RchiOBHm_Chr5g0034391

Leucine-rich repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
28262564 .. 28271619
9056 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31340

Sequence Viewer

Length: 1752 bp
ATGGATCGGGTCATCAAAGCCGCCAGAGCCTCCGGTTCTCTCAACCTTTCAAGTCGCTCTCTCAGGTTCGTGCCCGATGAGGTATACAAAAGCGTGAATGCGGTTGGTGAAGACGAGAAGTGGTGGGAGGCTGTGGAGCTACACAAGCTGATTCTAGCTCATAATGAAATTGAATTGCTCAAAGATGAGCTGAGGAATTTGCCTCTACTGACTGTGTTGAATGTCAGCCACAATAAACTTTCCGAGCTTCCGGCGGCAATTGGAGAGCTTACCATGCTGAAATCGTTAGACGTGTCATTCAACTCGATTCTAGAGCTGCCTGAGGAAATTGGATCAGCAACTGCTCTTGTCAAATTTGATTGTTCAAATAATCAGCTTAAGGACCTCCCAAACTCACTTGGGAGATGCTCAGATCTATCAGATTTCAAGGCATCAAACAATGTTATCATCAGCTTGCCAGAAGATCTAGCAAATTGCTCAAAATTGATGAAATTGGATGTGGAGGGAAACAAGTTAACAAACCTATCTGAGAAGTTGATTGGATCGTGGACTTTGCTTACAGAACTCAATGCATCAAAAAATCTGCTGAGTGGAATACCAGAGAATATTGGAAGCCTTTCTCGTCTTATTCGTCTTGACCTTCACCAGAACAAAATTTCAGCGATCCCAGTTTCAATAAGGGGTTGTTGTTCCCTTGCGGAGGTCCACATGGGGAATAATGCACTCTCTACTTTACCATCAGAGATGGGGGAACTTTCTCGCCTAGGAACTCTAGATCTGCAATCAAACCAGTTGAAGGAGTATCCTGTGGAGGCATGTAAATTGCGTCTTTCATTATTGAATCTTTCAAACAATTCATTGTCTGGATTGCCCCCTGAATTGGGCAAGATGACTACCTTGCGAAGACTTTTACTTACCGGAAACCCAATACGAACTCTACGAAGTACATTGTTGTCTGGACCAACACCTACTTTATTGAAGTATCTGCGAAGTAGGCTTTCTCAGAATGAAGATCCTGAAGCTTCAACTACAACAAAAGAGGATGTGATTGCCATGGCAGCTCGATTGTCTATTGCTTCAAAGGAACTTTCTATGGAAGGGCTGGGTTTGAGTTCTGTCCCATCAGAAGTATGGGAATCGAGTGAGGTCATAAAAGTCGATCTAACTAGGAATTCCATTGAAGAGCTCCCAATTGAACTTTCTTCATGCACCCACCTCCAGACACTAATCTTGTCCAGAAACAAGATTAAAGAGTGGCCAGGTGCAATTTTAAGCTCACTTCGTAATCTTTTGTGTTTGAAGCTGGACAATAATCCACTAAGACAGATACCATCAGATGGATTCCAAGCAACCCCCATGCTTCAGATTCTGGATCTAAGTGGTAATGCAGCTTCGTTACCAGAACACCCTGCATTTTCTAGCTTACCGCATCTGCTAGAGCTTTACCTGAGACGAATGCAGCTACGCGAAGTCCCATCAGATATCTTGAGTTTGCAGCAACTGCGGATCCTAGACCTCAGCCAAAATTCCCTGCAGTCAGTTCCAGTGGAGTTAAAATTTTTTACTTCACTCACTGAGCTAGGCCTATCTGACAACAACATATCAACACTTCCTCCAGAATTGGGTATGCTTGAACCCAACTTACAGGCCTTAAGACTTGACGGAAATCCATTAAGAAGCATCCGGCGGACGGTTTTAGATAGAGGAACCAAAGCTGTTCTGCAATATCTCAAGGACAAAATCGTGGAATGA
Functional Annotation

Protein Analysis

583

Amino Acids

64.33

Weight (kDa)

5.72

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 45 - 116 9.4e-07 Leucine-rich repeat region
LRR_8 PF13855 46 - 103 2.9e-07 Leucine rich repeat
LRR_8 PF13855 161 - 219 8.2e-06 Leucine rich repeat
LRR_14 PF23598 238 - 305 1.7e-06 Leucine-rich repeat region
LRR_14 PF23598 387 - 459 3.5e-06 Leucine-rich repeat region
LRR_8 PF13855 405 - 462 1.5e-09 Leucine rich repeat
LRR_14 PF23598 452 - 550 9.9e-06 Leucine-rich repeat region
LRR_8 PF13855 476 - 534 2e-07 Leucine rich repeat
LRR_8 PF13855 500 - 558 1.8e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1337
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 1467
AciI CCGC 7 cut(s) 21, 101, 254, 698, 1427, 1504, 1687
AclWI GGATC 8 cut(s) 12, 340, 550, 658, 1007, 1380, 1501, 1514
AcoI YGGCCR 1 cut(s) 1256
AcsI RAATTY 6 cut(s) 196, 353, 654, 1171, 1525, 1556
AcuI CTGAAG 2 cut(s) 1038, 1346
AfaI GTAC 1 cut(s) 946
AfiI CCNNNNNNNGG 7 cut(s) 700, 796, 880, 881, 1337, 1622, 1690
AflII CTTAAG 2 cut(s) 377, 1651
AflIII ACRYGT 1 cut(s) 291
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 1258
AjuI GAANNNNNNNTTGG 2 cut(s) 1183, 1215
Alw21I GWGCWC 1 cut(s) 1188
Alw26I GTCTC 1 cut(s) 1444
AlwI GGATC 8 cut(s) 12, 340, 550, 658, 1007, 1380, 1501, 1514
AlwNI CAGNNNCTG 3 cut(s) 341, 1369, 1501
AoxI GGCC 3 cut(s) 1256, 1582, 1647
ApeKI GCWGC 5 cut(s) 316, 1058, 1388, 1459, 1495
ApoI RAATTY 6 cut(s) 196, 353, 654, 1171, 1525, 1556
Asp700I GAANNNNTTC 1 cut(s) 616
AspA2I CCTAGG 1 cut(s) 763
AspS9I GGNCC 3 cut(s) 382, 703, 959
AsuHPI GGTGA 2 cut(s) 119, 635
AvaII GGWCC 3 cut(s) 382, 703, 959
AvrII CCTAGG 1 cut(s) 763
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 75
BalI TGGCCA 1 cut(s) 1258
BamHI GGATCC 1 cut(s) 1506
BanII GRGCYC 1 cut(s) 1188
BarI GAAGNNNNNNTAC 2 cut(s) 1375, 1407
BbsI GAAGAC 2 cut(s) 117, 910
Bbv12I GWGCWC 1 cut(s) 1188
BbvCI CCTCAGC 2 cut(s) 191, 1517
BbvI GCAGC 5 cut(s) 303, 1070, 1400, 1471, 1507
BccI CCATC 6 cut(s) 739, 745, 1129, 1331, 1339, 1483
BciT130I CCWGG 1 cut(s) 1260
BciVI GTATCC 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 1444
BfmI CTRYAG 1 cut(s) 1532
BfrI CTTAAG 2 cut(s) 377, 1651
BfuI GTATCC 1 cut(s) 813
BglII AGATCT 3 cut(s) 412, 463, 775
BisI GCNGC 7 cut(s) 21, 255, 317, 1059, 1389, 1460, 1496
BlnI CCTAGG 1 cut(s) 763
BlsI GCNGC 7 cut(s) 22, 256, 318, 1060, 1390, 1461, 1497
Bme1390I CCNGG 1 cut(s) 1260
Bme18I GGWCC 3 cut(s) 382, 703, 959
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 382, 703, 959
BmiI GGNNCC 2 cut(s) 1508, 1708
BmrFI CCNGG 1 cut(s) 1260
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 5 cut(s) 395, 440, 581, 1438, 1689
BmuI ACTGGG 1 cut(s) 662
BpiI GAAGAC 2 cut(s) 117, 910
BpmI CTGGAG 2 cut(s) 1202, 1599
Bpu10I CCTNAGC 2 cut(s) 191, 1517
BpuEI CTTGAG 2 cut(s) 1507, 1715
BsaJI CCNNGG 2 cut(s) 763, 1053
BsaWI WCCGGW 2 cut(s) 32, 917
BsaXI ACNNNNNCTCC 2 cut(s) 1597, 1627
Bsc4I CCNNNNNNNGG 7 cut(s) 700, 796, 880, 881, 1337, 1622, 1690
Bse1I ACTGG 3 cut(s) 668, 790, 1544
Bse21I CCTNAGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 1260
BseDI CCNNGG 2 cut(s) 763, 1053
BseGI GGATG 3 cut(s) 502, 1048, 1680
BseLI CCNNNNNNNGG 7 cut(s) 700, 796, 880, 881, 1337, 1622, 1690
BseNI ACTGG 3 cut(s) 668, 790, 1544
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 5 cut(s) 303, 1070, 1400, 1471, 1507
BseYI CCCAGC 1 cut(s) 1102
Bsh1236I CGCG 1 cut(s) 1467
BshFI GGCC 3 cut(s) 1258, 1584, 1649
BsiHKAI GWGCWC 1 cut(s) 1188
BsiSI CCGG 4 cut(s) 33, 251, 918, 1684
BslFI GGGAC 2 cut(s) 1103, 1457
BslI CCNNNNNNNGG 7 cut(s) 700, 796, 880, 881, 1337, 1622, 1690
BsmAI GTCTC 1 cut(s) 1444
BsmBI CGTCTC 1 cut(s) 1444
BsmFI GGGAC 2 cut(s) 1103, 1457
BsmI GAATGC 2 cut(s) 103, 1461
BsnI GGCC 3 cut(s) 1258, 1584, 1649
Bsp1286I GDGCHC 2 cut(s) 75, 1188
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 7 cut(s) 21, 101, 254, 698, 1427, 1504, 1687
BspANI GGCC 3 cut(s) 1258, 1584, 1649
BspFNI CGCG 1 cut(s) 1467
BspLI GGNNCC 2 cut(s) 1508, 1708
BspMAI CTGCAG 1 cut(s) 1536
BspPI GGATC 8 cut(s) 12, 340, 550, 658, 1007, 1380, 1501, 1514
BspQI GCTCTTC 1 cut(s) 1176
BspTI CTTAAG 2 cut(s) 377, 1651
BsrI ACTGG 3 cut(s) 668, 790, 1544
BssECI CCNNGG 2 cut(s) 763, 1053
BssNAI GTATAC 1 cut(s) 85
BssT1I CCWWGG 2 cut(s) 763, 1053
Bst1107I GTATAC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 1260
Bst4CI ACNGT 2 cut(s) 214, 1693
Bst6I CTCTTC 1 cut(s) 1176
BstAFI CTTAAG 2 cut(s) 377, 1651
BstAPI GCANNNNNTGC 1 cut(s) 1501
BstC8I GCNNGC 1 cut(s) 455
BstDSI CCRYGG 1 cut(s) 1053
BstENI CCTNNNNNAGG 1 cut(s) 698
BstF5I GGATG 3 cut(s) 502, 1048, 1680
BstFNI CGCG 1 cut(s) 1467
BstMAI GTCTC 1 cut(s) 1444
BstMWI GCNNNNNNNGC 6 cut(s) 26, 145, 274, 994, 1058, 1501
BstNI CCWGG 1 cut(s) 1260
BstNSI RCATGY 1 cut(s) 819
BstSCI CCNGG 1 cut(s) 1258
BstSFI CTRYAG 1 cut(s) 1532
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 1 cut(s) 1467
BstV1I GCAGC 5 cut(s) 303, 1070, 1400, 1471, 1507
BstV2I GAAGAC 2 cut(s) 117, 910
BstX2I RGATCY 6 cut(s) 412, 463, 775, 1012, 1372, 1506
BstYI RGATCY 6 cut(s) 412, 463, 775, 1012, 1372, 1506
BstZ17I GTATAC 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 321
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 3 cut(s) 1258, 1584, 1649
BtgI CCRYGG 1 cut(s) 1053
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 3 cut(s) 502, 1048, 1680
BtsIMutI CAGTG 2 cut(s) 1551, 1572
Cac8I GCNNGC 1 cut(s) 455
CaiI CAGNNNCTG 3 cut(s) 341, 1369, 1501
Cfr13I GGNCC 3 cut(s) 382, 703, 959
CseI GACGC 1 cut(s) 815
Csp6I GTAC 1 cut(s) 945
CviAII CATG 6 cut(s) 274, 709, 816, 1054, 1206, 1357
CviQI GTAC 1 cut(s) 945
EaeI YGGCCR 1 cut(s) 1256
Eam1104I CTCTTC 1 cut(s) 1176
EarI CTCTTC 1 cut(s) 1176
EciI GGCGGA 1 cut(s) 1702
Ecl136II GAGCTC 1 cut(s) 1186
Eco130I CCWWGG 2 cut(s) 763, 1053
Eco147I AGGCCT 2 cut(s) 1584, 1649
Eco24I GRGCYC 1 cut(s) 1188
Eco32I GATATC 1 cut(s) 1483
Eco47I GGWCC 3 cut(s) 382, 703, 959
Eco53kI GAGCTC 1 cut(s) 1186
Eco57I CTGAAG 2 cut(s) 1038, 1346
Eco81I CCTNAGG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 1186
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoO109I RGGNCCY 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 1 cut(s) 1258
EcoRV GATATC 1 cut(s) 1483
EcoT14I CCWWGG 2 cut(s) 763, 1053
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 1188
ErhI CCWWGG 2 cut(s) 763, 1053
Esp3I CGTCTC 1 cut(s) 1444
FaeI CATG 6 cut(s) 277, 712, 819, 1057, 1209, 1360
FaqI GGGAC 2 cut(s) 1103, 1457
FatI CATG 6 cut(s) 273, 708, 815, 1053, 1205, 1356
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 7 cut(s) 21, 255, 317, 1059, 1389, 1460, 1496
FokI GGATG 3 cut(s) 509, 1055, 1667
FriOI GRGCYC 1 cut(s) 1188
Fsp4HI GCNGC 7 cut(s) 21, 255, 317, 1059, 1389, 1460, 1496
GluI GCNGC 7 cut(s) 21, 255, 317, 1059, 1389, 1460, 1496
GsaI CCCAGC 1 cut(s) 1106
GsuI CTGGAG 2 cut(s) 1202, 1599
HaeIII GGCC 3 cut(s) 1258, 1584, 1649
HapII CCGG 4 cut(s) 33, 251, 918, 1684
HgaI GACGC 1 cut(s) 815
Hin1II CATG 6 cut(s) 277, 712, 819, 1057, 1209, 1360
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 6 cut(s) 151, 307, 841, 1136, 1341, 1366
HpaI GTTAAC 1 cut(s) 516
HpaII CCGG 4 cut(s) 33, 251, 918, 1684
HphI GGTGA 2 cut(s) 119, 635
Hpy166II GTNNAC 4 cut(s) 85, 516, 549, 706
Hpy8I GTNNAC 4 cut(s) 85, 516, 549, 706
HpyAV CCTTC 3 cut(s) 650, 790, 1091
HpyCH4III ACNGT 2 cut(s) 214, 1693
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 145, 274, 994, 1058, 1501
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 6 cut(s) 277, 712, 819, 1057, 1209, 1360
KspAI GTTAAC 1 cut(s) 516
LguI GCTCTTC 1 cut(s) 1176
LmnI GCTCC 2 cut(s) 136, 1191
Lsp1109I GCAGC 5 cut(s) 303, 1070, 1400, 1471, 1507
LweI GCATC 5 cut(s) 395, 440, 581, 1438, 1689
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 1395
MboII GAAGA 6 cut(s) 122, 473, 915, 1022, 1193, 1194
MfeI CAATTG 2 cut(s) 258, 1191
MflI RGATCY 6 cut(s) 412, 463, 775, 1012, 1372, 1506
MhlI GDGCHC 2 cut(s) 75, 1188
MlsI TGGCCA 1 cut(s) 1258
MluNI TGGCCA 1 cut(s) 1258
Mox20I TGGCCA 1 cut(s) 1258
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 1 cut(s) 1258
MseI TTAA 7 cut(s) 378, 515, 1248, 1271, 1553, 1652, 1673
Msp20I TGGCCA 1 cut(s) 1258
MspCI CTTAAG 2 cut(s) 377, 1651
MspI CCGG 4 cut(s) 33, 251, 918, 1684
MspR9I CCNGG 1 cut(s) 1260
MunI CAATTG 2 cut(s) 258, 1191
Mva1269I GAATGC 2 cut(s) 103, 1461
MvaI CCWGG 1 cut(s) 1260
MvnI CGCG 1 cut(s) 1467
MwoI GCNNNNNNNGC 6 cut(s) 26, 145, 274, 994, 1058, 1501
NcoI CCATGG 1 cut(s) 1053
NlaIII CATG 6 cut(s) 277, 712, 819, 1057, 1209, 1360
NlaIV GGNNCC 2 cut(s) 1508, 1708
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 819
PceI AGGCCT 2 cut(s) 1584, 1649
PciSI GCTCTTC 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 2 cut(s) 628, 937
PctI GAATGC 2 cut(s) 103, 1461
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 6 cut(s) 151, 307, 841, 1136, 1341, 1366
PflMI CCANNNNNTGG 1 cut(s) 1337
PkrI GCNGC 7 cut(s) 22, 256, 318, 1060, 1390, 1461, 1497
PpuMI RGGWCCY 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 1188
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 1258
PspFI CCCAGC 1 cut(s) 1102
PspGI CCWGG 1 cut(s) 1258
PspN4I GGNNCC 2 cut(s) 1508, 1708
PspPI GGNCC 3 cut(s) 382, 703, 959
PspPPI RGGWCCY 1 cut(s) 382
PsrI GAACNNNNNNTAC 2 cut(s) 1626, 1658
PstI CTGCAG 1 cut(s) 1536
PstNI CAGNNNCTG 3 cut(s) 341, 1369, 1501
PsuI RGATCY 6 cut(s) 412, 463, 775, 1012, 1372, 1506
RsaI GTAC 1 cut(s) 946
RsaNI GTAC 1 cut(s) 945
SacI GAGCTC 1 cut(s) 1188
SapI GCTCTTC 1 cut(s) 1176
SaqAI TTAA 7 cut(s) 378, 515, 1248, 1271, 1553, 1652, 1673
SatI GCNGC 7 cut(s) 21, 255, 317, 1059, 1389, 1460, 1496
Sau96I GGNCC 3 cut(s) 382, 703, 959
ScrFI CCNGG 1 cut(s) 1260
SduI GDGCHC 2 cut(s) 75, 1188
SfaNI GCATC 5 cut(s) 395, 440, 581, 1438, 1689
SfcI CTRYAG 1 cut(s) 1532
SinI GGWCC 3 cut(s) 382, 703, 959
SmlI CTYRAG 4 cut(s) 377, 1486, 1651, 1730
SmoI CTYRAG 4 cut(s) 377, 1486, 1651, 1730
SseBI AGGCCT 2 cut(s) 1584, 1649
SsiI CCGC 7 cut(s) 21, 101, 254, 698, 1427, 1504, 1687
SspI AATATT 1 cut(s) 607
SstI GAGCTC 1 cut(s) 1188
StuI AGGCCT 2 cut(s) 1584, 1649
StyD4I CCNGG 1 cut(s) 1258
StyI CCWWGG 2 cut(s) 763, 1053
TaaI ACNGT 2 cut(s) 214, 1693
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 305, 1063, 1139, 1158
TatI WGTACW 1 cut(s) 944
TauI GCSGC 2 cut(s) 23, 257
TfiI GAWTC 6 cut(s) 151, 307, 841, 1136, 1341, 1366
Tru1I TTAA 7 cut(s) 378, 515, 1248, 1271, 1553, 1652, 1673
Tru9I TTAA 7 cut(s) 378, 515, 1248, 1271, 1553, 1652, 1673
TscAI CASTG 2 cut(s) 1551, 1579
TseI GCWGC 5 cut(s) 316, 1058, 1388, 1459, 1495
TspDTI ATGAA 6 cut(s) 180, 503, 822, 846, 1023, 1194
TspGWI ACGGA 1 cut(s) 1677
TspRI CASTG 2 cut(s) 1551, 1579
Van91I CCANNNNNTGG 1 cut(s) 1337
Vha464I CTTAAG 2 cut(s) 377, 1651
VpaK11BI GGWCC 3 cut(s) 382, 703, 959
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 6 cut(s) 196, 353, 654, 1171, 1525, 1556
XbaI TCTAGA 2 cut(s) 310, 772
XceI RCATGY 1 cut(s) 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 1128
XmaJI CCTAGG 1 cut(s) 763
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 616
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.