AT3G15150

Zinc-finger of the MIZ type in Nse subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013014
Physical Location & Seq
Reverse (-)
5101844 .. 5104159
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15150.1

Sequence Viewer

Length: 750 bp
ATGGCGTCGGCGTCCTCGTCTGACGGAGTTGCCGGAAGGATTCAGAACGCTTCTTTGGTTCTTGTCTCCGATAACAGTTCCACGCTTGCTGATATCCGCAAAGCTGTGGCAATGATGAAGAACATTGCAGTTCAATTGGAGAAAGAAAATCAAACGGACAAGGTTAAGGACCTTGAAAATTCTGTGGCTGAGTTATTGGATTTGCATAGTGATTGTAATCACCGTTCGACAGCAATTCAATCCGTTGCAAATCGGTACCAACCCGTGGAACAATTAACGGACTTTAAAAAGTTGCTTGATGATGAATTCACAAAGCTCAAGGCTACACCTTCCTCAGTGCCACAAAATGATCATTTGATGCGCCAGTTCAGGGAAGCAGTTTGGAATGTTCATCATGCAGGTGAACCAATGCCTGGTGACGATGATGAGGACATTGTTATGACCAGTACTCAGTGCCCTCTTCTAAACATGACATGTCCCTTGAGCGGGAAGCCTGTCACTGAATTAGCAGATCCAGTTCGCAGTATGGATTGCAGGCACGTCTATGAAAAATCTGTAATCCTGCATTACATAGTCAACAATCCAAATGCGAATTGTCCTGTAGCAGGGTGCCGAGGTAAACTGCAGAATAGCAAAGTGATTTGTGATGCAATGTTGAAGTTTGAAATAGAGGAGATGCGCTCGTTGAACAAACAATCTAATAGGGCTGAAGTGATTGAAGACTTCACAGAAGATGTGGATGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010073 GO:0010075 GO:0010082 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010646 GO:0010647 GO:0010948 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0022622 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0032501 GO:0032502 GO:0032875 GO:0032876 GO:0033554 GO:0036211 GO:0040008 GO:0042127 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045786 GO:0045787 GO:0045931 GO:0045934 GO:0048364 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051239 GO:0051716 GO:0051726 GO:0060249 GO:0060250 GO:0060255 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0090329 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000104 GO:2000112 GO:2000113 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Nse

Protein Analysis

249

Amino Acids

27.72

Weight (kDa)

4.91

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Nse PF11789 144 - 204 1.5e-14 Zinc-finger of the MIZ type in Nse subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15150
fragaria_vesca FvH4_3g19260
malus_domestica MD03G1235300.v1.1 MD11G1255800.v1.1
prunus_persica Prupe.4G174000_v2.0.a1
pyrus_communis pycom03g18180 pycom11g22610
rosa_chinensis RchiOBHm_Chr5g0032331
rosa_laevigata RLG00000033386
rosa_multiflora Rmu_sc0002290.1_g000006
rosa_roxburghii Rroxscaffold_1G00048090
rosa_rugosa Rorug05G0131000 Rorug05G0131100
rosa_samantha Rh5AG224400 Rh5BG225300 Rh5CG250800 Rh5DG230000
rosa_wichuraiana Rw5G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 2 cut(s) 255, 609
AccB7I CCANNNNNTGG 2 cut(s) 265, 413
AccBSI CCGCTC 1 cut(s) 486
AciI CCGC 2 cut(s) 97, 486
AclWI GGATC 1 cut(s) 506
AcsI RAATTY 2 cut(s) 178, 305
AcuI CTGAAG 1 cut(s) 729
AcyI GRCGYC 2 cut(s) 5, 11
AfaI GTAC 2 cut(s) 257, 448
AfiI CCNNNNNNNGG 6 cut(s) 265, 370, 413, 485, 486, 605
AflIII ACRYGT 1 cut(s) 473
AgsI TTSAA 7 cut(s) 134, 176, 239, 658, 665, 688, 719
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 2 cut(s) 104, 316
AluI AGCT 2 cut(s) 104, 316
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 178, 305
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 2 cut(s) 363, 681
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 212, 413, 428
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 458
BanI GGYRCC 2 cut(s) 255, 609
BbsI GAAGAC 1 cut(s) 726
BciT130I CCWGG 1 cut(s) 414
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 70
BfmI CTRYAG 2 cut(s) 600, 623
BfuAI ACCTGC 1 cut(s) 389
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 257, 611
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 348, 637, 666
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 665, 697
BpuEI CTTGAG 2 cut(s) 302, 502
BsaBI GATNNNNATC 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 5, 11
BsaJI CCNNGG 2 cut(s) 264, 613
Bsc4I CCNNNNNNNGG 6 cut(s) 265, 370, 413, 485, 486, 605
Bse1I ACTGG 3 cut(s) 364, 444, 515
Bse3DI GCAATG 3 cut(s) 117, 123, 657
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 264, 613
BseGI GGATG 1 cut(s) 745
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 6 cut(s) 265, 370, 413, 485, 486, 605
BseMI GCAATG 3 cut(s) 117, 123, 657
BseMII CTCAG 3 cut(s) 180, 348, 464
BseNI ACTGG 3 cut(s) 364, 444, 515
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 458
BshNI GGYRCC 2 cut(s) 255, 609
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 6 cut(s) 265, 370, 413, 485, 486, 605
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 349, 511
BspACI CCGC 2 cut(s) 97, 486
BspCNI CTCAG 3 cut(s) 181, 347, 463
BspLI GGNNCC 2 cut(s) 257, 611
BspMAI CTGCAG 1 cut(s) 627
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 2 cut(s) 255, 609
BsrBI CCGCTC 1 cut(s) 486
BsrDI GCAATG 3 cut(s) 117, 123, 657
BsrI ACTGG 3 cut(s) 364, 444, 515
BssECI CCNNGG 2 cut(s) 264, 613
BssMI GATC 2 cut(s) 349, 511
BssNI GRCGYC 2 cut(s) 5, 11
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 77, 224
Bst6I CTCTTC 1 cut(s) 465
BstACI GRCGYC 2 cut(s) 5, 11
BstC8I GCNNGC 2 cut(s) 87, 536
BstDEI CTNAG 3 cut(s) 189, 334, 450
BstDSI CCRYGG 1 cut(s) 264
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 745
BstHHI GCGC 2 cut(s) 363, 681
BstKTI GATC 2 cut(s) 352, 514
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 349, 511
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 2 cut(s) 600, 623
BstSLI GKGCMC 1 cut(s) 458
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 264
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 342, 458, 498
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 87, 536
CfoI GCGC 2 cut(s) 363, 681
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 256, 447
CviAII CATG 3 cut(s) 395, 469, 474
CviJI RGCY 6 cut(s) 104, 188, 316, 323, 493, 707
CviKI_1 RGCY 6 cut(s) 104, 188, 316, 323, 493, 707
CviQI GTAC 2 cut(s) 256, 447
DdeI CTNAG 3 cut(s) 189, 334, 450
DpnI GATC 2 cut(s) 351, 513
DpnII GATC 2 cut(s) 349, 511
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 729
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 412
EcoRV GATATC 1 cut(s) 94
FaeI CATG 3 cut(s) 398, 472, 477
FaiI YATR 8 cut(s) 207, 396, 440, 470, 475, 527, 546, 572
FaqI GGGAC 1 cut(s) 462
FatI CATG 3 cut(s) 394, 468, 473
FauI CCCGC 1 cut(s) 479
FbaI TGATCA 1 cut(s) 349
GlaI GCGC 2 cut(s) 362, 680
HapII CCGG 1 cut(s) 33
HhaI GCGC 2 cut(s) 363, 681
Hin1I GRCGYC 2 cut(s) 5, 11
Hin1II CATG 3 cut(s) 398, 472, 477
Hin6I GCGC 2 cut(s) 361, 679
HinP1I GCGC 2 cut(s) 361, 679
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 33
HphI GGTGA 3 cut(s) 212, 413, 428
Hpy166II GTNNAC 3 cut(s) 404, 577, 620
Hpy188I TCNGA 3 cut(s) 22, 45, 70
Hpy8I GTNNAC 3 cut(s) 404, 577, 620
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 30, 339
HpyCH4III ACNGT 2 cut(s) 77, 224
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 8 cut(s) 128, 205, 248, 398, 534, 565, 625, 650
HpyF3I CTNAG 3 cut(s) 189, 334, 450
HpySE526I ACGT 1 cut(s) 540
Hsp92I GRCGYC 2 cut(s) 5, 11
Hsp92II CATG 3 cut(s) 398, 472, 477
HspAI GCGC 2 cut(s) 361, 679
KpnI GGTACC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 349, 511
LweI GCATC 3 cut(s) 348, 637, 666
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 416, 496
MalI GATC 2 cut(s) 351, 513
MbiI CCGCTC 1 cut(s) 486
MboI GATC 2 cut(s) 349, 511
MboII GAAGA 4 cut(s) 130, 452, 731, 743
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 7 cut(s) 134, 178, 234, 272, 305, 503, 592
MnlI CCTC 6 cut(s) 25, 343, 421, 468, 608, 664
MseI TTAA 3 cut(s) 165, 275, 285
MslI CAYNNNNRTG 3 cut(s) 399, 437, 543
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 414
NdeII GATC 2 cut(s) 349, 511
NlaIII CATG 3 cut(s) 398, 472, 477
NlaIV GGNNCC 2 cut(s) 257, 611
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 2 cut(s) 416, 496
NspI RCATGY 1 cut(s) 477
PaqCI CACCTGC 1 cut(s) 389
PciI ACATGT 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 2 cut(s) 265, 413
PpuMI RGGWCCY 1 cut(s) 169
PscI ACATGT 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 257, 611
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PsrI GAACNNNNNNTAC 2 cut(s) 208, 240
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 2 cut(s) 257, 448
RsaNI GTAC 2 cut(s) 256, 447
RseI CAYNNNNRTG 3 cut(s) 399, 437, 543
SaqAI TTAA 3 cut(s) 165, 275, 285
Sau3AI GATC 2 cut(s) 349, 511
Sau96I GGNCC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 1 cut(s) 458
SetI ASST 8 cut(s) 106, 165, 174, 318, 331, 403, 543, 619
SfaNI GCATC 3 cut(s) 348, 637, 666
SfcI CTRYAG 2 cut(s) 600, 623
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 3 cut(s) 399, 437, 543
SmlI CTYRAG 2 cut(s) 317, 481
SmoI CTYRAG 2 cut(s) 317, 481
Sse9I AATT 7 cut(s) 134, 178, 234, 272, 305, 503, 592
SsiI CCGC 2 cut(s) 97, 486
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 2 cut(s) 77, 224
TaiI ACGT 1 cut(s) 543
TaqI TCGA 1 cut(s) 227
TasI AATT 7 cut(s) 134, 178, 234, 272, 305, 503, 592
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 3 cut(s) 165, 275, 285
Tru9I TTAA 3 cut(s) 165, 275, 285
TscAI CASTG 3 cut(s) 342, 458, 505
TseFI GTSAC 2 cut(s) 416, 496
Tsp45I GTSAC 2 cut(s) 416, 496
TspDTI ATGAA 4 cut(s) 131, 318, 380, 561
TspGWI ACGGA 4 cut(s) 39, 170, 232, 293
TspRI CASTG 3 cut(s) 342, 458, 505
Van91I CCANNNNNTGG 2 cut(s) 265, 413
VpaK11BI GGWCC 1 cut(s) 169
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 2 cut(s) 178, 305
XceI RCATGY 1 cut(s) 477
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.