1159
Acc16I	TGCGCA	1 cut(s)	4200
Acc36I	ACCTGC	5 cut(s)	1712, 2473, 3415, 3577, 5362
AccB1I	GGYRCC	1 cut(s)	2044
AccB7I	CCANNNNNTGG	2 cut(s)	2294, 3613
AccBSI	CCGCTC	3 cut(s)	141, 1280, 4355
AccI	GTMKAC	2 cut(s)	991, 4867
AccIII	TCCGGA	1 cut(s)	5237
AclWI	GGATC	6 cut(s)	2171, 2305, 3131, 3657, 3784, 5211
AcoI	YGGCCR	4 cut(s)	3010, 3538, 4004, 5300
AcsI	RAATTY	7 cut(s)	1103, 2395, 2883, 2890, 3598, 5121, 5226
AcuI	CTGAAG	4 cut(s)	89, 1074, 2753, 3615
AcvI	CACGTG	1 cut(s)	1892
AcyI	GRCGYC	2 cut(s)	1156, 4911
AdeI	CACNNNGTG	1 cut(s)	1895
AfaI	GTAC	9 cut(s)	882, 1435, 1475, 1664, 2923, 2966, 4173, 4452, 5448
AflII	CTTAAG	1 cut(s)	2306
AflIII	ACRYGT	3 cut(s)	388, 2507, 5315
AjiI	CACGTC	3 cut(s)	835, 2508, 4504
AjnI	CCWGG	8 cut(s)	167, 496, 1141, 1840, 2194, 3572, 4596, 5470
AjuI	GAANNNNNNNTTGG	2 cut(s)	3062, 3094
AleI	CACNNNNGTG	1 cut(s)	2916
AloI	GAACNNNNNNTCC	2 cut(s)	1188, 1220
Alw21I	GWGCWC	5 cut(s)	167, 722, 1387, 1891, 4446
Alw44I	GTGCAC	3 cut(s)	718, 1383, 1887
AlwI	GGATC	6 cut(s)	2171, 2305, 3131, 3657, 3784, 5211
AlwNI	CAGNNNCTG	5 cut(s)	926, 1097, 3554, 3913, 4859
Ama87I	CYCGRG	3 cut(s)	134, 206, 2127
Aor13HI	TCCGGA	1 cut(s)	5237
ApaI	GGGCCC	1 cut(s)	184
ApaLI	GTGCAC	3 cut(s)	718, 1383, 1887
ApeKI	GCWGC	6 cut(s)	743, 2372, 2423, 2549, 2678, 4794
ApoI	RAATTY	7 cut(s)	1103, 2395, 2883, 2890, 3598, 5121, 5226
AseI	ATTAAT	1 cut(s)	1874
Asp700I	GAANNNNTTC	1 cut(s)	1451
AspLEI	GCGC	4 cut(s)	1968, 3118, 4201, 4928
AsuNHI	GCTAGC	1 cut(s)	3883
AvaI	CYCGRG	3 cut(s)	134, 206, 2127
AvaII	GGWCC	5 cut(s)	131, 1166, 2748, 3968, 3989
BaeGI	GKGCMC	5 cut(s)	175, 184, 722, 1387, 1891
BaeI	ACNNNNGTAYC	2 cut(s)	5430, 5463
BalI	TGGCCA	3 cut(s)	3012, 3540, 4006
BanI	GGYRCC	1 cut(s)	2044
BanII	GRGCYC	2 cut(s)	167, 184
BauI	CACGAG	2 cut(s)	1386, 4664
BbrPI	CACGTG	1 cut(s)	1892
BbsI	GAAGAC	4 cut(s)	1080, 1718, 2591, 3231
Bbv12I	GWGCWC	5 cut(s)	167, 722, 1387, 1891, 4446
BbvI	GCAGC	6 cut(s)	730, 2384, 2410, 2536, 2665, 4806
BceAI	ACGGC	4 cut(s)	768, 1329, 2156, 2663
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	8 cut(s)	169, 498, 1143, 1842, 2196, 3574, 4598, 5472
BciVI	GTATCC	3 cut(s)	1045, 1848, 2638
BclI	TGATCA	5 cut(s)	1408, 2737, 3618, 3757, 4387
BfaI	CTAG	9 cut(s)	1815, 2058, 3095, 3884, 4043, 4094, 4193, 4809, 5093
BfmI	CTRYAG	4 cut(s)	2351, 3084, 3975, 4905
BfoI	RGCGCY	2 cut(s)	1969, 4929
BfrI	CTTAAG	1 cut(s)	2306
BfuAI	ACCTGC	5 cut(s)	1712, 2473, 3415, 3577, 5362
BfuI	GTATCC	3 cut(s)	1045, 1848, 2638
BglII	AGATCT	2 cut(s)	2347, 3005
BisI	GCNGC	9 cut(s)	212, 744, 1278, 2192, 2373, 2424, 2550, 2679, 4795
BlpI	GCTNAGC	2 cut(s)	1962, 4344
BlsI	GCNGC	9 cut(s)	213, 745, 1279, 2193, 2374, 2425, 2551, 2680, 4796
BmcAI	AGTACT	3 cut(s)	882, 1475, 4452
Bme18I	GGWCC	5 cut(s)	131, 1166, 2748, 3968, 3989
BmeT110I	CYCGRG	3 cut(s)	134, 206, 2127
BmgBI	CACGTC	3 cut(s)	835, 2508, 4504
BmtI	GCTAGC	1 cut(s)	3887
BpiI	GAAGAC	4 cut(s)	1080, 1718, 2591, 3231
BplI	GAGNNNNNCTC	2 cut(s)	5377, 5409
BpmI	CTGGAG	2 cut(s)	151, 3338
Bpu10I	CCTNAGC	1 cut(s)	1047
Bpu1102I	GCTNAGC	2 cut(s)	1962, 4344
BpuEI	CTTGAG	3 cut(s)	2352, 4205, 4966
Bsa29I	ATCGAT	1 cut(s)	3184
BsaAI	YACGTR	1 cut(s)	1892
BsaBI	GATNNNNATC	1 cut(s)	4236
BsaHI	GRCGYC	2 cut(s)	1156, 4911
BsaI	GGTCTC	2 cut(s)	487, 4142
BsaWI	WCCGGW	1 cut(s)	5237
Bse3DI	GCAATG	3 cut(s)	733, 2869, 3350
Bse8I	GATNNNNATC	1 cut(s)	4236
BseAI	TCCGGA	1 cut(s)	5237
BseBI	CCWGG	8 cut(s)	169, 498, 1143, 1842, 2196, 3574, 4598, 5472
BseCI	ATCGAT	1 cut(s)	3184
BseJI	GATNNNNATC	1 cut(s)	4236
BseMI	GCAATG	3 cut(s)	733, 2869, 3350
BseSI	GKGCMC	5 cut(s)	175, 184, 722, 1387, 1891
BseXI	GCAGC	6 cut(s)	730, 2384, 2410, 2536, 2665, 4806
BseYI	CCCAGC	1 cut(s)	4293
BsgI	GTGCAG	5 cut(s)	1306, 2364, 3605, 3786, 3822
BshNI	GGYRCC	1 cut(s)	2044
BshVI	ATCGAT	1 cut(s)	3184
BsiHKAI	GWGCWC	5 cut(s)	167, 722, 1387, 1891, 4446
BsiHKCI	CYCGRG	3 cut(s)	134, 206, 2127
BsmBI	CGTCTC	1 cut(s)	1163
BsmI	GAATGC	3 cut(s)	349, 4745, 5093
Bso31I	GGTCTC	2 cut(s)	487, 4142
BsoBI	CYCGRG	3 cut(s)	134, 206, 2127
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	7 cut(s)	167, 175, 184, 722, 1387, 1891, 4446
Bsp13I	TCCGGA	1 cut(s)	5237
Bsp1407I	TGTACA	1 cut(s)	1662
Bsp1720I	GCTNAGC	2 cut(s)	1962, 4344
Bsp19I	CCATGG	1 cut(s)	2914
BspDI	ATCGAT	1 cut(s)	3184
BspEI	TCCGGA	1 cut(s)	5237
BspHI	TCATGA	1 cut(s)	5176
BspMAI	CTGCAG	3 cut(s)	2355, 3979, 4909
BspMI	ACCTGC	5 cut(s)	1712, 2473, 3415, 3577, 5362
BspOI	GCTAGC	1 cut(s)	3887
BspPI	GGATC	6 cut(s)	2171, 2305, 3131, 3657, 3784, 5211
BspQI	GCTCTTC	1 cut(s)	2668
BspT107I	GGYRCC	1 cut(s)	2044
BspTI	CTTAAG	1 cut(s)	2306
BspTNI	GGTCTC	2 cut(s)	487, 4142
BsrBI	CCGCTC	3 cut(s)	141, 1280, 4355
BsrDI	GCAATG	3 cut(s)	733, 2869, 3350
BsrGI	TGTACA	1 cut(s)	1662
BssNI	GRCGYC	2 cut(s)	1156, 4911
BssSI	CACGAG	2 cut(s)	1386, 4664
BssT1I	CCWWGG	3 cut(s)	2914, 3992, 4764
Bst2BI	CACGAG	2 cut(s)	1386, 4664
Bst2UI	CCWGG	8 cut(s)	169, 498, 1143, 1842, 2196, 3574, 4598, 5472
BstACI	GRCGYC	2 cut(s)	1156, 4911
BstAFI	CTTAAG	1 cut(s)	2306
BstAPI	GCANNNNNTGC	2 cut(s)	1916, 2783
BstAUI	TGTACA	1 cut(s)	1662
BstBAI	YACGTR	1 cut(s)	1892
BstC8I	GCNNGC	9 cut(s)	175, 1483, 1869, 1970, 2103, 2355, 2814, 3149, 3885
BstDSI	CCRYGG	1 cut(s)	2914
BstENI	CCTNNNNNAGG	3 cut(s)	1815, 1845, 2716
BstH2I	RGCGCY	2 cut(s)	1969, 4929
BstHHI	GCGC	4 cut(s)	1968, 3118, 4201, 4928
BstNI	CCWGG	8 cut(s)	169, 498, 1143, 1842, 2196, 3574, 4598, 5472
BstNSI	RCATGY	4 cut(s)	392, 1887, 2816, 5319
BstSFI	CTRYAG	4 cut(s)	2351, 3084, 3975, 4905
BstSLI	GKGCMC	5 cut(s)	175, 184, 722, 1387, 1891
BstV1I	GCAGC	6 cut(s)	730, 2384, 2410, 2536, 2665, 4806
BstV2I	GAAGAC	4 cut(s)	1080, 1718, 2591, 3231
BstX2I	RGATCY	5 cut(s)	2297, 2347, 3005, 3649, 5203
BstXI	CCANNNNNNTGG	1 cut(s)	1463
BstYI	RGATCY	5 cut(s)	2297, 2347, 3005, 3649, 5203
Bsu15I	ATCGAT	1 cut(s)	3184
BsuI	GTATCC	3 cut(s)	1045, 1848, 2638
BsuTUI	ATCGAT	1 cut(s)	3184
BtgI	CCRYGG	1 cut(s)	2914
BtgZI	GCGATG	2 cut(s)	1397, 1608
BtrI	CACGTC	3 cut(s)	835, 2508, 4504
BtsI	GCAGTG	1 cut(s)	2096
BveI	ACCTGC	5 cut(s)	1712, 2473, 3415, 3577, 5362
Cac8I	GCNNGC	9 cut(s)	175, 1483, 1869, 1970, 2103, 2355, 2814, 3149, 3885
CaiI	CAGNNNCTG	5 cut(s)	926, 1097, 3554, 3913, 4859
CciI	TCATGA	1 cut(s)	5176
CfoI	GCGC	4 cut(s)	1968, 3118, 4201, 4928
Cfr9I	CCCGGG	2 cut(s)	134, 206
ClaI	ATCGAT	1 cut(s)	3184
CseI	GACGC	1 cut(s)	4919
Csp6I	GTAC	9 cut(s)	881, 1434, 1474, 1663, 2922, 2965, 4172, 4451, 5447
CspCI	CAANNNNNGTGG	2 cut(s)	1361, 1396
CviQI	GTAC	9 cut(s)	881, 1434, 1474, 1663, 2922, 2965, 4172, 4451, 5447
DraI	TTTAAA	1 cut(s)	3534
DraIII	CACNNNGTG	1 cut(s)	1895
EaeI	YGGCCR	4 cut(s)	3010, 3538, 4004, 5300
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	3 cut(s)	2914, 3992, 4764
Eco147I	AGGCCT	1 cut(s)	4104
Eco24I	GRGCYC	2 cut(s)	167, 184
Eco31I	GGTCTC	2 cut(s)	487, 4142
Eco32I	GATATC	2 cut(s)	3920, 4238
Eco47I	GGWCC	5 cut(s)	131, 1166, 2748, 3968, 3989
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	4 cut(s)	89, 1074, 2753, 3615
Eco72I	CACGTG	1 cut(s)	1892
Eco88I	CYCGRG	3 cut(s)	134, 206, 2127
EcoICRI	GAGCTC	1 cut(s)	165
EcoNI	CCTNNNNNAGG	3 cut(s)	1815, 1845, 2716
EcoO109I	RGGNCCY	3 cut(s)	131, 181, 3968
EcoRI	GAATTC	1 cut(s)	5226
EcoRII	CCWGG	8 cut(s)	167, 496, 1141, 1840, 2194, 3572, 4596, 5470
EcoRV	GATATC	2 cut(s)	3920, 4238
EcoT14I	CCWWGG	3 cut(s)	2914, 3992, 4764
EcoT22I	ATGCAT	1 cut(s)	1748
EcoT38I	GRGCYC	2 cut(s)	167, 184
ErhI	CCWWGG	3 cut(s)	2914, 3992, 4764
Esp3I	CGTCTC	1 cut(s)	1163
FalI	AAGNNNNNCTT	2 cut(s)	3976, 4008
FauI	CCCGC	4 cut(s)	115, 1319, 1490, 1860
FauNDI	CATATG	4 cut(s)	1118, 3400, 4380, 5293
FbaI	TGATCA	5 cut(s)	1408, 2737, 3618, 3757, 4387
FblI	GTMKAC	2 cut(s)	991, 4867
Fnu4HI	GCNGC	9 cut(s)	212, 744, 1278, 2192, 2373, 2424, 2550, 2679, 4795
FriOI	GRGCYC	2 cut(s)	167, 184
Fsp4HI	GCNGC	9 cut(s)	212, 744, 1278, 2192, 2373, 2424, 2550, 2679, 4795
FspBI	CTAG	9 cut(s)	1815, 2058, 3095, 3884, 4043, 4094, 4193, 4809, 5093
FspI	TGCGCA	1 cut(s)	4200
GlaI	GCGC	4 cut(s)	1967, 3117, 4200, 4927
GluI	GCNGC	9 cut(s)	212, 744, 1278, 2192, 2373, 2424, 2550, 2679, 4795
GsaI	CCCAGC	1 cut(s)	4297
GsuI	CTGGAG	2 cut(s)	151, 3338
HaeII	RGCGCY	2 cut(s)	1969, 4929
HgaI	GACGC	1 cut(s)	4919
HhaI	GCGC	4 cut(s)	1968, 3118, 4201, 4928
Hin1I	GRCGYC	2 cut(s)	1156, 4911
Hin6I	GCGC	4 cut(s)	1966, 3116, 4199, 4926
HinP1I	GCGC	4 cut(s)	1966, 3116, 4199, 4926
HincII	GTYRAC	5 cut(s)	1060, 2006, 2094, 4501, 5020
HindII	GTYRAC	5 cut(s)	1060, 2006, 2094, 4501, 5020
HindIII	AAGCTT	4 cut(s)	377, 2804, 3831, 4346
Hsp92I	GRCGYC	2 cut(s)	1156, 4911
HspAI	GCGC	4 cut(s)	1966, 3116, 4199, 4926
KflI	GGGWCCC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	5237
Ksp22I	TGATCA	5 cut(s)	1408, 2737, 3618, 3757, 4387
LguI	GCTCTTC	1 cut(s)	2668
Lsp1109I	GCAGC	6 cut(s)	730, 2384, 2410, 2536, 2665, 4806
MaeI	CTAG	9 cut(s)	1815, 2058, 3095, 3884, 4043, 4094, 4193, 4809, 5093
MaeIII	GTNAC	7 cut(s)	972, 3217, 3524, 4420, 4823, 4900, 5461
MbiI	CCGCTC	3 cut(s)	141, 1280, 4355
MflI	RGATCY	5 cut(s)	2297, 2347, 3005, 3649, 5203
MhlI	GDGCHC	7 cut(s)	167, 175, 184, 722, 1387, 1891, 4446
MlsI	TGGCCA	3 cut(s)	3012, 3540, 4006
MluNI	TGGCCA	3 cut(s)	3012, 3540, 4006
MlyI	GAGTC	8 cut(s)	942, 1237, 1673, 1971, 2453, 3440, 3827, 4676
MmeI	TCCRAC	9 cut(s)	438, 600, 687, 910, 1560, 1701, 2475, 2603, 4799
Mox20I	TGGCCA	3 cut(s)	3012, 3540, 4006
Mph1103I	ATGCAT	1 cut(s)	1748
MroI	TCCGGA	1 cut(s)	5237
MroXI	GAANNNNTTC	1 cut(s)	1451
MscI	TGGCCA	3 cut(s)	3012, 3540, 4006
MslI	CAYNNNNRTG	7 cut(s)	393, 2757, 2916, 3343, 4383, 4875, 5296
Msp20I	TGGCCA	3 cut(s)	3012, 3540, 4006
MspA1I	CMGCKG	2 cut(s)	1314, 5216
MspCI	CTTAAG	1 cut(s)	2306
Mva1269I	GAATGC	3 cut(s)	349, 4745, 5093
MvaI	CCWGG	8 cut(s)	169, 498, 1143, 1842, 2196, 3574, 4598, 5472
NcoI	CCATGG	1 cut(s)	2914
NdeI	CATATG	4 cut(s)	1118, 3400, 4380, 5293
NheI	GCTAGC	1 cut(s)	3883
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	972, 3524, 5461
NsbI	TGCGCA	1 cut(s)	4200
NsiI	ATGCAT	1 cut(s)	1748
NspI	RCATGY	4 cut(s)	392, 1887, 2816, 5319
OliI	CACNNNNGTG	1 cut(s)	2916
PaeI	GCATGC	1 cut(s)	2816
PaeR7I	CTCGAG	1 cut(s)	2127
PagI	TCATGA	1 cut(s)	5176
PaqCI	CACCTGC	2 cut(s)	3415, 5362
PasI	CCCWGGG	1 cut(s)	5471
PceI	AGGCCT	1 cut(s)	4104
PciI	ACATGT	2 cut(s)	388, 5315
PciSI	GCTCTTC	1 cut(s)	2668
PctI	GAATGC	3 cut(s)	349, 4745, 5093
PdmI	GAANNNNTTC	1 cut(s)	1451
PflMI	CCANNNNNTGG	2 cut(s)	2294, 3613
PfoI	TCCNGGA	2 cut(s)	936, 1840
PkrI	GCNGC	9 cut(s)	213, 745, 1279, 2193, 2374, 2425, 2551, 2680, 4796
PleI	GAGTC	8 cut(s)	941, 1236, 1673, 1971, 2452, 3439, 3826, 4675
PmaCI	CACGTG	1 cut(s)	1892
PmlI	CACGTG	1 cut(s)	1892
PpsI	GAGTC	8 cut(s)	941, 1236, 1673, 1971, 2452, 3439, 3826, 4675
Ppu21I	YACGTR	1 cut(s)	1892
PpuMI	RGGWCCY	2 cut(s)	131, 3968
PscI	ACATGT	2 cut(s)	388, 5315
PshBI	ATTAAT	1 cut(s)	1874
Psp124BI	GAGCTC	1 cut(s)	167
Psp5II	RGGWCCY	2 cut(s)	131, 3968
Psp6I	CCWGG	8 cut(s)	167, 496, 1141, 1840, 2194, 3572, 4596, 5470
PspCI	CACGTG	1 cut(s)	1892
PspFI	CCCAGC	1 cut(s)	4293
PspGI	CCWGG	8 cut(s)	167, 496, 1141, 1840, 2194, 3572, 4596, 5470
PspOMI	GGGCCC	1 cut(s)	180
PspPPI	RGGWCCY	2 cut(s)	131, 3968
PsrI	GAACNNNNNNTAC	2 cut(s)	4164, 4196
PstI	CTGCAG	3 cut(s)	2355, 3979, 4909
PstNI	CAGNNNCTG	5 cut(s)	926, 1097, 3554, 3913, 4859
PsuI	RGATCY	5 cut(s)	2297, 2347, 3005, 3649, 5203
RsaI	GTAC	9 cut(s)	882, 1435, 1475, 1664, 2923, 2966, 4173, 4452, 5448
RsaNI	GTAC	9 cut(s)	881, 1434, 1474, 1663, 2922, 2965, 4172, 4451, 5447
RseI	CAYNNNNRTG	7 cut(s)	393, 2757, 2916, 3343, 4383, 4875, 5296
SacI	GAGCTC	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	2668
SatI	GCNGC	9 cut(s)	212, 744, 1278, 2192, 2373, 2424, 2550, 2679, 4795
ScaI	AGTACT	3 cut(s)	882, 1475, 4452
SchI	GAGTC	8 cut(s)	942, 1237, 1673, 1971, 2453, 3440, 3827, 4676
SduI	GDGCHC	7 cut(s)	167, 175, 184, 722, 1387, 1891, 4446
SfcI	CTRYAG	4 cut(s)	2351, 3084, 3975, 4905
Sfr274I	CTCGAG	1 cut(s)	2127
SinI	GGWCC	5 cut(s)	131, 1166, 2748, 3968, 3989
SlaI	CTCGAG	1 cut(s)	2127
SmaI	CCCGGG	2 cut(s)	136, 208
SmiMI	CAYNNNNRTG	7 cut(s)	393, 2757, 2916, 3343, 4383, 4875, 5296
SmlI	CTYRAG	5 cut(s)	2127, 2306, 2367, 4184, 4981
SmoI	CTYRAG	5 cut(s)	2127, 2306, 2367, 4184, 4981
SphI	GCATGC	1 cut(s)	2816
SseBI	AGGCCT	1 cut(s)	4104
SspI	AATATT	4 cut(s)	1041, 2019, 3135, 4069
SspMI	CTAG	9 cut(s)	1815, 2058, 3095, 3884, 4043, 4094, 4193, 4809, 5093
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	4104
StyI	CCWWGG	3 cut(s)	2914, 3992, 4764
TaqI	TCGA	8 cut(s)	326, 338, 488, 1636, 2128, 2312, 3184, 5130
TaqII	GACCGA	1 cut(s)	3534
TatI	WGTACW	5 cut(s)	880, 1433, 1473, 1662, 4450
TauI	GCSGC	3 cut(s)	214, 1280, 2194
TseFI	GTSAC	3 cut(s)	972, 3524, 5461
TseI	GCWGC	6 cut(s)	743, 2372, 2423, 2549, 2678, 4794
Tsp45I	GTSAC	3 cut(s)	972, 3524, 5461
TspGWI	ACGGA	4 cut(s)	991, 2895, 3120, 4189
TspMI	CCCGGG	2 cut(s)	134, 206
Van91I	CCANNNNNTGG	2 cut(s)	2294, 3613
Vha464I	CTTAAG	1 cut(s)	2306
VneI	GTGCAC	3 cut(s)	718, 1383, 1887
VpaK11BI	GGWCC	5 cut(s)	131, 1166, 2748, 3968, 3989
VspI	ATTAAT	1 cut(s)	1874
XagI	CCTNNNNNAGG	3 cut(s)	1815, 1845, 2716
XapI	RAATTY	7 cut(s)	1103, 2395, 2883, 2890, 3598, 5121, 5226
XceI	RCATGY	4 cut(s)	392, 1887, 2816, 5319
XhoI	CTCGAG	1 cut(s)	2127
XmaI	CCCGGG	2 cut(s)	134, 206
XmiI	GTMKAC	2 cut(s)	991, 4867
XmnI	GAANNNNTTC	1 cut(s)	1451
XspI	CTAG	9 cut(s)	1815, 2058, 3095, 3884, 4043, 4094, 4193, 4809, 5093
ZraI	GACGTC	1 cut(s)	1157
ZrmI	AGTACT	3 cut(s)	882, 1475, 4452
Zsp2I	ATGCAT	1 cut(s)	1748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.