Prupe.3G080000_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011748
Physical Location & Seq
Forward (+)
5904278 .. 5906363
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G080000.1

Sequence Viewer

Length: 477 bp
ATGAGCAGGCCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGTGACTCATGCCAACGCTGCGGAGATTCCAAGTCCGGCGTTGACTTTGGGGGGTTTGGTGGAAGAGGAGGAGGAGGATCTTCGTTCGGCTTCATGAGTACCGGCTCAGATGTTAGGCCTGGCGACTGGTACTGCGCTGCTGCCAACTGTGGGGCGCACAATTTTGCCAGCCGCTCCAGCTGCTTCAAATGTGGTGCTTTCAAGGATGACTCTGCCGCTGGTGGAGGCGGAGGCGGCTTTGACTCTGACATGCCACGCTCTCGGGGTTTTGGGTTAGGGCTTGGTGGCGGTGCTGGCGGCGGTGCCCGACCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTGGGGTGCAACGAACACAACTTTGCTAGCAGAATGGAATGTTTTAGATGCAATGCCCCAAGAGACTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

159

Amino Acids

16.52

Weight (kDa)

8.66

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 231
AciI CCGC 8 cut(s) 78, 229, 273, 285, 291, 345, 354, 357
AclWI GGATC 1 cut(s) 142
AfaI GTAC 3 cut(s) 157, 188, 397
AfiI CCNNNNNNNGG 2 cut(s) 207, 405
AgsI TTSAA 2 cut(s) 244, 259
AjnI CCWGG 4 cut(s) 10, 175, 367, 398
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 2 cut(s) 8, 173
ApeKI GCWGC 4 cut(s) 75, 194, 197, 237
AspLEI GCGC 2 cut(s) 194, 214
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 359
BbvI GCAGC 4 cut(s) 62, 181, 184, 224
BccI CCATC 1 cut(s) 366
BciT130I CCWGG 4 cut(s) 12, 177, 369, 400
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 2 cut(s) 429, 475
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 8 cut(s) 76, 195, 198, 229, 238, 273, 292, 355
BlsI GCNGC 8 cut(s) 77, 196, 199, 230, 239, 274, 293, 356
Bme1390I CCNGG 4 cut(s) 12, 177, 369, 400
BmeT110I CYCGRG 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 4 cut(s) 12, 177, 369, 400
BmsI GCATC 1 cut(s) 440
BmtI GCTAGC 1 cut(s) 432
BpmI CTGGAG 2 cut(s) 217, 402
BsaBI GATNNNNATC 1 cut(s) 376
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 405
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 460
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 4 cut(s) 12, 177, 369, 400
BseGI GGATG 2 cut(s) 268, 377
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 207, 405
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 3 cut(s) 138, 141, 144
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 4 cut(s) 62, 181, 184, 224
BshFI GGCC 2 cut(s) 10, 175
BshNI GGYRCC 1 cut(s) 359
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 2 cut(s) 93, 159
BslI CCNNNNNNNGG 2 cut(s) 207, 405
BsmAI GTCTC 1 cut(s) 459
BsnI GGCC 2 cut(s) 10, 175
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 8 cut(s) 78, 229, 273, 285, 291, 345, 354, 357
BspANI GGCC 2 cut(s) 10, 175
BspCNI CTCAG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 158
BssMI GATC 1 cut(s) 134
Bst2UI CCWGG 4 cut(s) 12, 177, 369, 400
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 5 cut(s) 8, 38, 226, 352, 430
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 268, 377
BstHHI GCGC 2 cut(s) 194, 214
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 6 cut(s) 33, 75, 234, 237, 291, 351
BstNI CCWGG 4 cut(s) 12, 177, 369, 400
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 4 cut(s) 10, 175, 367, 398
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 4 cut(s) 62, 181, 184, 224
BstX2I RGATCY 1 cut(s) 134
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 2 cut(s) 10, 175
BtsCI GGATG 2 cut(s) 268, 377
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 5 cut(s) 8, 38, 226, 352, 430
CciI TCATGA 1 cut(s) 150
CfoI GCGC 2 cut(s) 194, 214
Cfr10I RCCGGY 1 cut(s) 158
CsiI ACCWGGT 1 cut(s) 398
Csp6I GTAC 3 cut(s) 156, 187, 396
CviAII CATG 4 cut(s) 33, 66, 151, 307
CviJI RGCY 8 cut(s) 10, 147, 162, 175, 228, 237, 294, 337
CviKI_1 RGCY 8 cut(s) 10, 147, 162, 175, 228, 237, 294, 337
CviQI GTAC 3 cut(s) 156, 187, 396
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
EciI GGCGGA 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 318
EcoRII CCWGG 4 cut(s) 10, 175, 367, 398
FaeI CATG 4 cut(s) 36, 69, 154, 310
FaiI YATR 5 cut(s) 34, 67, 152, 308, 472
FatI CATG 4 cut(s) 32, 65, 150, 306
Fnu4HI GCNGC 8 cut(s) 76, 195, 198, 229, 238, 273, 292, 355
FokI GGATG 2 cut(s) 275, 384
Fsp4HI GCNGC 8 cut(s) 76, 195, 198, 229, 238, 273, 292, 355
FspBI CTAG 2 cut(s) 429, 475
GlaI GCGC 2 cut(s) 193, 213
GluI GCNGC 8 cut(s) 76, 195, 198, 229, 238, 273, 292, 355
GsuI CTGGAG 2 cut(s) 217, 402
HaeIII GGCC 2 cut(s) 10, 175
HapII CCGG 2 cut(s) 93, 159
HhaI GCGC 2 cut(s) 194, 214
Hin1II CATG 4 cut(s) 36, 69, 154, 310
Hin6I GCGC 2 cut(s) 192, 212
HinP1I GCGC 2 cut(s) 192, 212
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 5 cut(s) 62, 83, 266, 299, 467
HpaII CCGG 2 cut(s) 93, 159
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 166, 304
Hpy188III TCNNGA 3 cut(s) 52, 151, 381
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 3 cut(s) 27, 411, 453
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 75, 234, 237, 291, 351
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 4 cut(s) 36, 69, 154, 310
HspAI GCGC 2 cut(s) 192, 212
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 4 cut(s) 62, 181, 184, 224
LweI GCATC 1 cut(s) 440
MabI ACCWGGT 1 cut(s) 398
MaeI CTAG 2 cut(s) 429, 475
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 136
MbiI CCGCTC 1 cut(s) 231
MboI GATC 1 cut(s) 134
MboII GAAGA 2 cut(s) 129, 132
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 1 cut(s) 217
MlyI GAGTC 4 cut(s) 56, 260, 293, 461
MnlI CCTC 8 cut(s) 48, 53, 116, 119, 122, 125, 275, 281
MspA1I CMGCKG 2 cut(s) 237, 275
MspI CCGG 2 cut(s) 93, 159
MspR9I CCNGG 4 cut(s) 12, 177, 369, 400
MvaI CCWGG 4 cut(s) 12, 177, 369, 400
MwoI GCNNNNNNNGC 6 cut(s) 33, 75, 234, 237, 291, 351
NdeII GATC 1 cut(s) 134
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 4 cut(s) 36, 69, 154, 310
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 310
PagI TCATGA 1 cut(s) 150
PceI AGGCCT 1 cut(s) 175
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 8 cut(s) 77, 196, 199, 230, 239, 274, 293, 356
PleI GAGTC 4 cut(s) 56, 260, 293, 461
PpsI GAGTC 4 cut(s) 56, 260, 293, 461
Psp6I CCWGG 4 cut(s) 10, 175, 367, 398
PspGI CCWGG 4 cut(s) 10, 175, 367, 398
PspN4I GGNNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 3 cut(s) 157, 188, 397
RsaNI GTAC 3 cut(s) 156, 187, 396
SatI GCNGC 8 cut(s) 76, 195, 198, 229, 238, 273, 292, 355
Sau3AI GATC 1 cut(s) 134
SchI GAGTC 4 cut(s) 56, 260, 293, 461
ScrFI CCNGG 4 cut(s) 12, 177, 369, 400
SduI GDGCHC 1 cut(s) 364
SetI ASST 5 cut(s) 32, 45, 239, 370, 404
SexAI ACCWGGT 1 cut(s) 398
SfaNI GCATC 1 cut(s) 440
SfcI CTRYAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 217
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 8 cut(s) 78, 229, 273, 285, 291, 345, 354, 357
SspMI CTAG 2 cut(s) 429, 475
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 4 cut(s) 10, 175, 367, 398
TaaI ACNGT 1 cut(s) 206
TasI AATT 1 cut(s) 217
TauI GCSGC 4 cut(s) 231, 275, 294, 357
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 4 cut(s) 75, 194, 197, 237
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 139
XceI RCATGY 1 cut(s) 310
XspI CTAG 2 cut(s) 429, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.