Rroxscaffold_2G00108170

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011748
Physical Location & Seq
Forward (+)
32149218 .. 32150507
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108170.1

Sequence Viewer

Length: 567 bp
ATGAGCAGACCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGCGACTCGTGCCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGACTGGACTTTGGGGCTTTTAATGGTGGAAGGCTCGGAGGAGGAGGGTCTTCGTTCGGGTTCGGTAGTGCAACTTCTGGCTCGGATGTGAGGCCTGGTGACTGGTACTGCGCTGCCGGCAACTGTGGAGCCCACAATTTTGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTTGCTGCTACTGGCGGTGGTGGCGGCTTTGACTCTGAAATGACTCGCTCCCGGGGGGTTTCGGGTTGGGAAATGGCGGTGGTGGCGCTGGTGGTGGTGGTCGGCCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTCGGATGCAACGAGCATAACTTTGCTAGCAGAATGGAATGTTTTAGATGCAATGCCCCAAGAGACACATACTAGAGAGAAGAAATTCTTAATAATCCAATTTTTGGCATTGCTGCTGAGCGAGAAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

188

Amino Acids

19.77

Weight (kDa)

5.91

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 535
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 1 cut(s) 60
AciI CCGC 4 cut(s) 253, 306, 315, 368
AcsI RAATTY 1 cut(s) 515
AfaI GTAC 2 cut(s) 212, 426
AfiI CCNNNNNNNGG 1 cut(s) 535
AgsI TTSAA 2 cut(s) 268, 283
AjnI CCWGG 4 cut(s) 10, 199, 396, 427
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 2 cut(s) 197, 394
ApeKI GCWGC 4 cut(s) 218, 261, 296, 544
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 515
AspLEI GCGC 3 cut(s) 60, 218, 379
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 1 cut(s) 215
AsuNHI GCTAGC 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 342
BanII GRGCYC 1 cut(s) 238
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 4 cut(s) 205, 248, 283, 531
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 4 cut(s) 12, 201, 398, 429
BcnI CCSGG 2 cut(s) 343, 344
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 3 cut(s) 258, 458, 504
BfmI CTRYAG 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 545
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 6 cut(s) 220, 254, 263, 298, 317, 546
Bme1390I CCNGG 6 cut(s) 12, 201, 343, 344, 398, 429
BmeT110I CYCGRG 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 6 cut(s) 12, 201, 343, 344, 398, 429
BmsI GCATC 2 cut(s) 427, 469
BmtI GCTAGC 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 114, 431
Bpu1102I GCTNAGC 1 cut(s) 548
BpuMI CCSGG 2 cut(s) 343, 344
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 342, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 114, 212, 307
Bse3DI GCAATG 2 cut(s) 489, 539
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 4 cut(s) 12, 201, 398, 429
BseDI CCNNGG 2 cut(s) 342, 343
BseGI GGATG 4 cut(s) 196, 292, 406, 442
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMI GCAATG 2 cut(s) 489, 539
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 3 cut(s) 114, 212, 307
BseRI GAGGAG 5 cut(s) 111, 114, 117, 159, 162
BseXI GCAGC 4 cut(s) 205, 248, 283, 531
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 199, 396
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 222, 343
BslI CCNNNNNNNGG 1 cut(s) 535
BsmAI GTCTC 1 cut(s) 488
BsnI GGCC 2 cut(s) 199, 396
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 238
Bsp1720I GCTNAGC 1 cut(s) 548
BspACI CCGC 4 cut(s) 253, 306, 315, 368
BspANI GGCC 2 cut(s) 199, 396
BspCNI CTCAG 1 cut(s) 540
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 489, 539
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 3 cut(s) 114, 212, 307
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 342, 343
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 4 cut(s) 12, 201, 398, 429
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 5 cut(s) 38, 71, 223, 250, 459
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 4 cut(s) 196, 292, 406, 442
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 3 cut(s) 60, 218, 379
BstMAI GTCTC 1 cut(s) 488
BstMWI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 374
BstNI CCWGG 4 cut(s) 12, 201, 398, 429
BstSCI CCNGG 6 cut(s) 10, 199, 341, 342, 396, 427
BstSFI CTRYAG 1 cut(s) 25
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 205, 248, 283, 531
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 2 cut(s) 199, 396
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 4 cut(s) 196, 292, 406, 442
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 5 cut(s) 38, 71, 223, 250, 459
CfoI GCGC 3 cut(s) 60, 218, 379
Cfr10I RCCGGY 1 cut(s) 221
Cfr9I CCCGGG 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 427
Csp6I GTAC 2 cut(s) 211, 425
CviAII CATG 1 cut(s) 33
CviJI RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 396
CviKI_1 RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 396
CviQI GTAC 2 cut(s) 211, 425
DdeI CTNAG 1 cut(s) 548
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 342
EcoRII CCWGG 4 cut(s) 10, 199, 396, 427
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 36
FaiI YATR 3 cut(s) 34, 449, 501
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 545
FokI GGATG 4 cut(s) 203, 299, 413, 449
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 545
FspBI CTAG 3 cut(s) 258, 458, 504
GlaI GCGC 3 cut(s) 59, 217, 378
GluI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 545
GsuI CTGGAG 2 cut(s) 114, 431
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 2 cut(s) 199, 396
HapII CCGG 2 cut(s) 222, 343
HhaI GCGC 3 cut(s) 60, 218, 379
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 3 cut(s) 58, 216, 377
HinP1I GCGC 3 cut(s) 58, 216, 377
HinfI GANTC 3 cut(s) 62, 323, 334
HpaII CCGG 2 cut(s) 222, 343
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 4 cut(s) 143, 190, 328, 436
Hpy188III TCNNGA 3 cut(s) 52, 93, 410
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 27, 176, 440, 482
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 374
HpyF3I CTNAG 1 cut(s) 548
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 3 cut(s) 58, 216, 377
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 233, 344
Lsp1109I GCAGC 4 cut(s) 205, 248, 283, 531
LweI GCATC 2 cut(s) 427, 469
MabI ACCWGGT 1 cut(s) 427
MaeI CTAG 3 cut(s) 258, 458, 504
MaeIII GTNAC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 2 cut(s) 147, 523
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 3 cut(s) 241, 515, 530
MlyI GAGTC 3 cut(s) 56, 317, 328
MroNI GCCGGC 1 cut(s) 221
MroXI GAANNNNTTC 1 cut(s) 515
MseI TTAA 2 cut(s) 126, 521
MspI CCGG 2 cut(s) 222, 343
MspR9I CCNGG 6 cut(s) 12, 201, 343, 344, 398, 429
MvaI CCWGG 4 cut(s) 12, 201, 398, 429
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 374
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 343, 344
NgoMIV GCCGGC 1 cut(s) 221
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 440
PdiI GCCGGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 515
PflMI CCANNNNNTGG 1 cut(s) 535
PkrI GCNGC 6 cut(s) 220, 254, 263, 298, 317, 546
PleI GAGTC 3 cut(s) 56, 317, 328
PpsI GAGTC 3 cut(s) 56, 317, 328
Psp6I CCWGG 4 cut(s) 10, 199, 396, 427
PspGI CCWGG 4 cut(s) 10, 199, 396, 427
PspN4I GGNNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 2 cut(s) 212, 426
RsaNI GTAC 2 cut(s) 211, 425
SaqAI TTAA 2 cut(s) 126, 521
SatI GCNGC 6 cut(s) 219, 253, 262, 297, 316, 545
SchI GAGTC 3 cut(s) 56, 317, 328
ScrFI CCNGG 6 cut(s) 12, 201, 343, 344, 398, 429
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 32, 45, 263, 433
SexAI ACCWGGT 1 cut(s) 427
SfaNI GCATC 2 cut(s) 427, 469
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 3 cut(s) 241, 515, 530
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 4 cut(s) 253, 306, 315, 368
SspMI CTAG 3 cut(s) 258, 458, 504
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 6 cut(s) 10, 199, 341, 342, 396, 427
TaaI ACNGT 1 cut(s) 230
TasI AATT 3 cut(s) 241, 515, 530
TauI GCSGC 2 cut(s) 255, 318
Tru1I TTAA 2 cut(s) 126, 521
Tru9I TTAA 2 cut(s) 126, 521
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 4 cut(s) 218, 261, 296, 544
Tsp45I GTSAC 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 535
XapI RAATTY 1 cut(s) 515
XmaI CCCGGG 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 3 cut(s) 258, 458, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.