AT3G15410

Plant intracellular Ras-group-related LRR protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003583
Physical Location & Seq
Forward (+)
5203205 .. 5207574
4370 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15410.2

Sequence Viewer

Length: 1755 bp
ATGGATCGGATTCTGAAAGCAGCTCGAACATCTGGTTCGCTGAATCTTTCCAATCGTTCTCTCAAGGATGTACCTACTGAGGTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGGTGGGAGGCTGTTGATTTGCAGAAGTTGATTTTGGCTCATAATGACATTGAGGTTTTAAGAGAAGATCTGAAGAACCTTGCCTGTTTGGTTGTGCTAAATGTCAGTCACAATAAACTCTCTCAACTTCCAGCAGCTATTGGGGAGCTTACTGCGATGAAGTCTTTGGATGTGTCCTTTAACTCAATATCAGAACTTCCTGAGCAAATTGGTTCAGCAATTTCTCTTGTCAAGCTTGACTGTTCAAGCAATCGGCTTAAAGAATTGCCAGATTCTATTGGGAGATGTTTAGACTTATCCGATTTAAAGGCCACAAATAATCAAATTTCCAGTTTGCCAGAAGACATGGTGAACTGTTCGAAATTATCTAAACTGGATGTGGAGGGAAACAAGCTCACAGCTCTCTCTGAGAACCACATAGCATCATGGACCATGCTTGCAGAACTTAATGCATGTAAGAATATGCTGGGTGTTCTGCCACAAAACATCGGAAGTCTTTCGCGTCTTATCCGGCTTGACCTTCATCAGAACAAAATTTCGTCTGTTCCACCATCAATAGGCGGTTGCTCCTCTCTTGTGGAGTTCTATTTGGGAATAAACTCACTATCAACATTACCAGCAGAGATTGGAGATCTATCACGTCTAGGAACATTGGATCTTCGTTCTAATCAGCTCAAGGAATATCCAGTTGGGGCATGTAAATTGAAGCTCTCGTACCTAGATCTTTCAAATAATTCCTTGACAGGATTGCATCCTGAGCTCGGAAACATGACTACTCTGAGAAAGCTTGTGCTTGTTGGCAATCCTTTGAGAACCCTTAGAAGCTCATTAGTAAATGGTCCTACAGCTGCTCTATTGAAGTATCTTAGGAGCCGCCTTTCTAATAGTGAAGAAACAAGTGCAAGCACTCCAACAAAGGAAAATGTGATTGCTTCAGCAGCTCGTATGTCCATTTCTTCAAAGGAACTTTCTCTGGAAGGTCTCAACTTGAGTGATGTCCCTTCAGAAGTTTGGGAATCTGGTGAGATCACGAAAGTTAATCTTTCTAAGAACTCTATCGAGGAATTGCCTGCTCAACTTTCTACATCTGTTTCCCTTCAGACATTAATTTTGTCAAGGAACAAAATTAAAGATTGGCCAGGTGCAATCTTGAAATCACTTCCCAATCTTATGTGCTTGAAGCTGGATAATAATCCCCTGAATCAGATTCCACTGGATGGGTTCCAAGTAGTCTCTGGGCTTCAGATTCTAGACCTAAGTGTTAATGCAGTTTCCTTCAGAGAGCATCCTAAGTTTTGCCACTTGCCACAACTGCGAGAGCTTTATTTGAGTCGAATCCAGCTATCTGAAGTCCCTGAAGATATCCTCAACTTATCTAACCTGATTATTCTTGACTTGAACCAGAATTCACTTCAATCGATTCCCAAGGGTATCAAGAACATGACTTCACTCAAACATCTAGACATATCCAACAACAACATTTCAAGTCTTCCTCCAGAACTGGGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTAAGAAGTATCAGGAGGCCAATTCTAGAAAGAGGAACAAAAGCTGTGTTGAACTACCTGAAAGACAGACTTCCAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_1 LRR_5 LRR_8

Protein Analysis

584

Amino Acids

64.1

Weight (kDa)

6.02

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 51 - 127 3.6e-07 Leucine-rich repeat region
LRR_8 PF13855 53 - 109 7e-07 Leucine rich repeat
LRR_14 PF23598 94 - 175 2e-06 Leucine-rich repeat region
LRR_8 PF13855 214 - 271 5.7e-07 Leucine rich repeat
LRR_14 PF23598 242 - 312 6.5e-08 Leucine-rich repeat region
LRR_8 PF13855 260 - 316 2.2e-06 Leucine rich repeat
LRR_8 PF13855 434 - 491 1.7e-08 Leucine rich repeat
LRR_14 PF23598 450 - 558 7.8e-10 Leucine-rich repeat region
LRR_8 PF13855 506 - 564 9.8e-08 Leucine rich repeat
LRR_4 PF12799 506 - 544 3.7e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1337
AccII CGCG 1 cut(s) 622
AciI CCGC 2 cut(s) 681, 994
AclWI GGATC 2 cut(s) 12, 783
AcoI YGGCCR 1 cut(s) 1256
AcsI RAATTY 3 cut(s) 444, 654, 1525
AcuI CTGAAG 8 cut(s) 212, 1038, 1107, 1202, 1346, 1381, 1488, 1497
AfaI GTAC 2 cut(s) 72, 836
AfiI CCNNNNNNNGG 4 cut(s) 677, 881, 1337, 1622
AjiI CACGTC 1 cut(s) 761
AjnI CCWGG 1 cut(s) 1258
AjuI GAANNNNNNNTTGG 4 cut(s) 137, 169, 792, 824
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 2 cut(s) 1106, 1357
AlwI GGATC 2 cut(s) 12, 783
AoxI GGCC 3 cut(s) 429, 1256, 1688
ApeKI GCWGC 4 cut(s) 20, 254, 968, 1058
ApoI RAATTY 3 cut(s) 444, 654, 1525
ArsI GACNNNNNNTTYG 2 cut(s) 1213, 1245
AseI ATTAAT 1 cut(s) 1226
Asp700I GAANNNNTTC 1 cut(s) 616
AspS9I GGNCC 2 cut(s) 549, 959
AsuHPI GGTGA 2 cut(s) 481, 1154
AsuII TTCGAA 1 cut(s) 479
AvaII GGWCC 2 cut(s) 549, 959
BalI TGGCCA 1 cut(s) 1258
BanII GRGCYC 1 cut(s) 882
BarI GAAGNNNNNNTAC 2 cut(s) 818, 850
BbsI GAAGAC 2 cut(s) 468, 1601
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 4 cut(s) 32, 266, 955, 1070
BccI CCATC 2 cut(s) 679, 1331
BciT130I CCWGG 1 cut(s) 1260
BcoDI GTCTC 2 cut(s) 1106, 1357
BfaI CTAG 5 cut(s) 764, 839, 1370, 1580, 1697
BfmI CTRYAG 1 cut(s) 963
BglII AGATCT 3 cut(s) 187, 751, 841
BisI GCNGC 5 cut(s) 21, 255, 969, 994, 1059
BlsI GCNGC 5 cut(s) 22, 256, 970, 995, 1060
Bme1390I CCNGG 1 cut(s) 1260
Bme18I GGWCC 2 cut(s) 549, 959
BmgBI CACGTC 1 cut(s) 761
BmgT120I GGNCC 2 cut(s) 549, 959
BmiI GGNNCC 3 cut(s) 992, 1343, 1667
BmrFI CCNGG 1 cut(s) 1260
BmrI ACTGGG 1 cut(s) 1631
BmsI GCATC 3 cut(s) 551, 880, 1414
BmuI ACTGGG 1 cut(s) 1631
BpiI GAAGAC 2 cut(s) 468, 1601
BpmI CTGGAG 1 cut(s) 1599
Bpu10I CCTNAGC 2 cut(s) 321, 876
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 5 cut(s) 47, 779, 1129, 1652, 1664
Bsa29I ATCGAT 1 cut(s) 1538
BsaBI GATNNNNATC 1 cut(s) 1311
BsaI GGTCTC 1 cut(s) 1106
BsaJI CCNNGG 1 cut(s) 1545
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 4 cut(s) 677, 881, 1337, 1622
Bse1I ACTGG 6 cut(s) 125, 450, 498, 806, 1338, 1626
Bse8I GATNNNNATC 1 cut(s) 1311
BseBI CCWGG 1 cut(s) 1260
BseCI ATCGAT 1 cut(s) 1538
BseDI CCNNGG 1 cut(s) 1545
BseGI GGATG 6 cut(s) 73, 295, 502, 871, 1342, 1405
BseJI GATNNNNATC 1 cut(s) 1311
BseLI CCNNNNNNNGG 4 cut(s) 677, 881, 1337, 1622
BseMII CTCAG 5 cut(s) 69, 312, 519, 867, 890
BseNI ACTGG 6 cut(s) 125, 450, 498, 806, 1338, 1626
BseRI GAGGAG 1 cut(s) 679
BseXI GCAGC 4 cut(s) 32, 266, 955, 1070
BseYI CCCAGC 1 cut(s) 586
Bsh1236I CGCG 1 cut(s) 622
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 431, 1258, 1690
BshVI ATCGAT 1 cut(s) 1538
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 882
BsiSI CCGG 2 cut(s) 105, 631
BslFI GGGAC 2 cut(s) 1103, 1457
BslI CCNNNNNNNGG 4 cut(s) 677, 881, 1337, 1622
BsmAI GTCTC 2 cut(s) 1106, 1357
BsmFI GGGAC 2 cut(s) 1103, 1457
BsnI GGCC 3 cut(s) 431, 1258, 1690
Bso31I GGTCTC 1 cut(s) 1106
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 1 cut(s) 882
Bsp143I GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
BspACI CCGC 2 cut(s) 681, 994
BspANI GGCC 3 cut(s) 431, 1258, 1690
BspCNI CTCAG 5 cut(s) 70, 313, 520, 868, 891
BspDI ATCGAT 1 cut(s) 1538
BspFNI CGCG 1 cut(s) 622
BspLI GGNNCC 3 cut(s) 992, 1343, 1667
BspPI GGATC 2 cut(s) 12, 783
BspT104I TTCGAA 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 1106
BsrI ACTGG 6 cut(s) 125, 450, 498, 806, 1338, 1626
BssECI CCNNGG 1 cut(s) 1545
BssMI GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
BssT1I CCWWGG 1 cut(s) 1545
Bst2UI CCWGG 1 cut(s) 1260
Bst4CI ACNGT 2 cut(s) 362, 476
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 558, 1024, 1191
BstF5I GGATG 6 cut(s) 73, 295, 502, 871, 1342, 1405
BstFNI CGCG 1 cut(s) 622
BstKTI GATC 7 cut(s) 7, 190, 754, 778, 844, 1149, 1750
BstMAI GTCTC 2 cut(s) 1106, 1357
BstMBI GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 3 cut(s) 877, 1058, 1432
BstNI CCWGG 1 cut(s) 1260
BstNSI RCATGY 2 cut(s) 576, 819
BstSCI CCNGG 1 cut(s) 1258
BstSFI CTRYAG 1 cut(s) 963
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 4 cut(s) 32, 266, 955, 1070
BstV2I GAAGAC 2 cut(s) 468, 1601
BstX2I RGATCY 4 cut(s) 187, 751, 775, 841
BstYI RGATCY 4 cut(s) 187, 751, 775, 841
Bsu15I ATCGAT 1 cut(s) 1538
BsuRI GGCC 3 cut(s) 431, 1258, 1690
BsuTUI ATCGAT 1 cut(s) 1538
BtgZI GCGATG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 761
BtsCI GGATG 6 cut(s) 73, 295, 502, 871, 1342, 1405
BtsIMutI CAGTG 1 cut(s) 1331
Cac8I GCNNGC 3 cut(s) 558, 1024, 1191
Cfr13I GGNCC 2 cut(s) 549, 959
ClaI ATCGAT 1 cut(s) 1538
CseI GACGC 1 cut(s) 611
Csp6I GTAC 2 cut(s) 71, 835
CviAII CATG 7 cut(s) 466, 546, 553, 573, 816, 889, 1561
CviQI GTAC 2 cut(s) 71, 835
DpnI GATC 7 cut(s) 6, 189, 753, 777, 843, 1148, 1749
DpnII GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
DraI TTTAAA 1 cut(s) 426
EaeI YGGCCR 1 cut(s) 1256
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 1545
Eco24I GRGCYC 1 cut(s) 882
Eco31I GGTCTC 1 cut(s) 1106
Eco32I GATATC 1 cut(s) 1483
Eco47I GGWCC 2 cut(s) 549, 959
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 8 cut(s) 212, 1038, 1107, 1202, 1346, 1381, 1488, 1497
EcoICRI GAGCTC 1 cut(s) 880
EcoRI GAATTC 1 cut(s) 1525
EcoRII CCWGG 1 cut(s) 1258
EcoRV GATATC 1 cut(s) 1483
EcoT14I CCWWGG 1 cut(s) 1545
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 1545
FaeI CATG 7 cut(s) 469, 549, 556, 576, 819, 892, 1564
FalI AAGNNNNNCTT 3 cut(s) 1146, 1178, 1725
FaqI GGGAC 2 cut(s) 1103, 1457
FatI CATG 7 cut(s) 465, 545, 552, 572, 815, 888, 1560
Fnu4HI GCNGC 5 cut(s) 21, 255, 969, 994, 1059
FokI GGATG 6 cut(s) 80, 302, 509, 858, 1349, 1392
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 5 cut(s) 21, 255, 969, 994, 1059
FspBI CTAG 5 cut(s) 764, 839, 1370, 1580, 1697
GluI GCNGC 5 cut(s) 21, 255, 969, 994, 1059
GsaI CCCAGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 1599
HaeIII GGCC 3 cut(s) 431, 1258, 1690
HapII CCGG 2 cut(s) 105, 631
HgaI GACGC 1 cut(s) 611
Hin1II CATG 7 cut(s) 469, 549, 556, 576, 819, 892, 1564
HindIII AAGCTT 2 cut(s) 353, 905
HpaII CCGG 2 cut(s) 105, 631
HphI GGTGA 2 cut(s) 481, 1154
Hpy166II GTNNAC 1 cut(s) 472
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 6 cut(s) 104, 650, 1091, 1131, 1226, 1405
HpyCH4III ACNGT 2 cut(s) 362, 476
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 7 cut(s) 142, 560, 572, 871, 1022, 1265, 1388
HpyF10VI GCNNNNNNNGC 3 cut(s) 877, 1058, 1432
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 7 cut(s) 469, 549, 556, 576, 819, 892, 1564
Kzo9I GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
LmnI GCTCC 3 cut(s) 265, 692, 990
Lsp1109I GCAGC 4 cut(s) 32, 266, 955, 1070
LweI GCATC 3 cut(s) 551, 880, 1414
MaeI CTAG 5 cut(s) 764, 839, 1370, 1580, 1697
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 1 cut(s) 227
MalI GATC 7 cut(s) 6, 189, 753, 777, 843, 1148, 1749
MboI GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
MboII GAAGA 8 cut(s) 197, 205, 473, 770, 1022, 1068, 1490, 1601
MflI RGATCY 4 cut(s) 187, 751, 775, 841
MhlI GDGCHC 1 cut(s) 882
MlsI TGGCCA 1 cut(s) 1258
MluNI TGGCCA 1 cut(s) 1258
MlyI GAGTC 1 cut(s) 1459
MmeI TCCRAC 2 cut(s) 1055, 1614
Mox20I TGGCCA 1 cut(s) 1258
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 1 cut(s) 1258
Msp20I TGGCCA 1 cut(s) 1258
MspA1I CMGCKG 1 cut(s) 968
MspI CCGG 2 cut(s) 105, 631
MspR9I CCNGG 1 cut(s) 1260
MvaI CCWGG 1 cut(s) 1260
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 3 cut(s) 877, 1058, 1432
NdeII GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
NlaIII CATG 7 cut(s) 469, 549, 556, 576, 819, 892, 1564
NlaIV GGNNCC 3 cut(s) 992, 1343, 1667
NmuCI GTSAC 1 cut(s) 227
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 2 cut(s) 576, 819
NspV TTCGAA 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 9 cut(s) 10, 43, 392, 1136, 1321, 1327, 1366, 1455, 1540
PflMI CCANNNNNTGG 1 cut(s) 1337
PkrI GCNGC 5 cut(s) 22, 256, 970, 995, 1060
PleI GAGTC 1 cut(s) 1458
PpsI GAGTC 1 cut(s) 1458
PshBI ATTAAT 1 cut(s) 1226
Psp124BI GAGCTC 1 cut(s) 882
Psp6I CCWGG 1 cut(s) 1258
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 1 cut(s) 1258
PspN4I GGNNCC 3 cut(s) 992, 1343, 1667
PspPI GGNCC 2 cut(s) 549, 959
PsuI RGATCY 4 cut(s) 187, 751, 775, 841
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 2 cut(s) 72, 836
RsaNI GTAC 2 cut(s) 71, 835
SacI GAGCTC 1 cut(s) 882
SatI GCNGC 5 cut(s) 21, 255, 969, 994, 1059
Sau3AI GATC 7 cut(s) 4, 187, 751, 775, 841, 1146, 1747
Sau96I GGNCC 2 cut(s) 549, 959
SchI GAGTC 1 cut(s) 1459
ScrFI CCNGG 1 cut(s) 1260
SduI GDGCHC 1 cut(s) 882
SfaNI GCATC 3 cut(s) 551, 880, 1414
SfcI CTRYAG 1 cut(s) 963
SfuI TTCGAA 1 cut(s) 479
SinI GGWCC 2 cut(s) 549, 959
SmlI CTYRAG 5 cut(s) 62, 794, 1108, 1631, 1643
SmoI CTYRAG 5 cut(s) 62, 794, 1108, 1631, 1643
SsiI CCGC 2 cut(s) 681, 994
SspMI CTAG 5 cut(s) 764, 839, 1370, 1580, 1697
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 1 cut(s) 1258
StyI CCWWGG 1 cut(s) 1545
TaaI ACNGT 2 cut(s) 362, 476
TaiI ACGT 1 cut(s) 763
TaqI TCGA 5 cut(s) 25, 479, 1179, 1453, 1538
TauI GCSGC 1 cut(s) 996
TfiI GAWTC 9 cut(s) 10, 43, 392, 1136, 1321, 1327, 1366, 1455, 1540
TscAI CASTG 1 cut(s) 1338
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 4 cut(s) 20, 254, 968, 1058
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 293, 632
TspRI CASTG 1 cut(s) 1338
Van91I CCANNNNNTGG 1 cut(s) 1337
VpaK11BI GGWCC 2 cut(s) 549, 959
VspI ATTAAT 1 cut(s) 1226
XapI RAATTY 3 cut(s) 444, 654, 1525
XbaI TCTAGA 3 cut(s) 1369, 1579, 1696
XceI RCATGY 2 cut(s) 576, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 1352
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 5 cut(s) 764, 839, 1370, 1580, 1697
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.