AT3G15680

zinc finger (Ran-binding) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011748
Physical Location & Seq
Forward (+)
5314817 .. 5316617
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15680.1

Sequence Viewer

Length: 495 bp
ATGAGCAGACCCGGAGATTGGAACTGCAGGTCATGCAGCCATCTCAACTTCCAGCGCCGTGACTCTTGCCAGCGATGCGGTGACTCTCGTTCCGGCCCCGGTGGAGTTGGTGGCTTAGACTTTGGTAATTTCGGTGGCAGAGCCATGTCTGCTTTCGGATTCACCACCGGCTCCGACGTTCGTCCCGGTGATTGGTACTGCACCGTGGGAAACTGCGGGACACACAACTTCGCCAGTCGCTCCACCTGCTTCAAATGCGGCACTTTCAAGGACGAGACCGGCGCTGGAGGCGGAGGTGGTGGCATCGGCGGTCCGGCCATGTTTGACGCCGACATTATGCGGTCTAGAGTCCCCGGTAACGGTGGTCGCTCTAGCTGGAAATCCGGCGACTGGATTTGCACTAGGATTGGTTGCAATGAGCATAACTTTGCAAGCAGAATGGAATGCTTCAGGTGCAATGCACCAAGGGACTTCAGCAACAGAACCTCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

164

Amino Acids

17.56

Weight (kDa)

8.82

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 61 - 88 9e-06 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 127 - 156 6.9e-09 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 2 cut(s) 18, 254
AciI CCGC 6 cut(s) 78, 216, 258, 291, 309, 340
AcoI YGGCCR 1 cut(s) 315
AcuI CTGAAG 2 cut(s) 433, 457
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 4 cut(s) 18, 192, 359, 390
AgsI TTSAA 2 cut(s) 253, 268
AluBI AGCT 1 cut(s) 375
AluI AGCT 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 2 cut(s) 94, 315
ApeKI GCWGC 1 cut(s) 36
AspLEI GCGC 2 cut(s) 57, 284
AspS9I GGNCC 2 cut(s) 95, 311
AsuC2I CCSGG 4 cut(s) 12, 99, 186, 354
AsuHPI GGTGA 3 cut(s) 92, 154, 200
AvaII GGWCC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 4 cut(s) 12, 99, 186, 354
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 3 cut(s) 345, 372, 402
BfmI CTRYAG 1 cut(s) 25
BfoI RGCGCY 2 cut(s) 58, 285
BfuAI ACCTGC 2 cut(s) 18, 254
BisI GCNGC 2 cut(s) 37, 259
BlsI GCNGC 2 cut(s) 38, 260
Bme1390I CCNGG 4 cut(s) 12, 99, 186, 354
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 95, 311
BmiI GGNNCC 2 cut(s) 97, 172
BmrFI CCNGG 4 cut(s) 12, 99, 186, 354
BmsI GCATC 2 cut(s) 65, 312
BoxI GACNNNNGTC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 306
BpuMI CCSGG 4 cut(s) 12, 99, 186, 354
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 4 cut(s) 97, 204, 352, 464
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 192, 359, 390
Bse118I RCCGGY 2 cut(s) 167, 278
Bse1I ACTGG 2 cut(s) 234, 395
Bse3DI GCAATG 2 cut(s) 421, 463
BseDI CCNNGG 4 cut(s) 97, 204, 352, 464
BseLI CCNNNNNNNGG 4 cut(s) 18, 192, 359, 390
BseMI GCAATG 2 cut(s) 421, 463
BseNI ACTGG 2 cut(s) 234, 395
BseXI GCAGC 1 cut(s) 48
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 2 cut(s) 96, 317
BsiSI CCGG 9 cut(s) 12, 93, 99, 168, 186, 279, 314, 354, 384
BslFI GGGAC 4 cut(s) 168, 232, 335, 482
BslI CCNNNNNNNGG 4 cut(s) 18, 192, 359, 390
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 4 cut(s) 168, 232, 335, 482
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 2 cut(s) 96, 317
Bso31I GGTCTC 1 cut(s) 269
BspACI CCGC 6 cut(s) 78, 216, 258, 291, 309, 340
BspANI GGCC 2 cut(s) 96, 317
BspLI GGNNCC 2 cut(s) 97, 172
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 2 cut(s) 18, 254
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 421, 463
BsrFI RCCGGY 2 cut(s) 167, 278
BsrI ACTGG 2 cut(s) 234, 395
BssAI RCCGGY 2 cut(s) 167, 278
BssECI CCNNGG 4 cut(s) 97, 204, 352, 464
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 205, 362
BstACI GRCGYC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 71, 433
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 204
BstH2I RGCGCY 2 cut(s) 58, 285
BstHHI GCGC 2 cut(s) 57, 284
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 7 cut(s) 33, 75, 149, 246, 255, 288, 453
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 4 cut(s) 10, 97, 184, 352
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 96, 317
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 88
BveI ACCTGC 2 cut(s) 18, 254
Cac8I GCNNGC 2 cut(s) 71, 433
CfoI GCGC 2 cut(s) 57, 284
Cfr10I RCCGGY 2 cut(s) 167, 278
Cfr13I GGNCC 2 cut(s) 95, 311
CpoI CGGWCCG 1 cut(s) 311
CseI GACGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 196
CspI CGGWCCG 1 cut(s) 311
CviAII CATG 3 cut(s) 33, 145, 319
CviJI RGCY 7 cut(s) 39, 96, 114, 143, 171, 317, 375
CviKI_1 RGCY 7 cut(s) 39, 96, 114, 143, 171, 317, 375
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 315
EciI GGCGGA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 2 cut(s) 433, 457
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 3 cut(s) 36, 148, 322
FaiI YATR 5 cut(s) 34, 146, 320, 338, 423
FaqI GGGAC 4 cut(s) 168, 232, 335, 482
FatI CATG 3 cut(s) 32, 144, 318
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 37, 259
Fsp4HI GCNGC 2 cut(s) 37, 259
FspBI CTAG 3 cut(s) 345, 372, 402
GlaI GCGC 2 cut(s) 56, 283
GluI GCNGC 2 cut(s) 37, 259
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 2 cut(s) 58, 285
HaeIII GGCC 2 cut(s) 96, 317
HapII CCGG 9 cut(s) 12, 93, 99, 168, 186, 279, 314, 354, 384
HgaI GACGC 1 cut(s) 335
HhaI GCGC 2 cut(s) 57, 284
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 3 cut(s) 36, 148, 322
Hin6I GCGC 2 cut(s) 55, 282
HinP1I GCGC 2 cut(s) 55, 282
HinfI GANTC 4 cut(s) 62, 83, 159, 348
HpaII CCGG 9 cut(s) 12, 93, 99, 168, 186, 279, 314, 354, 384
HphI GGTGA 3 cut(s) 92, 154, 200
Hpy188I TCNGA 2 cut(s) 158, 175
Hpy188III TCNNGA 1 cut(s) 345
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 205, 362
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 8 cut(s) 27, 36, 201, 399, 414, 431, 456, 461
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 75, 149, 246, 255, 288, 453
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 3 cut(s) 36, 148, 322
HspAI GCGC 2 cut(s) 55, 282
LmnI GCTCC 2 cut(s) 176, 245
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 2 cut(s) 65, 312
MaeI CTAG 3 cut(s) 345, 372, 402
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 3 cut(s) 59, 80, 356
MluCI AATT 1 cut(s) 127
MlyI GAGTC 3 cut(s) 56, 77, 357
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 2 cut(s) 281, 287
MspI CCGG 9 cut(s) 12, 93, 99, 168, 186, 279, 314, 354, 384
MspR9I CCNGG 4 cut(s) 12, 99, 186, 354
Mva1269I GAATGC 1 cut(s) 449
MwoI GCNNNNNNNGC 7 cut(s) 33, 75, 149, 246, 255, 288, 453
NciI CCSGG 4 cut(s) 12, 99, 186, 354
NlaIII CATG 3 cut(s) 36, 148, 322
NlaIV GGNNCC 2 cut(s) 97, 172
NmuCI GTSAC 2 cut(s) 59, 80
PaqCI CACCTGC 1 cut(s) 254
PctI GAATGC 1 cut(s) 449
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 38, 260
PleI GAGTC 3 cut(s) 56, 77, 356
PpsI GAGTC 3 cut(s) 56, 77, 356
PshAI GACNNNNGTC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 97, 172
PspPI GGNCC 2 cut(s) 95, 311
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
Rsr2I CGGWCCG 1 cut(s) 311
RsrII CGGWCCG 1 cut(s) 311
SatI GCNGC 2 cut(s) 37, 259
Sau96I GGNCC 2 cut(s) 95, 311
SchI GAGTC 3 cut(s) 56, 77, 357
ScrFI CCNGG 4 cut(s) 12, 99, 186, 354
SetI ASST 7 cut(s) 32, 180, 248, 298, 377, 455, 488
SfaNI GCATC 2 cut(s) 65, 312
SfcI CTRYAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 311
Sse9I AATT 1 cut(s) 127
SsiI CCGC 6 cut(s) 78, 216, 258, 291, 309, 340
SspMI CTAG 3 cut(s) 345, 372, 402
StyD4I CCNGG 4 cut(s) 10, 97, 184, 352
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 205, 362
TaiI ACGT 1 cut(s) 180
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 1 cut(s) 159
TseFI GTSAC 2 cut(s) 59, 80
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 2 cut(s) 59, 80
VpaK11BI GGWCC 1 cut(s) 311
XbaI TCTAGA 1 cut(s) 344
XspI CTAG 3 cut(s) 345, 372, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.