Rorug04G0280400

Leucine-rich repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003583
Physical Location & Seq
Reverse (-)
45343923 .. 45344719
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0280400.1

Sequence Viewer

Length: 384 bp
ATGTGTATCCAGAATTTGAAAATGGCATCGGGTCAGCTATTTCTAAAGCCTACAAATGCTTGCTTTCTCAGGCAATATCGATCTGATGAAATATCAACGGTGAAGGTCGAGCACCAAAAGAGCGAGGACGCCTCAAGGCCACCACATACTTCCCCAAAGCCTGTTTCCAAGAATGCCAAAAGTGACCAAAAGAAGAAAGGAAGGAACAAGAAGAGTGGCAAAGGCGGAGGCGCTGTTTTCCGCATTAATGGGAACACCATTAACGGAGGCAAAGCTGACAAGGCTGGAGTTTTCGGCTTTGGGAATAAGTATATAGGCCACAAGAAACGAGAGGAAGAAGAATCCAGTGAAGAAGAAAGCGACTCCAGTGAAGATGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_1 LRR_5 LRR_8

Protein Analysis

127

Amino Acids

13.99

Weight (kDa)

9.21

Isoelectric Point (pI)

60.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 225, 241
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 129
AgsI TTSAA 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 148, 180
AluBI AGCT 2 cut(s) 37, 275
AluI AGCT 2 cut(s) 37, 275
Alw21I GWGCWC 1 cut(s) 114
AoxI GGCC 2 cut(s) 137, 316
ApoI RAATTY 1 cut(s) 13
AseI ATTAAT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 114
BciVI GTATCC 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 234
BfuI GTATCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpmI CTGGAG 2 cut(s) 306, 349
BpuEI CTTGAG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse1I ACTGG 2 cut(s) 345, 366
BseCI ATCGAT 1 cut(s) 79
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 345, 366
BshFI GGCC 2 cut(s) 139, 318
BshVI ATCGAT 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 2 cut(s) 139, 318
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 2 cut(s) 225, 241
BspANI GGCC 2 cut(s) 139, 318
BspCNI CTCAG 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 79
BsrI ACTGG 2 cut(s) 345, 366
BssMI GATC 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 281
Bsu15I ATCGAT 1 cut(s) 79
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 139, 318
BsuTUI ATCGAT 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 352, 373
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 79
CseI GACGC 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviJI RGCY 8 cut(s) 37, 49, 139, 160, 275, 284, 297, 318
CviKI_1 RGCY 8 cut(s) 37, 49, 139, 160, 275, 284, 297, 318
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EciI GGCGGA 1 cut(s) 240
FaiI YATR 3 cut(s) 147, 312, 314
GlaI GCGC 1 cut(s) 232
GsuI CTGGAG 2 cut(s) 306, 349
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 139, 318
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 129
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 2 cut(s) 341, 362
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 97, 195
HpyCH4III ACNGT 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 129
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 23, 55, 174, 270, 358, 379
LweI GCATC 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 7 cut(s) 205, 223, 347, 350, 362, 365, 383
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 13
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 6 cut(s) 118, 142, 221, 260, 325, 370
MseI TTAA 2 cut(s) 246, 261
Mva1269I GAATGC 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 182
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 341
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PshBI ATTAAT 1 cut(s) 246
SaqAI TTAA 2 cut(s) 246, 261
Sau3AI GATC 1 cut(s) 80
SchI GAGTC 1 cut(s) 356
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 39, 108, 277
SfaNI GCATC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 1 cut(s) 13
SsiI CCGC 2 cut(s) 225, 241
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 79, 108
TasI AATT 1 cut(s) 13
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 246, 261
Tru9I TTAA 2 cut(s) 246, 261
TscAI CASTG 2 cut(s) 352, 373
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 2 cut(s) 352, 373
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.