Prupe.4G174000_v2.0.a1

E3 SUMO-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
10296503 .. 10301348
4846 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G174000.1

Sequence Viewer

Length: 1374 bp
ATGGAATTTTTCCACACCCCAAACCATAAACACTCATTTCAGCACAACAAAAAGAGGCTAACCCAAGAGCAAGTCAATCTCCTAGAGAGAAGCTTCACATCCAACAACAAGCTCGAGCCCGAGCGCAAGCTTCTGCTGGCCAAGCAGCTGGGAATCCCACCTCGACAGGTTGCGATTTGGTACCAGAACAAGCGTGCCCGGTGGAAGACTCGGAGCCTTGAGCTTGACTACAATGCAATCCAAGCAAAGCTGGAGACTGCCTTAGCTGAAAAGAGGAGGCTGGAGAAAGATGTTGAGAGGCTTGGAGAGGAGCTGAAGAAGGCTCATGACTTGGTGTTGGTATTGAACCAAACACAAGAATTGCCTGCTCATCCTGTGATTTGCTCAATGTTTAATTCTTCTTCTGCTGAAGAGGGTGTTGGGAGCTCCAGCCTGCAACAACATGAAGATCAAGACAATAATTCTGACCCTTTTTTCCTTTTTCTGTTTCTGGTTTTTAATTTTGATGGCGTTAGAATTTCTTTTTCAATTCATATGCATATGGGTGAGTACCAAGGAAAACTTACCTATAAGAAGGATATTACTGTGTGGCGCTATCCAAGTCAATCATTCATTGTCATAACCCAAAGACCTCCATGGCCTCGACCTCCGCTTCTCGAACTCATGGCGCCACAGGCCGGATCCGAACCGCCACAGCCACTCTCTACGAGGACAACCAGTCTCTTATCTCTAGCTGTGGGTGCAATGAAGGAAATTGCAGTTGATTTGGAGAGAGATAATCAGTTTGAGAGGGTGAAGGAGCTTGAAAATGCTGTTATTGAATTGTTGGGCACTCATGAAGACTGTTCGCATTTTTCATCCACAATTCAATCTGTTGGAGAGAAATACCAACCTGGGCCAGAGCTTACTGATTTTGATCAGTTGTTCAAGAATGAGGTTGCAATGCTCAAGGCTAATTCATTTTCAGATCCACAAAACCATCCTTTGATGCGCCAATTCCGGGAGGCTGTCTGGAATGTTCATCATTCTGGAGAGCCTATGCCAGGTGAAGAGCAGGAGGACATTGTAATGACCAGCAACCAGTGCAATATTCTGAATGTCACTTGCCCATTAAGTGGAAAGCCTATCACTGAACTGCAGCATCCAGTTCGCAGTGTCGTATGCAAGCATGTTTATGACAAAGGGTCAATCATGCATTACTTACGGTCAAAGAACACACGATGCCCTGTTGCAGCTTGCCCTAAGTTATTGCAGGCAGATAAAGTGGTGTGTGATCCGTTGTTACTCGTCGAAATTGATGAATTGCGTGCAATGAAGGAACAGACTGTCATGACTGATGTCATAGAGGATTTCACTGAGCTTGATGAAGAGTGA
Functional Annotation

Protein Analysis

458

Amino Acids

52.44

Weight (kDa)

5.76

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013014)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 2 cut(s) 180, 667
AccB7I CCANNNNNTGG 1 cut(s) 1115
AciI CCGC 2 cut(s) 650, 689
AclWI GGATC 4 cut(s) 675, 688, 962, 1268
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 2 cut(s) 5, 516
AcuI CTGAAG 2 cut(s) 335, 429
AcyI GRCGYC 1 cut(s) 668
AfaI GTAC 2 cut(s) 182, 551
AfiI CCNNNNNNNGG 4 cut(s) 677, 1000, 1043, 1115
AgsI TTSAA 6 cut(s) 346, 528, 806, 821, 869, 928
AhdI GACNNNNNGTC 2 cut(s) 717, 1183
AjnI CCWGG 2 cut(s) 892, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 248, 725
AlwI GGATC 4 cut(s) 675, 688, 962, 1268
Ama87I CYCGRG 2 cut(s) 113, 119
AoxI GGCC 4 cut(s) 138, 638, 675, 896
ApeKI GCWGC 3 cut(s) 145, 1138, 1232
ApoI RAATTY 2 cut(s) 5, 516
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 4 cut(s) 126, 594, 670, 993
AspS9I GGNCC 1 cut(s) 896
AsuC2I CCSGG 2 cut(s) 199, 1001
AsuHPI GGTGA 3 cut(s) 557, 805, 1058
AvaI CYCGRG 2 cut(s) 113, 119
BaeGI GKGCMC 2 cut(s) 199, 833
BalI TGGCCA 1 cut(s) 140
BamHI GGATCC 1 cut(s) 680
BanI GGYRCC 2 cut(s) 180, 667
BanII GRGCYC 2 cut(s) 120, 428
BbsI GAAGAC 2 cut(s) 212, 846
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 3 cut(s) 157, 1150, 1244
BccI CCATC 2 cut(s) 500, 987
BcgI CGANNNNNNTGC 2 cut(s) 1130, 1164
BciT130I CCWGG 2 cut(s) 894, 1044
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 2 cut(s) 199, 1001
BcoDI GTCTC 2 cut(s) 248, 725
BfaI CTAG 2 cut(s) 83, 731
BfmI CTRYAG 1 cut(s) 1136
BfoI RGCGCY 2 cut(s) 595, 671
BisI GCNGC 3 cut(s) 146, 1139, 1233
BlsI GCNGC 3 cut(s) 147, 1140, 1234
Bme1390I CCNGG 4 cut(s) 199, 894, 1001, 1044
BmeRI GACNNNNNGTC 2 cut(s) 717, 1183
BmeT110I CYCGRG 2 cut(s) 113, 119
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 4 cut(s) 182, 215, 669, 682
BmrFI CCNGG 4 cut(s) 199, 894, 1001, 1044
BmsI GCATC 3 cut(s) 978, 1150, 1211
BoxI GACNNNNGTC 1 cut(s) 1337
BpiI GAAGAC 2 cut(s) 212, 846
BpmI CTGGAG 4 cut(s) 272, 302, 412, 1050
Bpu10I CCTNAGC 1 cut(s) 262
BpuEI CTTGAG 2 cut(s) 239, 932
BpuMI CCSGG 2 cut(s) 199, 1001
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 1 cut(s) 668
BsaJI CCNNGG 3 cut(s) 553, 635, 893
Bsc4I CCNNNNNNNGG 4 cut(s) 677, 1000, 1043, 1115
Bse1I ACTGG 3 cut(s) 717, 1081, 1145
Bse3DI GCAATG 3 cut(s) 750, 948, 1317
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 2 cut(s) 894, 1044
BseDI CCNNGG 3 cut(s) 553, 635, 893
BseGI GGATG 5 cut(s) 98, 370, 857, 979, 1141
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 4 cut(s) 677, 1000, 1043, 1115
BseMI GCAATG 3 cut(s) 750, 948, 1317
BseMII CTCAG 1 cut(s) 1347
BseNI ACTGG 3 cut(s) 717, 1081, 1145
BseRI GAGGAG 2 cut(s) 289, 323
BseSI GKGCMC 2 cut(s) 199, 833
BseXI GCAGC 3 cut(s) 157, 1150, 1244
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 4 cut(s) 140, 640, 677, 898
BshNI GGYRCC 2 cut(s) 180, 667
BsiHKAI GWGCWC 1 cut(s) 428
BsiHKCI CYCGRG 2 cut(s) 113, 119
BsiSI CCGG 3 cut(s) 199, 678, 1000
BslI CCNNNNNNNGG 4 cut(s) 677, 1000, 1043, 1115
BsmAI GTCTC 2 cut(s) 248, 725
BsnI GGCC 4 cut(s) 140, 640, 677, 898
BsoBI CYCGRG 2 cut(s) 113, 119
Bsp1286I GDGCHC 4 cut(s) 120, 199, 428, 833
Bsp143I GATC 5 cut(s) 448, 680, 916, 967, 1273
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 2 cut(s) 650, 689
BspANI GGCC 4 cut(s) 140, 640, 677, 898
BspCNI CTCAG 1 cut(s) 1348
BspHI TCATGA 3 cut(s) 325, 835, 1329
BspLI GGNNCC 4 cut(s) 182, 215, 669, 682
BspMAI CTGCAG 1 cut(s) 1140
BspPI GGATC 4 cut(s) 675, 688, 962, 1268
BspQI GCTCTTC 1 cut(s) 1044
BspT107I GGYRCC 2 cut(s) 180, 667
BsrDI GCAATG 3 cut(s) 750, 948, 1317
BsrI ACTGG 3 cut(s) 717, 1081, 1145
BssECI CCNNGG 3 cut(s) 553, 635, 893
BssMI GATC 5 cut(s) 448, 680, 916, 967, 1273
BssNI GRCGYC 1 cut(s) 668
BssT1I CCWWGG 2 cut(s) 553, 635
Bst2UI CCWGG 2 cut(s) 894, 1044
Bst4CI ACNGT 4 cut(s) 586, 845, 1206, 1327
Bst6I CTCTTC 3 cut(s) 405, 1044, 1362
BstACI GRCGYC 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 1083
BstC8I GCNNGC 9 cut(s) 128, 138, 195, 366, 434, 1166, 1237, 1254, 1308
BstDEI CTNAG 3 cut(s) 262, 1242, 1356
BstDSI CCRYGG 1 cut(s) 635
BstENI CCTNNNNNAGG 1 cut(s) 1041
BstF5I GGATG 5 cut(s) 98, 370, 857, 979, 1141
BstH2I RGCGCY 2 cut(s) 595, 671
BstHHI GCGC 4 cut(s) 126, 594, 670, 993
BstKTI GATC 5 cut(s) 451, 683, 919, 970, 1276
BstMAI GTCTC 2 cut(s) 248, 725
BstMBI GATC 5 cut(s) 448, 680, 916, 967, 1273
BstMWI GCNNNNNNNGC 5 cut(s) 142, 242, 674, 740, 1083
BstNI CCWGG 2 cut(s) 894, 1044
BstNSI RCATGY 1 cut(s) 1172
BstPAI GACNNNNGTC 1 cut(s) 1337
BstSCI CCNGG 4 cut(s) 197, 892, 999, 1042
BstSFI CTRYAG 1 cut(s) 1136
BstSLI GKGCMC 2 cut(s) 199, 833
BstV1I GCAGC 3 cut(s) 157, 1150, 1244
BstV2I GAAGAC 2 cut(s) 212, 846
BstX2I RGATCY 2 cut(s) 680, 967
BstXI CCANNNNNNTGG 1 cut(s) 148
BstYI RGATCY 2 cut(s) 680, 967
BsuRI GGCC 4 cut(s) 140, 640, 677, 898
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 5 cut(s) 98, 370, 857, 979, 1141
BtsI GCAGTG 1 cut(s) 1159
BtsIMutI CAGTG 4 cut(s) 1088, 1128, 1159, 1353
Cac8I GCNNGC 9 cut(s) 128, 138, 195, 366, 434, 1166, 1237, 1254, 1308
CciI TCATGA 3 cut(s) 325, 835, 1329
CfoI GCGC 4 cut(s) 126, 594, 670, 993
Cfr13I GGNCC 1 cut(s) 896
Csp6I GTAC 2 cut(s) 181, 550
CviAII CATG 8 cut(s) 326, 443, 636, 664, 836, 1169, 1192, 1330
CviQI GTAC 2 cut(s) 181, 550
DdeI CTNAG 3 cut(s) 262, 1242, 1356
DinI GGCGCC 1 cut(s) 669
DpnI GATC 5 cut(s) 450, 682, 918, 969, 1275
DpnII GATC 5 cut(s) 448, 680, 916, 967, 1273
DriI GACNNNNNGTC 2 cut(s) 717, 1183
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 405, 1044, 1362
Eam1105I GACNNNNNGTC 2 cut(s) 717, 1183
EarI CTCTTC 3 cut(s) 405, 1044, 1362
Ecl136II GAGCTC 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 553, 635
Eco24I GRGCYC 2 cut(s) 120, 428
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 2 cut(s) 335, 429
Eco88I CYCGRG 2 cut(s) 113, 119
EcoICRI GAGCTC 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 1041
EcoRII CCWGG 2 cut(s) 892, 1042
EcoT14I CCWWGG 2 cut(s) 553, 635
EcoT22I ATGCAT 2 cut(s) 540, 1197
EcoT38I GRGCYC 2 cut(s) 120, 428
EgeI GGCGCC 1 cut(s) 669
EheI GGCGCC 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 553, 635
FaeI CATG 8 cut(s) 329, 446, 639, 667, 839, 1172, 1195, 1333
FalI AAGNNNNNCTT 2 cut(s) 546, 578
FatI CATG 8 cut(s) 325, 442, 635, 663, 835, 1168, 1191, 1329
FauNDI CATATG 2 cut(s) 534, 540
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 3 cut(s) 146, 1139, 1233
FokI GGATG 5 cut(s) 85, 357, 844, 966, 1128
FriOI GRGCYC 2 cut(s) 120, 428
Fsp4HI GCNGC 3 cut(s) 146, 1139, 1233
FspBI CTAG 2 cut(s) 83, 731
GlaI GCGC 4 cut(s) 125, 593, 669, 992
GluI GCNGC 3 cut(s) 146, 1139, 1233
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 4 cut(s) 272, 302, 412, 1050
HaeII RGCGCY 2 cut(s) 595, 671
HaeIII GGCC 4 cut(s) 140, 640, 677, 898
HapII CCGG 3 cut(s) 199, 678, 1000
HhaI GCGC 4 cut(s) 126, 594, 670, 993
Hin1I GRCGYC 1 cut(s) 668
Hin1II CATG 8 cut(s) 329, 446, 639, 667, 839, 1172, 1195, 1333
Hin6I GCGC 4 cut(s) 124, 592, 668, 991
HinP1I GCGC 4 cut(s) 124, 592, 668, 991
HindIII AAGCTT 2 cut(s) 91, 128
HinfI GANTC 2 cut(s) 153, 208
HpaII CCGG 3 cut(s) 199, 678, 1000
HphI GGTGA 3 cut(s) 557, 805, 1058
Hpy188I TCNGA 5 cut(s) 213, 466, 685, 967, 1095
Hpy188III TCNNGA 8 cut(s) 326, 452, 656, 836, 928, 1012, 1029, 1330
Hpy99I CGWCG 1 cut(s) 1292
HpyAV CCTTC 5 cut(s) 313, 568, 742, 790, 1309
HpyCH4III ACNGT 4 cut(s) 586, 845, 1206, 1327
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 242, 674, 740, 1083
HpyF3I CTNAG 3 cut(s) 262, 1242, 1356
Hsp92I GRCGYC 1 cut(s) 668
Hsp92II CATG 8 cut(s) 329, 446, 639, 667, 839, 1172, 1195, 1333
HspAI GCGC 4 cut(s) 124, 592, 668, 991
KasI GGCGCC 1 cut(s) 667
KpnI GGTACC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 5 cut(s) 448, 680, 916, 967, 1273
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 5 cut(s) 213, 310, 423, 431, 799
Lsp1109I GCAGC 3 cut(s) 157, 1150, 1244
LweI GCATC 3 cut(s) 978, 1150, 1211
MaeI CTAG 2 cut(s) 83, 731
MaeIII GTNAC 2 cut(s) 1099, 1281
MalI GATC 5 cut(s) 450, 682, 918, 969, 1275
MboI GATC 5 cut(s) 448, 680, 916, 967, 1273
MboII GAAGA 8 cut(s) 217, 328, 390, 393, 422, 458, 851, 1061
MflI RGATCY 2 cut(s) 680, 967
MhlI GDGCHC 4 cut(s) 120, 199, 428, 833
MlsI TGGCCA 1 cut(s) 140
MluNI TGGCCA 1 cut(s) 140
Mly113I GGCGCC 1 cut(s) 668
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 2 cut(s) 126, 856
Mox20I TGGCCA 1 cut(s) 140
Mph1103I ATGCAT 2 cut(s) 540, 1197
MscI TGGCCA 1 cut(s) 140
MseI TTAA 3 cut(s) 393, 498, 1112
MslI CAYNNNNRTG 3 cut(s) 543, 1067, 1173
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 3 cut(s) 199, 678, 1000
MspR9I CCNGG 4 cut(s) 199, 894, 1001, 1044
MvaI CCWGG 2 cut(s) 894, 1044
MwoI GCNNNNNNNGC 5 cut(s) 142, 242, 674, 740, 1083
NarI GGCGCC 1 cut(s) 668
NciI CCSGG 2 cut(s) 199, 1001
NcoI CCATGG 1 cut(s) 635
NdeI CATATG 2 cut(s) 534, 540
NdeII GATC 5 cut(s) 448, 680, 916, 967, 1273
NlaIII CATG 8 cut(s) 329, 446, 639, 667, 839, 1172, 1195, 1333
NlaIV GGNNCC 4 cut(s) 182, 215, 669, 682
NmuCI GTSAC 1 cut(s) 1099
NsiI ATGCAT 2 cut(s) 540, 1197
NspI RCATGY 1 cut(s) 1172
PaeR7I CTCGAG 1 cut(s) 113
PagI TCATGA 3 cut(s) 325, 835, 1329
PciSI GCTCTTC 1 cut(s) 1044
PfeI GAWTC 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 1115
PfoI TCCNGGA 1 cut(s) 999
PkrI GCNGC 3 cut(s) 147, 1140, 1234
PleI GAGTC 1 cut(s) 202
PluTI GGCGCC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 1337
Psp124BI GAGCTC 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 892, 1042
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 892, 1042
PspN4I GGNNCC 4 cut(s) 182, 215, 669, 682
PspPI GGNCC 1 cut(s) 896
PspXI VCTCGAGB 1 cut(s) 113
PstI CTGCAG 1 cut(s) 1140
PsuI RGATCY 2 cut(s) 680, 967
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 2 cut(s) 182, 551
RsaNI GTAC 2 cut(s) 181, 550
RseI CAYNNNNRTG 3 cut(s) 543, 1067, 1173
SacI GAGCTC 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 1044
SaqAI TTAA 3 cut(s) 393, 498, 1112
SatI GCNGC 3 cut(s) 146, 1139, 1233
Sau3AI GATC 5 cut(s) 448, 680, 916, 967, 1273
Sau96I GGNCC 1 cut(s) 896
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 4 cut(s) 199, 894, 1001, 1044
SduI GDGCHC 4 cut(s) 120, 199, 428, 833
SfaNI GCATC 3 cut(s) 978, 1150, 1211
SfcI CTRYAG 1 cut(s) 1136
SfoI GGCGCC 1 cut(s) 669
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 3 cut(s) 543, 1067, 1173
SmlI CTYRAG 3 cut(s) 113, 218, 947
SmoI CTYRAG 3 cut(s) 113, 218, 947
SsiI CCGC 2 cut(s) 650, 689
SspDI GGCGCC 1 cut(s) 667
SspI AATATT 1 cut(s) 1090
SspMI CTAG 2 cut(s) 83, 731
SstI GAGCTC 1 cut(s) 428
StyD4I CCNGG 4 cut(s) 197, 892, 999, 1042
StyI CCWWGG 2 cut(s) 553, 635
TaaI ACNGT 4 cut(s) 586, 845, 1206, 1327
TaqI TCGA 5 cut(s) 114, 163, 643, 657, 1290
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 3 cut(s) 393, 498, 1112
Tru9I TTAA 3 cut(s) 393, 498, 1112
TscAI CASTG 4 cut(s) 1088, 1135, 1159, 1360
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 3 cut(s) 145, 1138, 1232
Tsp45I GTSAC 1 cut(s) 1099
TspGWI ACGGA 1 cut(s) 1266
TspRI CASTG 4 cut(s) 1088, 1135, 1159, 1360
Van91I CCANNNNNTGG 1 cut(s) 1115
XagI CCTNNNNNAGG 1 cut(s) 1041
XapI RAATTY 2 cut(s) 5, 516
XceI RCATGY 1 cut(s) 1172
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 2 cut(s) 83, 731
Zsp2I ATGCAT 2 cut(s) 540, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.