Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003583

Physical Location & Seq

Genomic Coordinates Reverse (-)

54472037 .. 54474856

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGTTTGTGAAGTTGGGAAATGGAGGAAGGTTTCACTTTGCTATATTCCATAGGTTTCTTCGTAACACTGTGTACTCTACAATGTCGCCGTATGTCTTGGTAGACTTGCTTGCATCAAAGTATTTCAAGTATATTGATGTCCGTGGGAGGAAAGATTGGCTGGGGTGTGGGGAAGAGGTTATAGGGATTTGCATGTTGATTGGGTACGCCAAGTCATTAATATATGTTAATGTCAATGTGCATACACTAATCTTATCCAGAAACAAGATTAAAGAGTGGCCAGGTGCAATTTTAAGCTCGCTTCGTAATCTTTTGTGTTTGAAGCTGGACAATAATCCACTAAGACAGATACCATCAGATGATGGATTCCAAGCAACCCCTATGCTTCAGATTCTGGATCTAAGTGGTAATGCAGCTTCGTCACCAGAGCACCCTATATTTTCTAGCTTACAATATCTGCAAGAGCTTTATCTGAGACTAATGCAGCTACACGAAGTCCCATTAGATATCTTGAGTTTGCAGCAACTGTGGATCCTAGACTTCAGCCAAAATTCCTTGCAGTCAGTTCCGGTGGAGTTCAAAAATTTTACTTCACTCACTGAGCTAGGCCTATCTGACAACAACATATCAACACTTCCTCCAAAATTGGTCAATATATTACCTGGTTTGAAGGAAGGGCGTGAGAATATGTCAAAGAAAATTCCTGATTCTGCTATAATATTCATGAACGATAAAGAGGTATATTGCACTGAAGTGGCAAGCTCTTCATATGAATTTGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_1 LRR_5 LRR_8

Protein Analysis

263

Amino Acids

29.76

Weight (kDa)

5.97

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	80 - 138	1.9e-07	Leucine rich repeat
LRR_8	PF13855	153 - 210	1.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15410 AT3G15410
fragaria_vesca	FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490
malus_domestica	MD00G1090000.v1.1 MD11G1243500.v1.1 MD11G1243700.v1.1
prunus_persica	Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1
pyrus_communis	pycom11g21400
rosa_chinensis	RchiOBHm_Chr5g0034391
rosa_laevigata	RLG00000009553 RLG00000017429 RLG00000033544
rosa_multiflora	Rmu_sc0000062.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037620 Rroxscaffold_1G00045890
rosa_rugosa	Rorug01G0049900 Rorug04G0280400 Rorug05G0145600
rosa_samantha	Rh1DG151400 Rh2AG335200 Rh4CG178400 Rh5AG237300 Rh5BG238000 Rh5CG268100 Rh5DG245600
rosa_wichuraiana	Rw5G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AclWI	GGATC	3 cut(s)	408, 529, 542
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	4 cut(s)	553, 586, 702, 776
AcuI	CTGAAG	3 cut(s)	374, 529, 774
AfaI	GTAC	2 cut(s)	77, 209
AgsI	TTSAA	4 cut(s)	130, 325, 583, 673
AjnI	CCWGG	2 cut(s)	283, 664
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	8 cut(s)	300, 328, 419, 450, 469, 490, 607, 765
AluI	AGCT	8 cut(s)	300, 328, 419, 450, 469, 490, 607, 765
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	3 cut(s)	408, 529, 542
AlwNI	CAGNNNCTG	2 cut(s)	397, 529
AoxI	GGCC	2 cut(s)	281, 610
ApeKI	GCWGC	3 cut(s)	416, 487, 523
ApoI	RAATTY	4 cut(s)	553, 586, 702, 776
AseI	ATTAAT	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	417
BalI	TGGCCA	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	534
BarI	GAAGNNNNNNTAC	2 cut(s)	403, 435
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	3 cut(s)	428, 499, 535
BccI	CCATC	2 cut(s)	359, 364
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	285, 666
BcoDI	GTCTC	1 cut(s)	472
BfaI	CTAG	3 cut(s)	447, 539, 608
BisI	GCNGC	3 cut(s)	417, 488, 524
BlsI	GCNGC	3 cut(s)	418, 489, 525
Bme1390I	CCNGG	2 cut(s)	285, 666
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	2 cut(s)	285, 666
BmsI	GCATC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
BseBI	CCWGG	2 cut(s)	285, 666
BseDI	CCNNGG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	467, 594
BseXI	GCAGC	3 cut(s)	428, 499, 535
BseYI	CCCAGC	1 cut(s)	163
BshFI	GGCC	2 cut(s)	283, 612
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	283, 612
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	400, 534, 781
BspANI	GGCC	2 cut(s)	283, 612
BspCNI	CTCAG	2 cut(s)	468, 595
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	536
BspPI	GGATC	3 cut(s)	408, 529, 542
BspQI	GCTCTTC	1 cut(s)	772
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	3 cut(s)	400, 534, 781
Bst2UI	CCWGG	2 cut(s)	285, 666
Bst4CI	ACNGT	2 cut(s)	73, 531
Bst6I	CTCTTC	2 cut(s)	171, 772
BstC8I	GCNNGC	3 cut(s)	114, 302, 763
BstDEI	CTNAG	4 cut(s)	344, 404, 476, 603
BstDSI	CCRYGG	1 cut(s)	145
BstKTI	GATC	3 cut(s)	403, 537, 784
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	3 cut(s)	400, 534, 781
BstNI	CCWGG	2 cut(s)	285, 666
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	283, 664
BstV1I	GCAGC	3 cut(s)	428, 499, 535
BstX2I	RGATCY	2 cut(s)	400, 534
BstYI	RGATCY	2 cut(s)	400, 534
BsuRI	GGCC	2 cut(s)	283, 612
BtgI	CCRYGG	1 cut(s)	145
BtsIMutI	CAGTG	3 cut(s)	69, 600, 750
Cac8I	GCNNGC	3 cut(s)	114, 302, 763
CaiI	CAGNNNCTG	2 cut(s)	397, 529
CciI	TCATGA	1 cut(s)	726
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	76, 208
CviAII	CATG	2 cut(s)	196, 727
CviQI	GTAC	2 cut(s)	76, 208
DdeI	CTNAG	4 cut(s)	344, 404, 476, 603
DpnI	GATC	3 cut(s)	402, 536, 783
DpnII	GATC	3 cut(s)	400, 534, 781
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	171, 772
EarI	CTCTTC	2 cut(s)	171, 772
Eco147I	AGGCCT	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	511
Eco57I	CTGAAG	3 cut(s)	374, 529, 774
EcoRII	CCWGG	2 cut(s)	283, 664
EcoRV	GATATC	1 cut(s)	511
FaeI	CATG	2 cut(s)	199, 730
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	2 cut(s)	195, 726
FauNDI	CATATG	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	417, 488, 524
Fsp4HI	GCNGC	3 cut(s)	417, 488, 524
FspBI	CTAG	3 cut(s)	447, 539, 608
GluI	GCNGC	3 cut(s)	417, 488, 524
GsaI	CCCAGC	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	283, 612
HapII	CCGG	1 cut(s)	572
Hin1II	CATG	2 cut(s)	199, 730
HinfI	GANTC	3 cut(s)	369, 394, 710
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	76, 106
Hpy188I	TCNGA	4 cut(s)	361, 393, 477, 619
Hpy188III	TCNNGA	5 cut(s)	261, 398, 514, 707, 727
Hpy8I	GTNNAC	2 cut(s)	76, 106
HpyAV	CCTTC	3 cut(s)	24, 667, 671
HpyCH4III	ACNGT	2 cut(s)	73, 531
HpyF3I	CTNAG	4 cut(s)	344, 404, 476, 603
Hsp92II	CATG	2 cut(s)	199, 730
Kzo9I	GATC	3 cut(s)	400, 534, 781
LguI	GCTCTTC	1 cut(s)	772
Lsp1109I	GCAGC	3 cut(s)	428, 499, 535
LweI	GCATC	1 cut(s)	125
MabI	ACCWGGT	1 cut(s)	664
MaeI	CTAG	3 cut(s)	447, 539, 608
MaeIII	GTNAC	2 cut(s)	65, 423
MalI	GATC	3 cut(s)	402, 536, 783
MboI	GATC	3 cut(s)	400, 534, 781
MboII	GAAGA	3 cut(s)	53, 188, 759
MflI	RGATCY	2 cut(s)	400, 534
MhlI	GDGCHC	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	283
MluCI	AATT	6 cut(s)	291, 553, 586, 647, 702, 776
MluNI	TGGCCA	1 cut(s)	283
MnlI	CCTC	5 cut(s)	20, 144, 172, 651, 733
Mox20I	TGGCCA	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	4 cut(s)	221, 231, 273, 296
MslI	CAYNNNNRTG	1 cut(s)	755
Msp20I	TGGCCA	1 cut(s)	283
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	2 cut(s)	285, 666
MvaI	CCWGG	2 cut(s)	285, 666
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	3 cut(s)	400, 534, 781
NlaIII	CATG	2 cut(s)	199, 730
NlaIV	GGNNCC	1 cut(s)	536
NmuCI	GTSAC	1 cut(s)	423
NspI	RCATGY	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	755
PagI	TCATGA	1 cut(s)	726
PceI	AGGCCT	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	772
PfeI	GAWTC	3 cut(s)	369, 394, 710
PkrI	GCNGC	3 cut(s)	418, 489, 525
PshBI	ATTAAT	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	283, 664
PspFI	CCCAGC	1 cut(s)	163
PspGI	CCWGG	2 cut(s)	283, 664
PspN4I	GGNNCC	1 cut(s)	536
PstNI	CAGNNNCTG	2 cut(s)	397, 529
PsuI	RGATCY	2 cut(s)	400, 534
RsaI	GTAC	2 cut(s)	77, 209
RsaNI	GTAC	2 cut(s)	76, 208
RseI	CAYNNNNRTG	1 cut(s)	755
SapI	GCTCTTC	1 cut(s)	772
SaqAI	TTAA	4 cut(s)	221, 231, 273, 296
SatI	GCNGC	3 cut(s)	417, 488, 524
Sau3AI	GATC	3 cut(s)	400, 534, 781
ScrFI	CCNGG	2 cut(s)	285, 666
SduI	GDGCHC	1 cut(s)	435
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	6 cut(s)	291, 553, 586, 647, 702, 776
SseBI	AGGCCT	1 cut(s)	612
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	3 cut(s)	447, 539, 608
StuI	AGGCCT	1 cut(s)	612
StyD4I	CCNGG	2 cut(s)	283, 664
TaaI	ACNGT	2 cut(s)	73, 531
TasI	AATT	6 cut(s)	291, 553, 586, 647, 702, 776
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	369, 394, 710
Tru1I	TTAA	4 cut(s)	221, 231, 273, 296
Tru9I	TTAA	4 cut(s)	221, 231, 273, 296
TscAI	CASTG	3 cut(s)	76, 607, 757
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	3 cut(s)	416, 487, 523
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	4 cut(s)	715, 743, 759, 789
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	3 cut(s)	76, 607, 757
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	4 cut(s)	553, 586, 702, 776
XceI	RCATGY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	3 cut(s)	447, 539, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.