Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003583

Physical Location & Seq

Genomic Coordinates Forward (+)

48570487 .. 48596513

Gene Structure 26027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGAGTTTGTGAAGTTGGGAAATGGAGGAAGGTTTCACTCTGCTATATTCCATAGGTTTCTTCATAACAATGAAAGGCGTGAGAAAATGTCAAAGATTCCTGATTCTGCCATATTCATGAACGATAATGAGCTTTGTCTGGTCTTCTGCTGCTCGTCTGGTCTTCTAGCTTCGTCGGACCTTTTCTGCTCGTCTGCTCTTCTTCACAAGTCAGAATCTTTTCTGCTCAAGACTTCTCCTCATTCTATTCGCTTGGACCTTGAAGCTTGGAGCTTCAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF

Protein Analysis

94

Amino Acids

10.73

Weight (kDa)

6.95

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15410 AT3G15410
fragaria_vesca	FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490
malus_domestica	MD00G1090000.v1.1 MD11G1243500.v1.1 MD11G1243700.v1.1
prunus_persica	Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1
pyrus_communis	pycom11g21400
rosa_chinensis	RchiOBHm_Chr5g0034391
rosa_laevigata	RLG00000009553 RLG00000017429 RLG00000033544
rosa_multiflora	Rmu_sc0000062.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037620 Rroxscaffold_1G00045890
rosa_rugosa	Rorug01G0049900 Rorug04G0280400 Rorug05G0145600
rosa_samantha	Rh1DG151400 Rh2AG335200 Rh4CG178400 Rh5AG237300 Rh5BG238000 Rh5CG268100 Rh5DG245600
rosa_wichuraiana	Rw5G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	263, 277
AluBI	AGCT	4 cut(s)	133, 170, 266, 273
AluI	AGCT	4 cut(s)	133, 170, 266, 273
ApeKI	GCWGC	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	178, 256
AvaII	GGWCC	2 cut(s)	178, 256
BbsI	GAAGAC	2 cut(s)	136, 155
BbvI	GCAGC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	167, 283
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme18I	GGWCC	2 cut(s)	178, 256
BmgT120I	GGNCC	2 cut(s)	178, 256
BpiI	GAAGAC	2 cut(s)	136, 155
BpuEI	CTTGAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	2 cut(s)	136, 155
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	178, 256
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	4 cut(s)	133, 170, 266, 273
CviKI_1	RGCY	4 cut(s)	133, 170, 266, 273
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	178, 256
FaeI	CATG	1 cut(s)	121
FaiI	YATR	5 cut(s)	47, 54, 66, 113, 119
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	167, 283
GluI	GCNGC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	3 cut(s)	97, 104, 215
Hpy188I	TCNGA	2 cut(s)	178, 214
Hpy188III	TCNNGA	3 cut(s)	101, 118, 229
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	3 cut(s)	114, 125, 144
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	167, 283
MboII	GAAGA	5 cut(s)	53, 136, 155, 191, 194
MluCI	AATT	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	2 cut(s)	20, 249
MroXI	GAANNNNTTC	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	69, 116
NlaIII	CATG	1 cut(s)	121
PagI	TCATGA	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	97, 104, 215
PkrI	GCNGC	1 cut(s)	152
PspPI	GGNCC	2 cut(s)	178, 256
RseI	CAYNNNNRTG	2 cut(s)	69, 116
SapI	GCTCTTC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	178, 256
SetI	ASST	8 cut(s)	35, 59, 135, 172, 183, 261, 268, 275
SinI	GGWCC	2 cut(s)	178, 256
SmiMI	CAYNNNNRTG	2 cut(s)	69, 116
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	167, 283
TasI	AATT	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	97, 104, 215
TseI	GCWGC	1 cut(s)	150
TspDTI	ATGAA	4 cut(s)	53, 87, 106, 134
VpaK11BI	GGWCC	2 cut(s)	178, 256
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	2 cut(s)	167, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.