Rorug05G0145600

Leucine-rich repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003583
Physical Location & Seq
Reverse (-)
13514321 .. 13516402
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0145600.1

Sequence Viewer

Length: 855 bp
ATGGCCTGGCCCATGATCTCCTCGGTTGTCGAAGAAGTTGACGCCGTGGTCGCGGCAGCACTGGAGCAGCGACTTCGCCTCCTTCACGTCCAGCGACTTCGACTTCGCCTTCGCCGTACGACAGCTGGCTCACCTTCAGCCCCGACCCCCCTCAACCATCGTTTTGTTTCCCCTCCAAGTGGAACCGCAACTAGACTTGAGGCGGCGAATTTGTACACGAATTGGTTGTTAGGAGATGATATTGCTCAAGAGGTAGAGGAGCCTACAATTGAGAACACAGAGTTCTATGAGCAGGCTGAGAAAGGTACCTTGATCATGATGGGAGATACTGAGGTTACAATGAAGTCTAAGAAGACGGTTTTTGTAACTGTTGGAACTACTAGTTTTGATGCTCTAGTGAAAGCGGTGGACACACGAGAGGTTAAAGAAGAGCTGTCAAGAAGAGGGTACACCGAGATTCTCATTCAAATGGGCCGTGGCTCCTATATTCCCTCAAAGTCTGACGGAGGTGATGACTCCATTGCGGTAGATTACTTCACTTTTTCATCAAGCATTGCAGACTATCTGAGAGCAGCATCTCTTGTCATTAGCCATGCAGGGTCAGGGAGCATATTTGAGACATTGCGGCTTGGGAAGCCTTTAATTGTTGTAGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAGCAGACAGGAAGCATCTGTACTATGCTCGCCCAAAGACACTTCAACACATTATAGCAGATATGAAAGTGGAGTCCCTCATTCCATACCATCCAGGTGATGCCACACCAGTTGCCAAGCTTATCAATAGGTTTCTTGGTTTTTCAGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_1 LRR_5 LRR_8

Protein Analysis

284

Amino Acids

31.52

Weight (kDa)

5.27

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tran_28_C PF04101 119 - 268 1.5e-34 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AccII CGCG 1 cut(s) 53
AciI CCGC 6 cut(s) 53, 186, 203, 404, 524, 625
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 5 cut(s) 118, 215, 307, 449, 722
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 467, 746
AhlI ACTAGT 1 cut(s) 380
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 2 cut(s) 5, 793
AluBI AGCT 3 cut(s) 125, 433, 820
AluI AGCT 3 cut(s) 125, 433, 820
Alw26I GTCTC 1 cut(s) 611
AoxI GGCC 3 cut(s) 3, 8, 472
ApeKI GCWGC 3 cut(s) 56, 67, 572
ApoI RAATTY 1 cut(s) 208
ArsI GACNNNNNNTTYG 4 cut(s) 87, 93, 119, 125
Asp718I GGTACC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 9, 472
AsuHPI GGTGA 3 cut(s) 123, 521, 809
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BanI GGYRCC 1 cut(s) 305
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 3 cut(s) 68, 79, 584
BccI CCATC 5 cut(s) 165, 313, 661, 684, 798
BceAI ACGGC 3 cut(s) 29, 99, 459
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 2 cut(s) 7, 795
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 611
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 4 cut(s) 192, 381, 395, 701
BisI GCNGC 6 cut(s) 54, 57, 68, 204, 573, 626
BlsI GCNGC 6 cut(s) 55, 58, 69, 205, 574, 627
Bme1390I CCNGG 2 cut(s) 7, 795
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 9, 472
BmiI GGNNCC 4 cut(s) 184, 261, 307, 481
BmrFI CCNGG 2 cut(s) 7, 795
BmsI GCATC 4 cut(s) 379, 584, 724, 790
BpiI GAAGAC 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 218, 231
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 21, 45, 475
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 66, 809
Bse3DI GCAATG 3 cut(s) 519, 552, 620
BseBI CCWGG 2 cut(s) 7, 795
BseDI CCNNGG 3 cut(s) 21, 45, 475
BseGI GGATG 1 cut(s) 790
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 3 cut(s) 519, 552, 620
BseMII CTCAG 3 cut(s) 288, 321, 557
BseNI ACTGG 2 cut(s) 66, 809
BseRI GAGGAG 2 cut(s) 10, 272
BseXI GCAGC 3 cut(s) 68, 79, 584
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 5, 10, 474
BshNI GGYRCC 1 cut(s) 305
BsiWI CGTACG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 760
BsnI GGCC 3 cut(s) 5, 10, 474
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 2 cut(s) 15, 312
BspACI CCGC 6 cut(s) 53, 186, 203, 404, 524, 625
BspANI GGCC 3 cut(s) 5, 10, 474
BspCNI CTCAG 3 cut(s) 289, 322, 558
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 4 cut(s) 184, 261, 307, 481
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 305
BsrDI GCAATG 3 cut(s) 519, 552, 620
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 2 cut(s) 66, 809
BssECI CCNNGG 3 cut(s) 21, 45, 475
BssMI GATC 2 cut(s) 15, 312
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 2 cut(s) 7, 795
Bst4CI ACNGT 2 cut(s) 358, 370
Bst6I CTCTTC 2 cut(s) 423, 436
BstACI GRCGYC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 3 cut(s) 127, 294, 730
BstDEI CTNAG 4 cut(s) 297, 330, 348, 566
BstDSI CCRYGG 2 cut(s) 45, 475
BstF5I GGATG 1 cut(s) 790
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 2 cut(s) 18, 315
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 2 cut(s) 15, 312
BstMWI GCNNNNNNNGC 2 cut(s) 50, 634
BstNI CCWGG 2 cut(s) 7, 795
BstSCI CCNGG 2 cut(s) 5, 793
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 68, 79, 584
BstV2I GAAGAC 1 cut(s) 359
BsuRI GGCC 3 cut(s) 5, 10, 474
BtgI CCRYGG 2 cut(s) 45, 475
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 790
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 3 cut(s) 127, 294, 730
CciI TCATGA 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 9, 472
CseI GACGC 1 cut(s) 50
Csp6I GTAC 5 cut(s) 117, 214, 306, 448, 721
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 3 cut(s) 13, 316, 593
CviQI GTAC 5 cut(s) 117, 214, 306, 448, 721
DdeI CTNAG 4 cut(s) 297, 330, 348, 566
DpnI GATC 2 cut(s) 17, 314
DpnII GATC 2 cut(s) 15, 312
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 423, 436
EarI CTCTTC 2 cut(s) 423, 436
Eco57I CTGAAG 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 5, 793
FaeI CATG 3 cut(s) 16, 319, 596
FaqI GGGAC 1 cut(s) 760
FatI CATG 3 cut(s) 12, 315, 592
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 6 cut(s) 54, 57, 68, 204, 573, 626
FokI GGATG 1 cut(s) 777
Fsp4HI GCNGC 6 cut(s) 54, 57, 68, 204, 573, 626
FspBI CTAG 4 cut(s) 192, 381, 395, 701
GluI GCNGC 6 cut(s) 54, 57, 68, 204, 573, 626
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 3 cut(s) 5, 10, 474
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 16, 319, 596
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 3 cut(s) 457, 515, 773
HphI GGTGA 3 cut(s) 123, 521, 809
Hpy166II GTNNAC 4 cut(s) 40, 216, 409, 450
Hpy188I TCNGA 3 cut(s) 502, 567, 847
Hpy188III TCNNGA 3 cut(s) 248, 316, 438
Hpy8I GTNNAC 4 cut(s) 40, 216, 409, 450
HpyAV CCTTC 3 cut(s) 92, 119, 144
HpyCH4III ACNGT 2 cut(s) 358, 370
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 557, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 634
HpyF3I CTNAG 4 cut(s) 297, 330, 348, 566
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 16, 319, 596
KpnI GGTACC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 2 cut(s) 15, 312
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 4 cut(s) 64, 259, 485, 606
Lsp1109I GCAGC 3 cut(s) 68, 79, 584
LweI GCATC 4 cut(s) 379, 584, 724, 790
MaeI CTAG 4 cut(s) 192, 381, 395, 701
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 334, 364
MalI GATC 2 cut(s) 17, 314
MboI GATC 2 cut(s) 15, 312
MboII GAAGA 6 cut(s) 44, 364, 440, 453, 671, 707
MfeI CAATTG 1 cut(s) 267
MluCI AATT 4 cut(s) 208, 220, 267, 642
MlyI GAGTC 2 cut(s) 509, 782
MmeI TCCRAC 1 cut(s) 352
MseI TTAA 3 cut(s) 423, 641, 654
MslI CAYNNNNRTG 3 cut(s) 467, 681, 795
MspA1I CMGCKG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 7, 795
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 7, 795
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 50, 634
NdeII GATC 2 cut(s) 15, 312
NlaIII CATG 3 cut(s) 16, 319, 596
NlaIV GGNNCC 4 cut(s) 184, 261, 307, 481
PagI TCATGA 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PfeI GAWTC 1 cut(s) 457
Pfl23II CGTACG 1 cut(s) 116
PkrI GCNGC 6 cut(s) 55, 58, 69, 205, 574, 627
PleI GAGTC 2 cut(s) 509, 781
PpsI GAGTC 2 cut(s) 509, 781
Psp6I CCWGG 2 cut(s) 5, 793
PspGI CCWGG 2 cut(s) 5, 793
PspLI CGTACG 1 cut(s) 116
PspN4I GGNNCC 4 cut(s) 184, 261, 307, 481
PspPI GGNCC 2 cut(s) 9, 472
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 5 cut(s) 118, 215, 307, 449, 722
RsaNI GTAC 5 cut(s) 117, 214, 306, 448, 721
RseI CAYNNNNRTG 3 cut(s) 467, 681, 795
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 3 cut(s) 423, 641, 654
SatI GCNGC 6 cut(s) 54, 57, 68, 204, 573, 626
Sau3AI GATC 2 cut(s) 15, 312
Sau96I GGNCC 2 cut(s) 9, 472
SchI GAGTC 2 cut(s) 509, 782
ScrFI CCNGG 2 cut(s) 7, 795
SfaNI GCATC 4 cut(s) 379, 584, 724, 790
SmiMI CAYNNNNRTG 3 cut(s) 467, 681, 795
SmlI CTYRAG 2 cut(s) 197, 246
SmoI CTYRAG 2 cut(s) 197, 246
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 4 cut(s) 208, 220, 267, 642
SsiI CCGC 6 cut(s) 53, 186, 203, 404, 524, 625
SspMI CTAG 4 cut(s) 192, 381, 395, 701
StyD4I CCNGG 2 cut(s) 5, 793
TaaI ACNGT 2 cut(s) 358, 370
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 30, 100
TasI AATT 4 cut(s) 208, 220, 267, 642
TatI WGTACW 2 cut(s) 213, 720
TauI GCSGC 3 cut(s) 56, 206, 628
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 423, 641, 654
Tru9I TTAA 3 cut(s) 423, 641, 654
TscAI CASTG 1 cut(s) 66
TseI GCWGC 3 cut(s) 56, 67, 572
TspDTI ATGAA 4 cut(s) 356, 534, 672, 779
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 1 cut(s) 66
XapI RAATTY 1 cut(s) 208
XspI CTAG 4 cut(s) 192, 381, 395, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.