Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003583

Physical Location & Seq

Genomic Coordinates Forward (+)

29496589 .. 29498336

Gene Structure 1748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAGCTGCGCGAAGTCCCATCAGATATCTTGAGTTTGCAGGAACTGCGGATCCTAGACCTTAGCCAAAATTCCCTGCAGTCAGTTCCAGTGGAGTTCAAAAATTTTACTTCACTCACTGAGCTAGGCCTATCTGACAACAACATATCAACACTTCCTCCAGAATTGGGTATACTTGAACCCAGCTTACAGGCCTTAAGACTTGACGGAAATCCATTAAGAAGCATCCGGCGGACGGTTTTAGATAGAGGAACCAAAGCTGTTCTGCAATATCTCAAGGACAAAATCGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_1 LRR_5 LRR_8

Protein Analysis

98

Amino Acids

11.01

Weight (kDa)

5.12

Isoelectric Point (pI)

67.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	7 - 49	5.1e-08	Leucine rich repeat
LRR_8	PF13855	15 - 73	9.4e-11	Leucine rich repeat
LRR_4	PF12799	15 - 53	1.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15410 AT3G15410
fragaria_vesca	FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490
malus_domestica	MD00G1090000.v1.1 MD11G1243500.v1.1 MD11G1243700.v1.1
prunus_persica	Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1
pyrus_communis	pycom11g21400
rosa_chinensis	RchiOBHm_Chr5g0034391
rosa_laevigata	RLG00000009553 RLG00000017429 RLG00000033544
rosa_multiflora	Rmu_sc0000062.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037620 Rroxscaffold_1G00045890
rosa_rugosa	Rorug01G0049900 Rorug04G0280400 Rorug05G0145600
rosa_samantha	Rh1DG151400 Rh2AG335200 Rh4CG178400 Rh5AG237300 Rh5BG238000 Rh5CG268100 Rh5DG245600
rosa_wichuraiana	Rw5G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	172
AccII	CGCG	1 cut(s)	12
AciI	CCGC	2 cut(s)	49, 232
AclWI	GGATC	2 cut(s)	46, 59
AcsI	RAATTY	2 cut(s)	70, 103
AfiI	CCNNNNNNNGG	2 cut(s)	167, 235
AflII	CTTAAG	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	100, 179
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	4 cut(s)	7, 124, 186, 260
AluI	AGCT	4 cut(s)	7, 124, 186, 260
AlwI	GGATC	2 cut(s)	46, 59
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	2 cut(s)	127, 192
ApeKI	GCWGC	2 cut(s)	4, 7
ApoI	RAATTY	2 cut(s)	70, 103
AspLEI	GCGC	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	56, 125
BfmI	CTRYAG	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	196
BisI	GCNGC	2 cut(s)	5, 8
BlsI	GCNGC	2 cut(s)	6, 9
BmiI	GGNNCC	2 cut(s)	53, 253
BmsI	GCATC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	52, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 235
Bse1I	ACTGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	167, 235
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	129, 194
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	167, 235
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	129, 194
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	49, 232
BspANI	GGCC	2 cut(s)	129, 194
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	53, 253
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	2 cut(s)	46, 59
BspTI	CTTAAG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	51
BssNAI	GTATAC	1 cut(s)	173
Bst1107I	GTATAC	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	62, 120
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	77
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BstZ17I	GTATAC	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	129, 194
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	96, 117
CaiI	CAGNNNCTG	1 cut(s)	46
CfoI	GCGC	1 cut(s)	12
CviJI	RGCY	7 cut(s)	7, 66, 124, 129, 186, 194, 260
CviKI_1	RGCY	7 cut(s)	7, 66, 124, 129, 186, 194, 260
DdeI	CTNAG	2 cut(s)	62, 120
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	247
Eco147I	AGGCCT	2 cut(s)	129, 194
Eco32I	GATATC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	28
FaiI	YATR	2 cut(s)	146, 173
FaqI	GGGAC	1 cut(s)	2
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	5, 8
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	5, 8
FspBI	CTAG	2 cut(s)	56, 125
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	5, 8
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	129, 194
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	25, 136
Hpy188III	TCNNGA	2 cut(s)	31, 161
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	4, 40, 79, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	62, 120
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	7 cut(s)	26, 89, 102, 174, 176, 196, 242
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	56, 125
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	3 cut(s)	70, 103, 164
MnlI	CCTC	2 cut(s)	168, 242
MseI	TTAA	2 cut(s)	197, 218
MspA1I	CMGCKG	1 cut(s)	7
MspCI	CTTAAG	1 cut(s)	196
MspI	CCGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	2 cut(s)	53, 253
PceI	AGGCCT	2 cut(s)	129, 194
PkrI	GCNGC	2 cut(s)	6, 9
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	53, 253
PsrI	GAACNNNNNNTAC	2 cut(s)	171, 203
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	197, 218
SatI	GCNGC	2 cut(s)	5, 8
Sau3AI	GATC	1 cut(s)	51
SetI	ASST	5 cut(s)	9, 63, 126, 188, 262
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	77
SmlI	CTYRAG	3 cut(s)	31, 196, 275
SmoI	CTYRAG	3 cut(s)	31, 196, 275
Sse9I	AATT	3 cut(s)	70, 103, 164
SseBI	AGGCCT	2 cut(s)	129, 194
SsiI	CCGC	2 cut(s)	49, 232
SspMI	CTAG	2 cut(s)	56, 125
StuI	AGGCCT	2 cut(s)	129, 194
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	3 cut(s)	70, 103, 164
Tru1I	TTAA	2 cut(s)	197, 218
Tru9I	TTAA	2 cut(s)	197, 218
TscAI	CASTG	2 cut(s)	96, 124
TseI	GCWGC	2 cut(s)	4, 7
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	96, 124
Vha464I	CTTAAG	1 cut(s)	196
XapI	RAATTY	2 cut(s)	70, 103
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	2 cut(s)	56, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.