RchiOBHm_Chr2g0136561

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011748
Physical Location & Seq
Reverse (-)
53933125 .. 53934845
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50735

Sequence Viewer

Length: 570 bp
ATGAGCAGACCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGCGACTCGTGCCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGACTGGACTTTGGGGCTTTTAATGGTGGAAGGCTTGGAGGAGGAGGGTCTTCGTTCGGGTTCGGTAGTGCAACTACTGGCTCGGATGTGAGGCCTGGTGACTGGTACTGCGCTGCCGGAAACTGTGGGGCCCACAATTTTGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTTGCTGCTACTGGCGGTGGTGGCGGCTTTGACTCTGAAATGACTCGCTCCCGGGGGGTTTCGGGTTGGGAAATGGCGGGGGTGGTGGTGGTGGTGGTGGTGGTCGGCCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTCGGATGCAACGAGCATAACTTTGCTAGCAGAATGGAATGTTTTAGATGCAATGCCCCAAGAGACACATACTAGAGAGAAGAAATTCTTAATAATCCAATTTTTGGCATTGCTGCTGAGCGAGAAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

189

Amino Acids

19.85

Weight (kDa)

5.91

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 1 cut(s) 60
AciI CCGC 4 cut(s) 253, 306, 315, 368
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 2 cut(s) 212, 429
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 2 cut(s) 268, 283
AjnI CCWGG 4 cut(s) 10, 199, 399, 430
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 491
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 197, 234, 397
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 4 cut(s) 218, 261, 296, 547
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 2 cut(s) 60, 218
AspS9I GGNCC 2 cut(s) 234, 235
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 1 cut(s) 215
AsuNHI GCTAGC 1 cut(s) 460
AvaI CYCGRG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 238
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 4 cut(s) 205, 248, 283, 534
BccI CCATC 1 cut(s) 398
BciT130I CCWGG 4 cut(s) 12, 201, 401, 432
BcnI CCSGG 2 cut(s) 343, 344
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 3 cut(s) 258, 461, 507
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 548
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 6 cut(s) 220, 254, 263, 298, 317, 549
Bme1390I CCNGG 6 cut(s) 12, 201, 343, 344, 401, 432
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 234, 235
BmiI GGNNCC 2 cut(s) 235, 236
BmrFI CCNGG 6 cut(s) 12, 201, 343, 344, 401, 432
BmsI GCATC 2 cut(s) 430, 472
BmtI GCTAGC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 114, 434
Bpu1102I GCTNAGC 1 cut(s) 551
BpuMI CCSGG 2 cut(s) 343, 344
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 342, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 4 cut(s) 114, 187, 212, 307
Bse3DI GCAATG 2 cut(s) 492, 542
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 4 cut(s) 12, 201, 401, 432
BseDI CCNNGG 2 cut(s) 342, 343
BseGI GGATG 4 cut(s) 196, 292, 409, 445
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMI GCAATG 2 cut(s) 492, 542
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 4 cut(s) 114, 187, 212, 307
BseRI GAGGAG 5 cut(s) 111, 114, 117, 159, 162
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 4 cut(s) 205, 248, 283, 534
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 199, 236, 399
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 222, 343
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 3 cut(s) 199, 236, 399
BsoBI CYCGRG 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 238
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 4 cut(s) 253, 306, 315, 368
BspANI GGCC 3 cut(s) 199, 236, 399
BspCNI CTCAG 1 cut(s) 543
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 235, 236
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 464
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 492, 542
BsrI ACTGG 4 cut(s) 114, 187, 212, 307
BssECI CCNNGG 2 cut(s) 342, 343
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 4 cut(s) 12, 201, 401, 432
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 4 cut(s) 38, 71, 250, 462
BstDEI CTNAG 1 cut(s) 551
BstF5I GGATG 4 cut(s) 196, 292, 409, 445
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 2 cut(s) 60, 218
BstMAI GTCTC 1 cut(s) 491
BstMWI GCNNNNNNNGC 5 cut(s) 33, 66, 258, 261, 312
BstNI CCWGG 4 cut(s) 12, 201, 401, 432
BstSCI CCNGG 6 cut(s) 10, 199, 341, 342, 399, 430
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 205, 248, 283, 534
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 3 cut(s) 199, 236, 399
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 4 cut(s) 196, 292, 409, 445
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 4 cut(s) 38, 71, 250, 462
CfoI GCGC 2 cut(s) 60, 218
Cfr13I GGNCC 2 cut(s) 234, 235
Cfr9I CCCGGG 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 430
Csp6I GTAC 2 cut(s) 211, 428
CviAII CATG 1 cut(s) 33
CviJI RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 399
CviKI_1 RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 399
CviQI GTAC 2 cut(s) 211, 428
DdeI CTNAG 1 cut(s) 551
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 4 cut(s) 10, 199, 399, 430
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 36
FaiI YATR 3 cut(s) 34, 452, 504
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FatI CATG 1 cut(s) 32
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 548
FokI GGATG 4 cut(s) 203, 299, 416, 452
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 548
FspBI CTAG 3 cut(s) 258, 461, 507
GlaI GCGC 2 cut(s) 59, 217
GluI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 548
GsuI CTGGAG 2 cut(s) 114, 434
HaeIII GGCC 3 cut(s) 199, 236, 399
HapII CCGG 2 cut(s) 222, 343
HhaI GCGC 2 cut(s) 60, 218
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 2 cut(s) 58, 216
HinP1I GCGC 2 cut(s) 58, 216
HinfI GANTC 3 cut(s) 62, 323, 334
HpaII CCGG 2 cut(s) 222, 343
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 190, 328, 439
Hpy188III TCNNGA 3 cut(s) 52, 93, 413
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 27, 176, 443, 485
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 66, 258, 261, 312
HpyF3I CTNAG 1 cut(s) 551
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 2 cut(s) 58, 216
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 4 cut(s) 205, 248, 283, 534
LweI GCATC 2 cut(s) 430, 472
MabI ACCWGGT 1 cut(s) 430
MaeI CTAG 3 cut(s) 258, 461, 507
MaeIII GTNAC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 2 cut(s) 147, 526
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 3 cut(s) 241, 518, 533
MlyI GAGTC 3 cut(s) 56, 317, 328
MroXI GAANNNNTTC 1 cut(s) 518
MseI TTAA 2 cut(s) 126, 524
MspI CCGG 2 cut(s) 222, 343
MspR9I CCNGG 6 cut(s) 12, 201, 343, 344, 401, 432
MvaI CCWGG 4 cut(s) 12, 201, 401, 432
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 5 cut(s) 33, 66, 258, 261, 312
NciI CCSGG 2 cut(s) 343, 344
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 235, 236
NmuCI GTSAC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 6 cut(s) 220, 254, 263, 298, 317, 549
PleI GAGTC 3 cut(s) 56, 317, 328
PpsI GAGTC 3 cut(s) 56, 317, 328
Psp6I CCWGG 4 cut(s) 10, 199, 399, 430
PspGI CCWGG 4 cut(s) 10, 199, 399, 430
PspN4I GGNNCC 2 cut(s) 235, 236
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 234, 235
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 2 cut(s) 212, 429
RsaNI GTAC 2 cut(s) 211, 428
SaqAI TTAA 2 cut(s) 126, 524
SatI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 548
Sau96I GGNCC 2 cut(s) 234, 235
SchI GAGTC 3 cut(s) 56, 317, 328
ScrFI CCNGG 6 cut(s) 12, 201, 343, 344, 401, 432
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 32, 45, 263, 436
SexAI ACCWGGT 1 cut(s) 430
SfaNI GCATC 2 cut(s) 430, 472
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 3 cut(s) 241, 518, 533
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 4 cut(s) 253, 306, 315, 368
SspMI CTAG 3 cut(s) 258, 461, 507
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 6 cut(s) 10, 199, 341, 342, 399, 430
TaaI ACNGT 1 cut(s) 230
TasI AATT 3 cut(s) 241, 518, 533
TauI GCSGC 2 cut(s) 255, 318
Tru1I TTAA 2 cut(s) 126, 524
Tru9I TTAA 2 cut(s) 126, 524
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 4 cut(s) 218, 261, 296, 547
Tsp45I GTSAC 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 538
XapI RAATTY 1 cut(s) 518
XmaI CCCGGG 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 3 cut(s) 258, 461, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.