Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003583

Physical Location & Seq

Genomic Coordinates Forward (+)

38794500 .. 38815512

Gene Structure 21013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGGACAATAATCCACTAAGACAGATACCATCAGATGGATTCCAAGCAACCCCTATGCTTCAGATTCTGGATCTAAGTGATAATGCAACTTCGTCACCAGAGCACCCTCTATTTTCTAGCTTAGAGTATCTGCAAGAGCTTTATCTGAGACGAATGCAGCTACACGAAGTCCCATCAGATATCTTGAGTTTGCAACAACCTCGGATCCTAGACTTCAGCCAAAATTCCCTACAGTCGGTTCCAATGTGGATAAACACAAGCCAAATTACTTGCTTTGAAGATGGAGGTCATCATCGACCAAACCGGCATGCTGAGATTTCCAGGGTCATATTTCGAGAACTGGAAAGAATTTCCTGCAGGAAAGATACTTCACCCCAGGAAATACTTGTTATTCGCAAAATTCATCCCTATCTGCCATCTTTCAAGGCAGAGTTTACTGCATCTGTCCCCTTAACACGAATCAGGGACATTGCTCATCGGAATGATATCCCTCATGACCTTAAGCAAGAAATTAAGTATACAATACAAAACAAACTTCACCGCAATGCTGGTCCTGAAGATCTAGTTGCTACAGAAGCTATGCTTGCAAGAATAACCATGAACCCTGGACAATATAATGAAGCATTTGTGGAGCAGTTCAAGATATTCCATCATGAACTCAAAAGACTTTTTCAATGCTGGAAGCAGAATCAAGTAAAGTTCTGGGATCTGATTTGTTGTTCAAGACCATGCAATCAATCCTTGAGTGCTCCGAGAGAAATAATTGCGAAGGGTCTTGAAAGTGGCCTTAGAAATGATGCCTCTGATGCTGCAATAGCTATGCGCCAAAAGTGGCGTCTTTGCGAGATTGGACTTGAGGACTATTCATTCATTCTTCTAAGCAGATTCGCTAATGAGCTTGAAGCTATGGGAGGGGCTCATTGGTTGGCACAAGATCTAAGGTTATCTCGTTGGAAGCCTGAAGAATGTGCTGCTATTGAAAACGACCTCCTTGCCTGGAAATCAAGAGGTCTTTCTGAAACAGAAGCAAGTGAAGATGGCAAAATAATCTGGGGACTAGGGCATAAAGCTACTCTCGATAGAGCCAGGAGGTTAACTGAAGAATATTCTGAAGCACTTCTTCAAATATTTCCCCAAAATGTCCAGGTATTAGGAAAAGCTTTTGGAATACCTGAGAACAGTGTGAGGACATACGCTGAAGCTGAAATTCGTGCTGGTGTAATATTTCAGGTTTCAAAATTGTGTACCCTACTTTTGAAACCACTTAGAACTACCATTGCTTCTCTACGTTGGGATGTTATTGTGCCGGGAGCTGCTATGGGAACATTAGTTCAGGTTGAGAGGATTGTCCCTGGATCAATACCATCAACTGTAGAGGGACCTGTTGTTCTCGTTGTCAACAAAGCAGATGGAGATGAAGAGGAGAAGGTTGTGTTCGTGACATGTGAAGACGATGACAAAGTTGCTGATATAAAAAAACATAACGAAAAATATGTGAAGGGGGTATCTGCCGGTGCAGTTTTACTACTTGCTGATGCAGAAGCACTGAATTCGGGTGCAAAAGCCGCTGCTTGTGGTCATTTAGCTTCTTTGGCAGCAGCATCTGATAAAGTTTTTAGTGACCAAGGGGTACCAGCTTCCTTTAATGTCCCTGCTGGAGCAGTGATACCATTTGGCTCTATGGAACTGGCATTAGGGCAAAGCAAATCCATTGAATCATTCAGAATAGCTAAAATATTTCCAGGCAATGCACGGCTAATTGTTCGTTCAAGTGCTAATGTTGAAGACTTGGCTGGAATGTCGGCTGCTGGACTATATGATTCAATTCCCAATGTTATTAGTGTTTCAAATCCGACAGTATTTGCAAATTCTATAAGCAAAGTGTGGGCTTCACCTTACACTCAGAGGGCAGTTTTGAGCCGTCGAGTTGCCGGTGTACCTCAGAAGGATGCTACGATGGCAATTCTGGTGCTAGGAATGCTTTTACCAGACTTATCGTTTGTGCTTCATACAGTCAGCCCAACAGACCAAGACCATAATTTGGTTGAGGCTGAAATTGCTTCTGACCTTGGTAAAACTTTGGTTTCAGGCACCAGGGGCACACCCTGGCGTATATCGTCTGGAAAATTTGATGGGAATGTGCGCACGTTGGCATTTGCTAATTTCAGTGAGGAACTACTTGGTGCGGGCCCTGCAGACGGGGAGGTTATCCATTTGACTGTAGACTACAGCAAGAAACCATTAACTGTTGATCCAGTTTTCCGGCGGCAGCTTGGTCAGCGCGTCGGTGCAGTGGGATTTTATAGTCCAGACACGTCCACAGCCTCTATAAATATCTCTGTAACTTTGTTCAAGTATATACCTTCAAGATGGGTTGGTAGAAAGAAACCTGATAGCATTTGGGCGAAGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

805

Amino Acids

88.96

Weight (kDa)

6.35

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWD1_pHisD	PF22973	431 - 474	2.1e-07	Alpha-glucan water dikinase, phosphohistidine-like domain
PPDK_N	PF01326	584 - 699	1e-17	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15410 AT3G15410
fragaria_vesca	FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490 FvH4_3g20490
malus_domestica	MD00G1090000.v1.1 MD11G1243500.v1.1 MD11G1243700.v1.1
prunus_persica	Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1 Prupe.4G184800_v2.0.a1
pyrus_communis	pycom11g21400
rosa_chinensis	RchiOBHm_Chr5g0034391
rosa_laevigata	RLG00000009553 RLG00000017429 RLG00000033544
rosa_multiflora	Rmu_sc0000062.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037620 Rroxscaffold_1G00045890
rosa_rugosa	Rorug01G0049900 Rorug04G0280400 Rorug05G0145600
rosa_samantha	Rh1DG151400 Rh2AG335200 Rh4CG178400 Rh5AG237300 Rh5BG238000 Rh5CG268100 Rh5DG245600
rosa_wichuraiana	Rw5G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2144
Acc65I	GGTACC	1 cut(s)	1630
AccB1I	GGYRCC	2 cut(s)	1630, 2090
AccB7I	CCANNNNNTGG	2 cut(s)	35, 2041
AccI	GTMKAC	2 cut(s)	518, 2223
AccII	CGCG	1 cut(s)	2283
AciI	CCGC	4 cut(s)	541, 1566, 2186, 2266
AclWI	GGATC	6 cut(s)	78, 199, 212, 714, 1363, 2246
AcsI	RAATTY	7 cut(s)	223, 348, 399, 1206, 1549, 1867, 2126
AcuI	CTGAAG	7 cut(s)	44, 199, 576, 981, 1119, 1131, 1218
AcyI	GRCGYC	1 cut(s)	835
AfaI	GTAC	3 cut(s)	1246, 1632, 1938
AfiI	CCNNNNNNNGG	4 cut(s)	35, 235, 2041, 2198
AflII	CTTAAG	1 cut(s)	500
AflIII	ACRYGT	2 cut(s)	1442, 2313
AjiI	CACGTC	1 cut(s)	2316
AloI	GAACNNNNNNTCC	4 cut(s)	1314, 1346, 1371, 1403
Alw21I	GWGCWC	2 cut(s)	105, 751
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	6 cut(s)	78, 199, 212, 714, 1363, 2246
AlwNI	CAGNNNCTG	2 cut(s)	67, 1604
AoxI	GGCC	2 cut(s)	784, 2188
ApaI	GGGCCC	1 cut(s)	2192
ApeKI	GCWGC	9 cut(s)	157, 809, 971, 1313, 1568, 1595, 1598, 1805, 2269
ApoI	RAATTY	7 cut(s)	223, 348, 399, 1206, 1549, 1867, 2126
ArsI	GACNNNNNNTTYG	4 cut(s)	820, 852, 1982, 2014
Asp700I	GAANNNNTTC	1 cut(s)	1116
Asp718I	GGTACC	1 cut(s)	1630
AspLEI	GCGC	3 cut(s)	825, 2145, 2283
AspS9I	GGNCC	4 cut(s)	551, 1379, 2188, 2189
AsuC2I	CCSGG	1 cut(s)	1308
AsuHPI	GGTGA	4 cut(s)	87, 363, 530, 1884
AvaII	GGWCC	2 cut(s)	551, 1379
BaeGI	GKGCMC	2 cut(s)	2102, 2192
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	2 cut(s)	1630, 2090
BanII	GRGCYC	2 cut(s)	919, 2192
BbsI	GAAGAC	2 cut(s)	1455, 1791
Bbv12I	GWGCWC	2 cut(s)	105, 751
BbvI	GCAGC	9 cut(s)	169, 796, 958, 1300, 1555, 1607, 1610, 1792, 2281
BceAI	ACGGC	2 cut(s)	1769, 1905
BcgI	CGANNNNNNTGC	6 cut(s)	182, 216, 974, 1008, 1533, 1567
BcnI	CCSGG	1 cut(s)	1308
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	5 cut(s)	117, 209, 563, 1058, 1973
BfmI	CTRYAG	7 cut(s)	230, 355, 570, 1371, 2193, 2220, 2227
BfrI	CTTAAG	1 cut(s)	500
BglII	AGATCT	2 cut(s)	559, 934
Bme18I	GGWCC	2 cut(s)	551, 1379
BmgBI	CACGTC	1 cut(s)	2316
BmgT120I	GGNCC	4 cut(s)	551, 1379, 2188, 2189
BmiI	GGNNCC	6 cut(s)	206, 240, 1380, 1632, 2092, 2190
BmsI	GCATC	6 cut(s)	449, 787, 796, 1525, 1610, 1939
BpiI	GAAGAC	2 cut(s)	1455, 1791
BpmI	CTGGAG	1 cut(s)	1677
BpuEI	CTTGAG	3 cut(s)	205, 763, 875
BpuMI	CCSGG	1 cut(s)	1308
BsaHI	GRCGYC	1 cut(s)	835
BsaJI	CCNNGG	9 cut(s)	200, 321, 375, 604, 1351, 1624, 2068, 2094, 2105
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 235, 2041, 2198
Bse118I	RCCGGY	3 cut(s)	303, 1511, 1931
Bse1I	ACTGG	3 cut(s)	345, 1692, 2255
Bse3DI	GCAATG	4 cut(s)	468, 550, 1275, 1753
BseDI	CCNNGG	9 cut(s)	200, 321, 375, 604, 1351, 1624, 2068, 2094, 2105
BseGI	GGATG	3 cut(s)	403, 1300, 1954
BseLI	CCNNNNNNNGG	4 cut(s)	35, 235, 2041, 2198
BseMI	GCAATG	4 cut(s)	468, 550, 1275, 1753
BseMII	CTCAG	5 cut(s)	137, 303, 1164, 1916, 1955
BseNI	ACTGG	3 cut(s)	345, 1692, 2255
BseRI	GAGGAG	1 cut(s)	1436
BseSI	GKGCMC	2 cut(s)	2102, 2192
BseXI	GCAGC	9 cut(s)	169, 796, 958, 1300, 1555, 1607, 1610, 1792, 2281
BsgI	GTGCAG	2 cut(s)	1536, 2310
Bsh1236I	CGCG	1 cut(s)	2283
BshFI	GGCC	2 cut(s)	786, 2190
BshNI	GGYRCC	2 cut(s)	1630, 2090
BsiHKAI	GWGCWC	2 cut(s)	105, 751
BsiSI	CCGG	5 cut(s)	304, 1307, 1512, 1932, 2263
BslFI	GGGAC	7 cut(s)	155, 431, 479, 1068, 1334, 1392, 1634
BslI	CCNNNNNNNGG	4 cut(s)	35, 235, 2041, 2198
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	7 cut(s)	155, 431, 479, 1068, 1334, 1392, 1634
BsmI	GAATGC	2 cut(s)	159, 1983
BsnI	GGCC	2 cut(s)	786, 2190
Bsp120I	GGGCCC	1 cut(s)	2188
Bsp1286I	GDGCHC	5 cut(s)	105, 751, 919, 2102, 2192
Bsp143I	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
BspACI	CCGC	4 cut(s)	541, 1566, 2186, 2266
BspANI	GGCC	2 cut(s)	786, 2190
BspCNI	CTCAG	5 cut(s)	138, 304, 1165, 1915, 1954
BspFNI	CGCG	1 cut(s)	2283
BspHI	TCATGA	2 cut(s)	493, 652
BspLI	GGNNCC	6 cut(s)	206, 240, 1380, 1632, 2092, 2190
BspMAI	CTGCAG	2 cut(s)	359, 2197
BspPI	GGATC	6 cut(s)	78, 199, 212, 714, 1363, 2246
BspT107I	GGYRCC	2 cut(s)	1630, 2090
BspTI	CTTAAG	1 cut(s)	500
BsrDI	GCAATG	4 cut(s)	468, 550, 1275, 1753
BsrFI	RCCGGY	3 cut(s)	303, 1511, 1931
BsrI	ACTGG	3 cut(s)	345, 1692, 2255
BssAI	RCCGGY	3 cut(s)	303, 1511, 1931
BssECI	CCNNGG	9 cut(s)	200, 321, 375, 604, 1351, 1624, 2068, 2094, 2105
BssMI	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
BssNAI	GTATAC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	835
BssT1I	CCWWGG	2 cut(s)	1624, 2068
Bst1107I	GTATAC	1 cut(s)	519
Bst4CI	ACNGT	7 cut(s)	234, 1181, 1372, 1858, 2014, 2221, 2248
Bst6I	CTCTTC	1 cut(s)	1413
BstACI	GRCGYC	1 cut(s)	835
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	309, 585, 2188
BstF5I	GGATG	3 cut(s)	403, 1300, 1954
BstFNI	CGCG	1 cut(s)	2283
BstHHI	GCGC	3 cut(s)	825, 2145, 2283
BstKTI	GATC	7 cut(s)	73, 207, 562, 709, 937, 1358, 2254
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
BstNSI	RCATGY	2 cut(s)	311, 1446
BstSFI	CTRYAG	7 cut(s)	230, 355, 570, 1371, 2193, 2220, 2227
BstSLI	GKGCMC	2 cut(s)	2102, 2192
BstUI	CGCG	1 cut(s)	2283
BstV1I	GCAGC	9 cut(s)	169, 796, 958, 1300, 1555, 1607, 1610, 1792, 2281
BstV2I	GAAGAC	2 cut(s)	1455, 1791
BstX2I	RGATCY	5 cut(s)	70, 204, 559, 706, 934
BstYI	RGATCY	5 cut(s)	70, 204, 559, 706, 934
BstZ17I	GTATAC	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	786, 2190
BtrI	CACGTC	1 cut(s)	2316
BtsCI	GGATG	3 cut(s)	403, 1300, 1954
BtsI	GCAGTG	2 cut(s)	1668, 2298
BtsIMutI	CAGTG	5 cut(s)	1186, 1544, 1668, 2173, 2298
Cac8I	GCNNGC	3 cut(s)	309, 585, 2188
CaiI	CAGNNNCTG	2 cut(s)	67, 1604
CciI	TCATGA	2 cut(s)	493, 652
CfoI	GCGC	3 cut(s)	825, 2145, 2283
Cfr10I	RCCGGY	3 cut(s)	303, 1511, 1931
Cfr13I	GGNCC	4 cut(s)	551, 1379, 2188, 2189
CseI	GACGC	2 cut(s)	824, 2272
Csp6I	GTAC	3 cut(s)	1245, 1631, 1937
CviAII	CATG	6 cut(s)	308, 494, 598, 653, 729, 1443
CviQI	GTAC	3 cut(s)	1245, 1631, 1937
DpnI	GATC	7 cut(s)	72, 206, 561, 708, 936, 1357, 2253
DpnII	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
Eam1104I	CTCTTC	1 cut(s)	1413
EarI	CTCTTC	1 cut(s)	1413
Eco130I	CCWWGG	2 cut(s)	1624, 2068
Eco24I	GRGCYC	2 cut(s)	919, 2192
Eco32I	GATATC	2 cut(s)	181, 487
Eco47I	GGWCC	2 cut(s)	551, 1379
Eco57I	CTGAAG	7 cut(s)	44, 199, 576, 981, 1119, 1131, 1218
EcoO109I	RGGNCCY	2 cut(s)	1379, 2189
EcoRI	GAATTC	1 cut(s)	1549
EcoRV	GATATC	2 cut(s)	181, 487
EcoT14I	CCWWGG	2 cut(s)	1624, 2068
EcoT38I	GRGCYC	2 cut(s)	919, 2192
ErhI	CCWWGG	2 cut(s)	1624, 2068
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	6 cut(s)	311, 497, 601, 656, 732, 1446
FalI	AAGNNNNNCTT	4 cut(s)	567, 599, 1104, 1136
FaqI	GGGAC	7 cut(s)	155, 431, 479, 1068, 1334, 1392, 1634
FatI	CATG	6 cut(s)	307, 493, 597, 652, 728, 1442
FauI	CCCGC	1 cut(s)	2179
FblI	GTMKAC	2 cut(s)	518, 2223
FokI	GGATG	3 cut(s)	390, 1307, 1961
FriOI	GRGCYC	2 cut(s)	919, 2192
FspAI	RTGCGCAY	1 cut(s)	2144
FspBI	CTAG	5 cut(s)	117, 209, 563, 1058, 1973
FspI	TGCGCA	1 cut(s)	2144
GlaI	GCGC	3 cut(s)	824, 2144, 2282
GsuI	CTGGAG	1 cut(s)	1677
HaeIII	GGCC	2 cut(s)	786, 2190
HapII	CCGG	5 cut(s)	304, 1307, 1512, 1932, 2263
HgaI	GACGC	2 cut(s)	824, 2272
HhaI	GCGC	3 cut(s)	825, 2145, 2283
Hin1I	GRCGYC	1 cut(s)	835
Hin1II	CATG	6 cut(s)	311, 497, 601, 656, 732, 1446
Hin6I	GCGC	3 cut(s)	823, 2143, 2281
HinP1I	GCGC	3 cut(s)	823, 2143, 2281
HincII	GTYRAC	2 cut(s)	1095, 1399
HindII	GTYRAC	2 cut(s)	1095, 1399
HindIII	AAGCTT	1 cut(s)	1158
HinfI	GANTC	7 cut(s)	39, 64, 459, 688, 885, 1715, 1820
HpaI	GTTAAC	1 cut(s)	1095
HpaII	CCGG	5 cut(s)	304, 1307, 1512, 1932, 2263
HphI	GGTGA	4 cut(s)	87, 363, 530, 1884
Hpy166II	GTNNAC	8 cut(s)	435, 519, 1095, 1245, 1399, 1937, 2224, 2319
Hpy8I	GTNNAC	8 cut(s)	435, 519, 1095, 1245, 1399, 1937, 2224, 2319
Hpy99I	CGWCG	2 cut(s)	1926, 2288
HpyAV	CCTTC	6 cut(s)	763, 1420, 1492, 1939, 2373, 2401
HpyCH4III	ACNGT	7 cut(s)	234, 1181, 1372, 1858, 2014, 2221, 2248
HpyCH4IV	ACGT	3 cut(s)	1288, 2147, 2315
HpySE526I	ACGT	3 cut(s)	1288, 2147, 2315
Hsp92I	GRCGYC	1 cut(s)	835
Hsp92II	CATG	6 cut(s)	311, 497, 601, 656, 732, 1446
HspAI	GCGC	3 cut(s)	823, 2143, 2281
KpnI	GGTACC	1 cut(s)	1634
KspAI	GTTAAC	1 cut(s)	1095
Kzo9I	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
LmnI	GCTCC	4 cut(s)	631, 754, 1310, 1658
Lsp1109I	GCAGC	9 cut(s)	169, 796, 958, 1300, 1555, 1607, 1610, 1792, 2281
LweI	GCATC	6 cut(s)	449, 787, 796, 1525, 1610, 1939
MaeI	CTAG	5 cut(s)	117, 209, 563, 1058, 1973
MaeII	ACGT	3 cut(s)	1288, 2147, 2315
MaeIII	GTNAC	4 cut(s)	93, 1438, 1619, 2341
MalI	GATC	7 cut(s)	72, 206, 561, 708, 936, 1357, 2253
MboI	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
MflI	RGATCY	5 cut(s)	70, 204, 559, 706, 934
MhlI	GDGCHC	5 cut(s)	105, 751, 919, 2102, 2192
MmeI	TCCRAC	2 cut(s)	932, 1877
MroXI	GAANNNNTTC	1 cut(s)	1116
MseI	TTAA	6 cut(s)	452, 501, 513, 1094, 1644, 2243
MslI	CAYNNNNRTG	2 cut(s)	480, 543
MspA1I	CMGCKG	1 cut(s)	1568
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	5 cut(s)	304, 1307, 1512, 1932, 2263
Mva1269I	GAATGC	2 cut(s)	159, 1983
MvnI	CGCG	1 cut(s)	2283
NciI	CCSGG	1 cut(s)	1308
NdeII	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
NlaIII	CATG	6 cut(s)	311, 497, 601, 656, 732, 1446
NlaIV	GGNNCC	6 cut(s)	206, 240, 1380, 1632, 2092, 2190
NmuCI	GTSAC	3 cut(s)	93, 1438, 1619
NsbI	TGCGCA	1 cut(s)	2144
NspI	RCATGY	2 cut(s)	311, 1446
PaeI	GCATGC	1 cut(s)	311
PagI	TCATGA	2 cut(s)	493, 652
PciI	ACATGT	1 cut(s)	1442
PctI	GAATGC	2 cut(s)	159, 1983
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	7 cut(s)	39, 64, 459, 688, 885, 1715, 1820
PflMI	CCANNNNNTGG	2 cut(s)	35, 2041
PpuMI	RGGWCCY	1 cut(s)	1379
PscI	ACATGT	1 cut(s)	1442
Psp5II	RGGWCCY	1 cut(s)	1379
PspN4I	GGNNCC	6 cut(s)	206, 240, 1380, 1632, 2092, 2190
PspOMI	GGGCCC	1 cut(s)	2188
PspPI	GGNCC	4 cut(s)	551, 1379, 2188, 2189
PspPPI	RGGWCCY	1 cut(s)	1379
PstI	CTGCAG	2 cut(s)	359, 2197
PstNI	CAGNNNCTG	2 cut(s)	67, 1604
PsuI	RGATCY	5 cut(s)	70, 204, 559, 706, 934
RsaI	GTAC	3 cut(s)	1246, 1632, 1938
RsaNI	GTAC	3 cut(s)	1245, 1631, 1937
RseI	CAYNNNNRTG	2 cut(s)	480, 543
SaqAI	TTAA	6 cut(s)	452, 501, 513, 1094, 1644, 2243
Sau3AI	GATC	7 cut(s)	70, 204, 559, 706, 934, 1355, 2251
Sau96I	GGNCC	4 cut(s)	551, 1379, 2188, 2189
SbfI	CCTGCAGG	1 cut(s)	359
SdaI	CCTGCAGG	1 cut(s)	359
SduI	GDGCHC	5 cut(s)	105, 751, 919, 2102, 2192
SfaNI	GCATC	6 cut(s)	449, 787, 796, 1525, 1610, 1939
SfcI	CTRYAG	7 cut(s)	230, 355, 570, 1371, 2193, 2220, 2227
SinI	GGWCC	2 cut(s)	551, 1379
SmiMI	CAYNNNNRTG	2 cut(s)	480, 543
SmlI	CTYRAG	4 cut(s)	184, 500, 742, 854
SmoI	CTYRAG	4 cut(s)	184, 500, 742, 854
SphI	GCATGC	1 cut(s)	311
Sse8387I	CCTGCAGG	1 cut(s)	359
SsiI	CCGC	4 cut(s)	541, 1566, 2186, 2266
SspI	AATATT	4 cut(s)	1106, 1128, 1224, 1737
SspMI	CTAG	5 cut(s)	117, 209, 563, 1058, 1973
StyI	CCWWGG	2 cut(s)	1624, 2068
TaaI	ACNGT	7 cut(s)	234, 1181, 1372, 1858, 2014, 2221, 2248
TaiI	ACGT	3 cut(s)	1291, 2150, 2318
TaqI	TCGA	4 cut(s)	295, 334, 1077, 1924
TauI	GCSGC	2 cut(s)	1568, 2269
TfiI	GAWTC	7 cut(s)	39, 64, 459, 688, 885, 1715, 1820
Tru1I	TTAA	6 cut(s)	452, 501, 513, 1094, 1644, 2243
Tru9I	TTAA	6 cut(s)	452, 501, 513, 1094, 1644, 2243
TscAI	CASTG	5 cut(s)	1186, 1551, 1668, 2173, 2298
TseFI	GTSAC	3 cut(s)	93, 1438, 1619
TseI	GCWGC	9 cut(s)	157, 809, 971, 1313, 1568, 1595, 1598, 1805, 2269
Tsp45I	GTSAC	3 cut(s)	93, 1438, 1619
TspDTI	ATGAA	8 cut(s)	392, 614, 633, 669, 855, 859, 1431, 1997
TspRI	CASTG	5 cut(s)	1186, 1551, 1668, 2173, 2298
Van91I	CCANNNNNTGG	2 cut(s)	35, 2041
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	551, 1379
XapI	RAATTY	7 cut(s)	223, 348, 399, 1206, 1549, 1867, 2126
XceI	RCATGY	2 cut(s)	311, 1446
XmiI	GTMKAC	2 cut(s)	518, 2223
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	5 cut(s)	117, 209, 563, 1058, 1973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.