Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003583

Physical Location & Seq

Genomic Coordinates Forward (+)

31662631 .. 31670938

Gene Structure 8308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG151400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGTTTGTGAAGTTGGGAAATGGAGGAAGGTTTCACTTTGCTATATTCCATAGGTTTCTTCATAACACTACACTAATCTTATCCAGAAACAAGATTAAAGAGTGGCCAGGTGCAATTTTAAGCTCGCTTCGTAATCTTTTGTGTTTGAAGCTGGACAATAATCCACTAAGACAGATACCATCAGATGGATTCCAAGTAACCCCTATGCTTCAGATTCTGGATCTAAATGGTAATGCAGCTTTGTTACCAGAGCACCATGTATTTTCTAGCTTACAGTATCTGCAAGAGCTTTTATCTGAGGAGTTCAAAAATTTTACTTCACTCACTGAGCTAGGCCTATCTGACAACAACATATCAACACTTCCTCCAGATCGAATTGCTCCTAGAGTGCAAAGGAATCTTCTATCTCTTCTGATGGAGAGGAATCAAGGGAATCTCGGTTGGGTTGTTGGTAATGGATGGGATGTTGCTTTGGGTTGCTACTGGGTTTGTTGCTTTGGGTTGCATAGGGTTGCTGCTGGGTCAAGAGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_1 LRR_5 LRR_8

Protein Analysis

179

Amino Acids

20.2

Weight (kDa)

7.75

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	24 - 79	4e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15410 AT3G15410
fragaria_vesca	FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490
malus_domestica	MD00G1090000.v1.1 MD11G1243500.v1.1 MD11G1243700.v1.1
prunus_persica	Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1
pyrus_communis	pycom11g21400
rosa_chinensis	RchiOBHm_Chr5g0034391
rosa_laevigata	RLG00000009553 RLG00000017429 RLG00000033544
rosa_multiflora	Rmu_sc0000062.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037620 Rroxscaffold_1G00045890
rosa_rugosa	Rorug01G0049900 Rorug04G0280400 Rorug05G0145600
rosa_samantha	Rh1DG151400 Rh2AG335200 Rh4CG178400 Rh5AG237300 Rh5BG238000 Rh5CG268100 Rh5DG245600
rosa_wichuraiana	Rw5G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	151, 310
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	7 cut(s)	126, 154, 242, 273, 292, 334, 537
AluI	AGCT	7 cut(s)	126, 154, 242, 273, 292, 334, 537
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	2 cut(s)	220, 283
AoxI	GGCC	2 cut(s)	107, 337
ApeKI	GCWGC	2 cut(s)	239, 518
ApoI	RAATTY	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	251, 505
BccI	CCATC	4 cut(s)	182, 190, 412, 456
BciT130I	CCWGG	1 cut(s)	111
BfaI	CTAG	4 cut(s)	270, 335, 387, 538
BisI	GCNGC	2 cut(s)	240, 519
BlsI	GCNGC	2 cut(s)	241, 520
Bme1390I	CCNGG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	496
BmuI	ACTGGG	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	467, 472
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	291, 321
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	251, 505
BseYI	CCCAGC	1 cut(s)	521
BshFI	GGCC	2 cut(s)	109, 339
BsiHKAI	GWGCWC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	2 cut(s)	109, 339
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	223, 373
BspANI	GGCC	2 cut(s)	109, 339
BspCNI	CTCAG	2 cut(s)	292, 322
BspPI	GGATC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	491
BssMI	GATC	2 cut(s)	223, 373
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	170, 300, 330
BstF5I	GGATG	2 cut(s)	467, 472
BstKTI	GATC	2 cut(s)	226, 376
BstMBI	GATC	2 cut(s)	223, 373
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	251, 505
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	109, 339
BtsCI	GGATG	2 cut(s)	467, 472
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	2 cut(s)	220, 283
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	9 cut(s)	109, 126, 154, 242, 273, 292, 334, 339, 537
CviKI_1	RGCY	9 cut(s)	109, 126, 154, 242, 273, 292, 334, 339, 537
DdeI	CTNAG	3 cut(s)	170, 300, 330
DpnI	GATC	2 cut(s)	225, 375
DpnII	GATC	2 cut(s)	223, 373
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	1 cut(s)	263
FaiI	YATR	7 cut(s)	47, 54, 66, 209, 261, 356, 510
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	240, 519
FokI	GGATG	2 cut(s)	474, 479
Fsp4HI	GCNGC	2 cut(s)	240, 519
FspBI	CTAG	4 cut(s)	270, 335, 387, 538
GluI	GCNGC	2 cut(s)	240, 519
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	109, 339
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	5 cut(s)	192, 217, 400, 427, 436
Hpy188I	TCNGA	5 cut(s)	187, 216, 301, 346, 417
Hpy188III	TCNNGA	4 cut(s)	87, 221, 371, 528
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	5 cut(s)	116, 239, 286, 394, 508
HpyF3I	CTNAG	3 cut(s)	170, 300, 330
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	223, 373
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	96, 100, 123, 140, 206, 264, 384, 472, 507
Lsp1109I	GCAGC	2 cut(s)	251, 505
MaeI	CTAG	4 cut(s)	270, 335, 387, 538
MaeIII	GTNAC	2 cut(s)	199, 246
MalI	GATC	2 cut(s)	225, 375
MboI	GATC	2 cut(s)	223, 373
MboII	GAAGA	3 cut(s)	53, 395, 404
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	3 cut(s)	117, 313, 378
MluNI	TGGCCA	1 cut(s)	109
MnlI	CCTC	4 cut(s)	20, 295, 378, 417
Mox20I	TGGCCA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	2 cut(s)	99, 122
Msp20I	TGGCCA	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	223, 373
NlaIII	CATG	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	339
PfeI	GAWTC	5 cut(s)	192, 217, 400, 427, 436
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	241, 520
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	109
PstNI	CAGNNNCTG	2 cut(s)	220, 283
PsuI	RGATCY	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	99, 122
SatI	GCNGC	2 cut(s)	240, 519
Sau3AI	GATC	2 cut(s)	223, 373
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	258
Sse9I	AATT	3 cut(s)	117, 313, 378
SseBI	AGGCCT	1 cut(s)	339
SspMI	CTAG	4 cut(s)	270, 335, 387, 538
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	376
TasI	AATT	3 cut(s)	117, 313, 378
TfiI	GAWTC	5 cut(s)	192, 217, 400, 427, 436
Tru1I	TTAA	2 cut(s)	99, 122
Tru9I	TTAA	2 cut(s)	99, 122
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	2 cut(s)	239, 518
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	313
XspI	CTAG	4 cut(s)	270, 335, 387, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.