Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003583

Physical Location & Seq

Genomic Coordinates Reverse (-)

35359082 .. 35367080

Gene Structure 7999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1243500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAGTACAAGAAAAGAGGACGTGATTGCCATGGCAGCTTGACTATCTATCGCTTCAAAGGTGCTGAACTTTCGATGGAAGGGGTGGGTTTGAGTGCTGTCCCATCAGAGGTATGGGAGTCGACTGAGCTCATAAAGGTTGATCTTTCTAGGAATTCCATCCAAGAACTCCCAGTTGAACTTTCATCATGTATCAACCTTCAGACATTAATTTTATCCAGGAACAAGATTACACACTGGCCAGGTGCAATTTTACAGTCGCTTCCTAATCTTTTGTGTATGAAGTTGGACAATAATCCCCTAAGACAGATTCCACCAGGTGGATTTCAAGCAGCCCCTATGCTTCAGATTCTAGATCTAAGTGGTAACGTGGCTTCATTGCCAGAGCATCCCGCATTTTCTAGCTTACCGCATTTGCAGGAGCTTTACCTGAGACAAATGCAGCTAAGAGAAGTTCCATCGGAAGTCTTGAGTTTGCAGCAACTGCGGATCCTTGACTTGAGCCAAAATTCCCTCCAATTGGTTCCAGTGGAGTTCAAAAATCTTGCTTCACTCACTGAGCTGGGCCTATCTGACAATAACATATCGATGCTTTCCCCAGAGGGGTTGCTTGAGCCTAGCTTACAAGCCTTGAGACTTGATGGAAATCCATTAAGAAGGTATGCTACTTTTTCCTCATTTCCTATTAGTCACTGGAAGGTTTGCTATAATTTCGTATTTTTGTGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_1 LRR_5 LRR_8

Protein Analysis

244

Amino Acids

27.32

Weight (kDa)

6.52

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	66 - 123	8.4e-12	Leucine rich repeat
LRR_14	PF23598	114 - 194	9.1e-08	Leucine-rich repeat region
LRR_8	PF13855	137 - 195	1.3e-10	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15410 AT3G15410
fragaria_vesca	FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490
malus_domestica	MD00G1090000.v1.1 MD11G1243500.v1.1 MD11G1243700.v1.1
prunus_persica	Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1
pyrus_communis	pycom11g21400
rosa_chinensis	RchiOBHm_Chr5g0034391
rosa_laevigata	RLG00000009553 RLG00000017429 RLG00000033544
rosa_multiflora	Rmu_sc0000062.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037620 Rroxscaffold_1G00045890
rosa_rugosa	Rorug01G0049900 Rorug04G0280400 Rorug05G0145600
rosa_samantha	Rh1DG151400 Rh2AG335200 Rh4CG178400 Rh5AG237300 Rh5BG238000 Rh5CG268100 Rh5DG245600
rosa_wichuraiana	Rw5G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	3 cut(s)	393, 410, 487
AclWI	GGATC	2 cut(s)	484, 497
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	2 cut(s)	154, 508
AcuI	CTGAAG	2 cut(s)	185, 329
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	4 cut(s)	109, 320, 520, 603
AgsI	TTSAA	4 cut(s)	58, 179, 329, 538
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	3 cut(s)	218, 241, 316
AluBI	AGCT	7 cut(s)	39, 130, 405, 424, 445, 562, 621
AluI	AGCT	7 cut(s)	39, 130, 405, 424, 445, 562, 621
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	427, 628
AlwI	GGATC	2 cut(s)	484, 497
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	2 cut(s)	239, 565
ApeKI	GCWGC	4 cut(s)	36, 332, 442, 478
ApoI	RAATTY	2 cut(s)	154, 508
AseI	ATTAAT	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	565
BalI	TGGCCA	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	132
BarI	GAAGNNNNNNTAC	4 cut(s)	358, 390, 649, 681
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	48, 344, 454, 490
BccI	CCATC	5 cut(s)	70, 112, 167, 466, 635
BciT130I	CCWGG	3 cut(s)	220, 243, 318
BcoDI	GTCTC	2 cut(s)	427, 628
BfaI	CTAG	4 cut(s)	150, 353, 402, 618
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	4 cut(s)	37, 333, 443, 479
BlsI	GCNGC	4 cut(s)	38, 334, 444, 480
Bme1390I	CCNGG	3 cut(s)	220, 243, 318
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	2 cut(s)	491, 525
BmrFI	CCNGG	3 cut(s)	220, 243, 318
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	397, 579
BmuI	ACTGGG	1 cut(s)	167
BpuEI	CTTGAG	4 cut(s)	490, 520, 632, 652
Bsa29I	ATCGAT	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 320, 520, 603
Bse1I	ACTGG	4 cut(s)	173, 242, 527, 698
Bse3DI	GCAATG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	3 cut(s)	220, 243, 318
BseCI	ATCGAT	1 cut(s)	587
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	159, 388
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	4 cut(s)	109, 320, 520, 603
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	3 cut(s)	117, 422, 549
BseNI	ACTGG	4 cut(s)	173, 242, 527, 698
BseXI	GCAGC	4 cut(s)	48, 344, 454, 490
BseYI	CCCAGC	1 cut(s)	562
BshFI	GGCC	2 cut(s)	241, 567
BshVI	ATCGAT	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	4 cut(s)	109, 320, 520, 603
BsmAI	GTCTC	2 cut(s)	427, 628
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	241, 567
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	142, 355, 489
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	3 cut(s)	393, 410, 487
BspANI	GGCC	2 cut(s)	241, 567
BspCNI	CTCAG	3 cut(s)	118, 423, 550
BspDI	ATCGAT	1 cut(s)	587
BspLI	GGNNCC	2 cut(s)	491, 525
BspPI	GGATC	2 cut(s)	484, 497
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	4 cut(s)	173, 242, 527, 698
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	142, 355, 489
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	3 cut(s)	220, 243, 318
Bst4CI	ACNGT	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstDEI	CTNAG	6 cut(s)	126, 302, 359, 431, 446, 558
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	159, 388
BstKTI	GATC	3 cut(s)	145, 358, 492
BstMAI	GTCTC	2 cut(s)	427, 628
BstMBI	GATC	3 cut(s)	142, 355, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 484
BstNI	CCWGG	3 cut(s)	220, 243, 318
BstSCI	CCNGG	3 cut(s)	218, 241, 316
BstV1I	GCAGC	4 cut(s)	48, 344, 454, 490
BstX2I	RGATCY	2 cut(s)	355, 489
BstYI	RGATCY	2 cut(s)	355, 489
Bsu15I	ATCGAT	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	241, 567
BsuTUI	ATCGAT	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	31
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	159, 388
BtsIMutI	CAGTG	4 cut(s)	235, 534, 555, 691
CaiI	CAGNNNCTG	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	565
ClaI	ATCGAT	1 cut(s)	587
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	32, 189
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	6 cut(s)	126, 302, 359, 431, 446, 558
DpnI	GATC	3 cut(s)	144, 357, 491
DpnII	GATC	3 cut(s)	142, 355, 489
DraIII	CACNNNGTG	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	185, 329
EcoICRI	GAGCTC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	3 cut(s)	218, 241, 316
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	35, 192
FaiI	YATR	9 cut(s)	33, 115, 134, 190, 281, 341, 584, 663, 708
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	31, 188
FauI	CCCGC	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	4 cut(s)	37, 333, 443, 479
FokI	GGATG	2 cut(s)	146, 375
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	4 cut(s)	37, 333, 443, 479
FspBI	CTAG	4 cut(s)	150, 353, 402, 618
GluI	GCNGC	4 cut(s)	37, 333, 443, 479
GsaI	CCCAGC	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	241, 567
Hin1II	CATG	2 cut(s)	35, 192
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	119, 310, 349
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	5 cut(s)	109, 204, 348, 463, 574
Hpy188III	TCNNGA	2 cut(s)	353, 469
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	4 cut(s)	74, 209, 651, 691
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	2 cut(s)	22, 369
HpyCH4V	TGCA	4 cut(s)	248, 418, 442, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 484
HpyF3I	CTNAG	6 cut(s)	126, 302, 359, 431, 446, 558
HpySE526I	ACGT	2 cut(s)	22, 369
Hsp92II	CATG	2 cut(s)	35, 192
Kzo9I	GATC	3 cut(s)	142, 355, 489
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	4 cut(s)	48, 344, 454, 490
LweI	GCATC	2 cut(s)	397, 579
MabI	ACCWGGT	1 cut(s)	316
MaeI	CTAG	4 cut(s)	150, 353, 402, 618
MaeII	ACGT	2 cut(s)	22, 369
MaeIII	GTNAC	2 cut(s)	365, 689
MalI	GATC	3 cut(s)	144, 357, 491
MboI	GATC	3 cut(s)	142, 355, 489
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	2 cut(s)	355, 489
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	6 cut(s)	154, 210, 249, 508, 518, 709
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	11, 103, 524, 595, 685
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	3 cut(s)	209, 653, 730
MslI	CAYNNNNRTG	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	241
MspR9I	CCNGG	3 cut(s)	220, 243, 318
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	3 cut(s)	220, 243, 318
MwoI	GCNNNNNNNGC	2 cut(s)	36, 484
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	142, 355, 489
NlaIII	CATG	2 cut(s)	35, 192
NlaIV	GGNNCC	2 cut(s)	491, 525
NmuCI	GTSAC	1 cut(s)	689
PfeI	GAWTC	2 cut(s)	310, 349
PflMI	CCANNNNNTGG	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	38, 334, 444, 480
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	3 cut(s)	218, 241, 316
PspFI	CCCAGC	1 cut(s)	562
PspGI	CCWGG	3 cut(s)	218, 241, 316
PspN4I	GGNNCC	2 cut(s)	491, 525
PspPI	GGNCC	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	355, 489
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	209, 653, 730
SatI	GCNGC	4 cut(s)	37, 333, 443, 479
Sau3AI	GATC	3 cut(s)	142, 355, 489
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	3 cut(s)	220, 243, 318
SduI	GDGCHC	1 cut(s)	132
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	397, 579
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	4 cut(s)	469, 499, 611, 631
SmoI	CTYRAG	4 cut(s)	469, 499, 611, 631
Sse9I	AATT	6 cut(s)	154, 210, 249, 508, 518, 709
SsiI	CCGC	3 cut(s)	393, 410, 487
SspMI	CTAG	4 cut(s)	150, 353, 402, 618
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	218, 241, 316
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	2 cut(s)	25, 372
TaqI	TCGA	3 cut(s)	74, 122, 587
TasI	AATT	6 cut(s)	154, 210, 249, 508, 518, 709
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	310, 349
Tru1I	TTAA	3 cut(s)	209, 653, 730
Tru9I	TTAA	3 cut(s)	209, 653, 730
TscAI	CASTG	4 cut(s)	242, 534, 562, 698
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	4 cut(s)	36, 332, 442, 478
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	4 cut(s)	17, 174, 296, 366
TspRI	CASTG	4 cut(s)	242, 534, 562, 698
Van91I	CCANNNNNTGG	1 cut(s)	320
VspI	ATTAAT	1 cut(s)	209
XapI	RAATTY	2 cut(s)	154, 508
XbaI	TCTAGA	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	4 cut(s)	150, 353, 402, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.