FvH4_3g19260

E3 SUMO-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013014
Physical Location & Seq
Reverse (-)
12441569 .. 12446895
5327 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19260.t1

Sequence Viewer

Length: 765 bp
ATGGCCTCGACCTCCGCTCGGACACACTCCACCGCGGGTCGGATCCGAACCGCCGCCACCACTCTCTACTCCGACAACCAGTCCCTTCTTGGTGATATTCGAAAATCTTTCAATTTGTTGAAGGATGTTGCTGTTGATTTGGAGAAAGCGAATCAATTTGACAAGGTGAAGGAGATTGAAAATGCTGCTGTTGAACTGCTGGCTACTTGTGATCATTGTATGCTTCTCTCATCAGCAATTCAATCTGTTGGAAATAACTACGAACCTCCTCCAGAGCCTAGTCAGCTTACTGATTTTGAGAAGTTGCTCAAGACTGAGGTTGCAAAGCAAAAGGCTAAATCATCTTCATCTACAGCAAACCAATCTATGATACGTCAATTCCGGGAAGCTGTCTGGAATGTTCATCATGCAGGACAGCCAATGCCAGGTGACGACCAGGATGACATTGTAATGACTAGTACTGATAGCAATATCCGGAATACCACGTGCCCTGTTAGTGGAAAGCATGTCACTGATTTGGAAAATCCAGTTCGCAGTATTGACTGCAAGCATATATATCAACAAAAGGAGATTATGCACTACTTGCGGGCAAAGGGGGGACGTGGACCATGCCCTATTGCAGGTTGTCCTAGGATGTTGCAGGCGGACAAATTTGTTCCTGATCCACTGCTACCACTTGAAATTCAAGAATTGCGTGATATGATGCAGCACCAAACCTCTGATACTAACGCCATAGAGGATTTCACCTTGCTGGATGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0008284 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010073 GO:0010075 GO:0010082 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010646 GO:0010647 GO:0010948 GO:0016740 GO:0016925 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019789 GO:0022622 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032446 GO:0032501 GO:0032502 GO:0032875 GO:0032876 GO:0033554 GO:0036211 GO:0040008 GO:0042127 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045786 GO:0045787 GO:0045931 GO:0045934 GO:0048364 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051239 GO:0051716 GO:0051726 GO:0060249 GO:0060250 GO:0060255 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080036 GO:0080038 GO:0080090 GO:0090329 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000104 GO:2000112 GO:2000113 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Nse

Protein Analysis

255

Amino Acids

28.24

Weight (kDa)

5.38

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Nse PF11789 147 - 209 7.2e-10 Zinc-finger of the MIZ type in Nse subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15150
fragaria_vesca FvH4_3g19260
malus_domestica MD03G1235300.v1.1 MD11G1255800.v1.1
prunus_persica Prupe.4G174000_v2.0.a1
pyrus_communis pycom03g18180 pycom11g22610
rosa_chinensis RchiOBHm_Chr5g0032331
rosa_laevigata RLG00000033386
rosa_multiflora Rmu_sc0002290.1_g000006
rosa_roxburghii Rroxscaffold_1G00048090
rosa_rugosa Rorug05G0131000 Rorug05G0131100
rosa_samantha Rh5AG224400 Rh5BG225300 Rh5CG250800 Rh5DG230000
rosa_wichuraiana Rw5G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 611
AccBSI CCGCTC 1 cut(s) 17
AccII CGCG 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 474
AciI CCGC 7 cut(s) 15, 33, 35, 51, 54, 586, 644
AclWI GGATC 3 cut(s) 37, 50, 656
AcsI RAATTY 2 cut(s) 650, 681
AcvI CACGTG 1 cut(s) 486
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 5 cut(s) 18, 39, 425, 497, 620
AgsI TTSAA 7 cut(s) 112, 121, 179, 194, 242, 680, 686
AhdI GACNNNNNGTC 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 455
AjiI CACGTC 1 cut(s) 602
AjnI CCWGG 2 cut(s) 424, 435
AluBI AGCT 2 cut(s) 286, 389
AluI AGCT 2 cut(s) 286, 389
AlwI GGATC 3 cut(s) 37, 50, 656
Aor13HI TCCGGA 1 cut(s) 474
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 185, 706
ApoI RAATTY 2 cut(s) 650, 681
AspA2I CCTAGG 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 605
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 4 cut(s) 104, 178, 440, 736
AsuII TTCGAA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 605
AvrII CCTAGG 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 491
BamHI GGATCC 1 cut(s) 42
BbrPI CACGTG 1 cut(s) 486
BbvI GCAGC 2 cut(s) 172, 718
BciT130I CCWGG 2 cut(s) 426, 437
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 383
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 3 cut(s) 279, 456, 630
BfmI CTRYAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 611
BisI GCNGC 3 cut(s) 54, 186, 707
BlnI CCTAGG 1 cut(s) 629
BlsI GCNGC 3 cut(s) 55, 187, 708
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 383, 426, 437
Bme18I GGWCC 1 cut(s) 605
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 3 cut(s) 383, 426, 437
BmsI GCATC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 33, 629
BsaWI WCCGGW 1 cut(s) 474
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 39, 425, 497, 620
Bse1I ACTGG 2 cut(s) 79, 527
BseAI TCCGGA 1 cut(s) 474
BseBI CCWGG 2 cut(s) 426, 437
BseDI CCNNGG 2 cut(s) 33, 629
BseGI GGATG 4 cut(s) 130, 445, 639, 760
BseLI CCNNNNNNNGG 5 cut(s) 18, 39, 425, 497, 620
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 79, 527
BseRI GAGGAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 2 cut(s) 172, 718
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 382, 475
BslFI GGGAC 2 cut(s) 67, 612
BslI CCNNNNNNNGG 5 cut(s) 18, 39, 425, 497, 620
BsmFI GGGAC 2 cut(s) 67, 612
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 474
Bsp143I GATC 3 cut(s) 42, 211, 661
BspACI CCGC 7 cut(s) 15, 33, 35, 51, 54, 586, 644
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 474
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 611
BspPI GGATC 3 cut(s) 37, 50, 656
BspT104I TTCGAA 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 17
BsrI ACTGG 2 cut(s) 79, 527
BssECI CCNNGG 2 cut(s) 33, 629
BssMI GATC 3 cut(s) 42, 211, 661
BssT1I CCWWGG 1 cut(s) 629
Bst2UI CCWGG 2 cut(s) 426, 437
BstAPI GCANNNNNTGC 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 4 cut(s) 201, 548, 588, 642
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 4 cut(s) 130, 445, 639, 760
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 3 cut(s) 45, 214, 664
BstMBI GATC 3 cut(s) 42, 211, 661
BstMWI GCNNNNNNNGC 2 cut(s) 283, 583
BstNI CCWGG 2 cut(s) 426, 437
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 3 cut(s) 381, 424, 435
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 491
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 172, 718
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 602
BtsCI GGATG 4 cut(s) 130, 445, 639, 760
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 2 cut(s) 510, 665
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 4 cut(s) 201, 548, 588, 642
Cfr13I GGNCC 1 cut(s) 605
Cfr42I CCGCGG 1 cut(s) 36
Csp6I GTAC 1 cut(s) 459
CviAII CATG 3 cut(s) 407, 506, 609
CviJI RGCY 7 cut(s) 5, 203, 277, 286, 335, 389, 418
CviKI_1 RGCY 7 cut(s) 5, 203, 277, 286, 335, 389, 418
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 1 cut(s) 315
DpnI GATC 3 cut(s) 44, 213, 663
DpnII GATC 3 cut(s) 42, 211, 661
DriI GACNNNNNGTC 1 cut(s) 79
Eam1105I GACNNNNNGTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 629
Eco47I GGWCC 1 cut(s) 605
Eco72I CACGTG 1 cut(s) 486
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 424, 435
EcoT14I CCWWGG 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 629
FaeI CATG 3 cut(s) 410, 509, 612
FaqI GGGAC 2 cut(s) 67, 612
FatI CATG 3 cut(s) 406, 505, 608
FauI CCCGC 2 cut(s) 28, 579
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 54, 186, 707
FokI GGATG 3 cut(s) 137, 452, 646
Fsp4HI GCNGC 3 cut(s) 54, 186, 707
FspBI CTAG 3 cut(s) 279, 456, 630
GluI GCNGC 3 cut(s) 54, 186, 707
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 382, 475
Hin1II CATG 3 cut(s) 410, 509, 612
HinfI GANTC 1 cut(s) 151
HpaII CCGG 2 cut(s) 382, 475
HphI GGTGA 4 cut(s) 104, 178, 440, 736
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 5 cut(s) 21, 42, 47, 73, 721
Hpy188III TCNNGA 6 cut(s) 272, 310, 394, 475, 659, 686
Hpy8I GTNNAC 1 cut(s) 605
HpyAV CCTTC 3 cut(s) 95, 115, 163
HpyCH4IV ACGT 3 cut(s) 373, 485, 601
HpyCH4V TGCA 7 cut(s) 323, 410, 546, 577, 620, 640, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 583
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 3 cut(s) 373, 485, 601
Hsp92II CATG 3 cut(s) 410, 509, 612
Kpn2I TCCGGA 1 cut(s) 474
Ksp22I TGATCA 1 cut(s) 211
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 3 cut(s) 42, 211, 661
Lsp1109I GCAGC 2 cut(s) 172, 718
LweI GCATC 1 cut(s) 693
MaeI CTAG 3 cut(s) 279, 456, 630
MaeII ACGT 3 cut(s) 373, 485, 601
MaeIII GTNAC 2 cut(s) 428, 508
MalI GATC 3 cut(s) 44, 213, 663
MbiI CCGCTC 1 cut(s) 17
MboI GATC 3 cut(s) 42, 211, 661
MboII GAAGA 1 cut(s) 336
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 7 cut(s) 112, 155, 237, 377, 650, 681, 689
MmeI TCCRAC 3 cut(s) 20, 96, 229
MnlI CCTC 7 cut(s) 16, 22, 276, 279, 310, 727, 730
MroI TCCGGA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 382, 475
MspR9I CCNGG 3 cut(s) 383, 426, 437
MvaI CCWGG 2 cut(s) 426, 437
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 283, 583
NciI CCSGG 1 cut(s) 383
NdeII GATC 3 cut(s) 42, 211, 661
NlaIII CATG 3 cut(s) 410, 509, 612
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 428, 508
NspI RCATGY 1 cut(s) 509
NspV TTCGAA 1 cut(s) 100
PfeI GAWTC 1 cut(s) 151
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 3 cut(s) 55, 187, 708
PmaCI CACGTG 1 cut(s) 486
PmlI CACGTG 1 cut(s) 486
Ppu21I YACGTR 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 424, 435
PspCI CACGTG 1 cut(s) 486
PspGI CCWGG 2 cut(s) 424, 435
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 605
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 449
SacII CCGCGG 1 cut(s) 36
SatI GCNGC 3 cut(s) 54, 186, 707
Sau3AI GATC 3 cut(s) 42, 211, 661
Sau96I GGNCC 1 cut(s) 605
ScaI AGTACT 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 383, 426, 437
SduI GDGCHC 1 cut(s) 491
SfaNI GCATC 1 cut(s) 693
SfcI CTRYAG 1 cut(s) 351
Sfr303I CCGCGG 1 cut(s) 36
SfuI TTCGAA 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 36
SinI GGWCC 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 7 cut(s) 112, 155, 237, 377, 650, 681, 689
SsiI CCGC 7 cut(s) 15, 33, 35, 51, 54, 586, 644
SspMI CTAG 3 cut(s) 279, 456, 630
StyD4I CCNGG 3 cut(s) 381, 424, 435
StyI CCWWGG 1 cut(s) 629
TaiI ACGT 3 cut(s) 376, 488, 604
TaqI TCGA 2 cut(s) 8, 100
TasI AATT 7 cut(s) 112, 155, 237, 377, 650, 681, 689
TatI WGTACW 1 cut(s) 458
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 151
TscAI CASTG 2 cut(s) 517, 672
TseFI GTSAC 2 cut(s) 428, 508
TseI GCWGC 2 cut(s) 185, 706
Tsp45I GTSAC 2 cut(s) 428, 508
TspDTI ATGAA 2 cut(s) 336, 392
TspRI CASTG 2 cut(s) 517, 672
VpaK11BI GGWCC 1 cut(s) 605
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 2 cut(s) 650, 681
XceI RCATGY 1 cut(s) 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmaJI CCTAGG 1 cut(s) 629
XspI CTAG 3 cut(s) 279, 456, 630
ZrmI AGTACT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.