pycom11g22610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013014
Physical Location & Seq
Forward (+)
25628452 .. 25629279
828 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22610.3

Sequence Viewer

Length: 372 bp
ATGAACAAGGACGATGCCGTTTCGGACTTTTTGTTCTTTCTACTCAATCTCCCTCCAAAATCTCCCTCCGTCCGTTCTCCTGAACTGTTGCCTCGACTCCCCAGCGAAGAACCCACCAATCAGCCAAGTGGTTCGCCCAAACCCGGTTGTGGAAAAACCCTAAAACCCACGTCCCTCCATGGCCTTGACCTCTCGCACTCATGGCGTCACCGGACGGATCCGAACCGCCACATCCAATCTCCACGAGGACAACCAGTCTCTTATCTCCGTAATGGGAAAGCTTTCAGTTTGATGAAGAAAATTGCAGTTGATTTTGAAAGGGCTAAGCAGTTTGAGAGGGTCACAGGTGAAAGAGCTCGAAAATGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.92

Weight (kDa)

10.23

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15150
fragaria_vesca FvH4_3g19260
malus_domestica MD03G1235300.v1.1 MD11G1255800.v1.1
prunus_persica Prupe.4G174000_v2.0.a1
pyrus_communis pycom03g18180 pycom11g22610
rosa_chinensis RchiOBHm_Chr5g0032331
rosa_laevigata RLG00000033386
rosa_multiflora Rmu_sc0002290.1_g000006
rosa_roxburghii Rroxscaffold_1G00048090
rosa_rugosa Rorug05G0131000 Rorug05G0131100
rosa_samantha Rh5AG224400 Rh5BG225300 Rh5CG250800 Rh5DG230000
rosa_wichuraiana Rw5G020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AclWI GGATC 2 cut(s) 212, 225
AcyI GRCGYC 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 143, 149
AgsI TTSAA 1 cut(s) 317
AhdI GACNNNNNGTC 1 cut(s) 254
AjiI CACGTC 1 cut(s) 171
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 2 cut(s) 281, 356
AluI AGCT 2 cut(s) 281, 356
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 2 cut(s) 212, 225
AoxI GGCC 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 200, 359
BamHI GGATCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 358
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 358
BceAI ACGGC 2 cut(s) 2, 351
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 262
BlpI GCTNAGC 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 144
BmeRI GACNNNNNGTC 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 149
Bse1I ACTGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 143, 149
BseNI ACTGG 1 cut(s) 254
BseYI CCCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 144, 211
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 143, 149
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 1 cut(s) 217
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 2 cut(s) 212, 225
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 205
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 231
CseI GACGC 1 cut(s) 194
CviAII CATG 2 cut(s) 179, 201
CviJI RGCY 5 cut(s) 124, 183, 281, 323, 356
CviKI_1 RGCY 5 cut(s) 124, 183, 281, 323, 356
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DriI GACNNNNNGTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 182, 204
FaiI YATR 2 cut(s) 180, 202
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 178, 200
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 358
GsaI CCCAGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 144, 211
HgaI GACGC 1 cut(s) 194
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 182, 204
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 1 cut(s) 96
HpaII CCGG 2 cut(s) 144, 211
HphI GGTGA 2 cut(s) 200, 359
Hpy188I TCNGA 2 cut(s) 25, 222
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 182, 204
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 6 cut(s) 93, 115, 157, 224, 267, 330
LweI GCATC 1 cut(s) 4
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 206, 340
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 119, 307
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 1 cut(s) 300
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 7 cut(s) 63, 76, 102, 185, 200, 239, 330
MroXI GAANNNNTTC 1 cut(s) 281
MspI CCGG 2 cut(s) 144, 211
MspR9I CCNGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 178
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 182, 204
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 2 cut(s) 206, 340
PcsI WCGNNNNNNNCGW 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 281
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 219
PsuI RGATCY 1 cut(s) 217
SacI GAGCTC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 217
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 358
SetI ASST 5 cut(s) 173, 192, 283, 349, 358
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 226
SstI GAGCTC 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 173
TaqI TCGA 2 cut(s) 94, 358
TasI AATT 1 cut(s) 300
TseFI GTSAC 2 cut(s) 206, 340
Tsp45I GTSAC 2 cut(s) 206, 340
TspDTI ATGAA 2 cut(s) 17, 308
TspGWI ACGGA 4 cut(s) 58, 62, 230, 257
XmnI GAANNNNTTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.