Rw2G031290

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011748
Physical Location & Seq
Reverse (-)
51392309 .. 51393088
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031290.1

Sequence Viewer

Length: 510 bp
ATGAGCAGACCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGCGACTCGTGCCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGACTGGACTTTGGGGCTTTTAATGGTGGAAGGCTTGGAGGAGGAGGGTCTTCGTTCGGGTTCGGTAGTGCAACTACTGGCTCGGATGTGAGGCCTGGTGACTGGTACTGCGCTGCCGGCAACTGTGGGGCCCACAATTTTGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTTGCTGCTACTGGCGGTGGTGGAGGCTTTGACTCTGAAATGACTCGCTCCCGGGGGGGTTTCGGGTTGGGAAATGGCGGTGGTGGCGGCGGCGGCGGTGGTGGTCGGCCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTCGGATGCAACGAGCATAACTTTGCTAGCAGAATGGAATGTTTTAGATGCAATGCCCCAAGAGACACATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

169

Amino Acids

17.43

Weight (kDa)

8.66

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 137 - 166 6.7e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 1 cut(s) 60
AciI CCGC 7 cut(s) 253, 306, 369, 378, 381, 384, 387
AfaI GTAC 2 cut(s) 212, 430
AgsI TTSAA 2 cut(s) 268, 283
AjnI CCWGG 4 cut(s) 10, 199, 400, 431
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 197, 234, 398
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 218, 261, 296
AspLEI GCGC 2 cut(s) 60, 218
AspS9I GGNCC 2 cut(s) 234, 235
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 1 cut(s) 215
AsuNHI GCTAGC 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 238
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 205, 248, 283
BccI CCATC 1 cut(s) 399
BciT130I CCWGG 4 cut(s) 12, 201, 402, 433
BcnI CCSGG 2 cut(s) 343, 344
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 3 cut(s) 258, 462, 508
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 7 cut(s) 219, 253, 262, 297, 379, 382, 385
BlsI GCNGC 7 cut(s) 220, 254, 263, 298, 380, 383, 386
Bme1390I CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 234, 235
BmiI GGNNCC 2 cut(s) 235, 236
BmrFI CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
BmsI GCATC 2 cut(s) 431, 473
BmtI GCTAGC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 114, 435
BpuMI CCSGG 2 cut(s) 343, 344
BsaBI GATNNNNATC 1 cut(s) 409
BsaJI CCNNGG 2 cut(s) 342, 343
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 4 cut(s) 114, 187, 212, 307
Bse3DI GCAATG 1 cut(s) 493
Bse8I GATNNNNATC 1 cut(s) 409
BseBI CCWGG 4 cut(s) 12, 201, 402, 433
BseDI CCNNGG 2 cut(s) 342, 343
BseGI GGATG 4 cut(s) 196, 292, 410, 446
BseJI GATNNNNATC 1 cut(s) 409
BseMI GCAATG 1 cut(s) 493
BseNI ACTGG 4 cut(s) 114, 187, 212, 307
BseRI GAGGAG 5 cut(s) 111, 114, 117, 159, 162
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 3 cut(s) 205, 248, 283
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 199, 236, 400
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 222, 343
BsmAI GTCTC 1 cut(s) 492
BsnI GGCC 3 cut(s) 199, 236, 400
BsoBI CYCGRG 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 238
BspACI CCGC 7 cut(s) 253, 306, 369, 378, 381, 384, 387
BspANI GGCC 3 cut(s) 199, 236, 400
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 235, 236
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 465
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 4 cut(s) 114, 187, 212, 307
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 342, 343
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 4 cut(s) 12, 201, 402, 433
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 5 cut(s) 38, 71, 223, 250, 463
BstF5I GGATG 4 cut(s) 196, 292, 410, 446
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 2 cut(s) 60, 218
BstMAI GTCTC 1 cut(s) 492
BstMWI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 375, 384
BstNI CCWGG 4 cut(s) 12, 201, 402, 433
BstSCI CCNGG 6 cut(s) 10, 199, 341, 342, 400, 431
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 205, 248, 283
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 3 cut(s) 199, 236, 400
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 4 cut(s) 196, 292, 410, 446
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 5 cut(s) 38, 71, 223, 250, 463
CfoI GCGC 2 cut(s) 60, 218
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 234, 235
Cfr9I CCCGGG 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 431
Csp6I GTAC 2 cut(s) 211, 429
CviAII CATG 1 cut(s) 33
CviJI RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 400
CviKI_1 RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 400
CviQI GTAC 2 cut(s) 211, 429
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 4 cut(s) 10, 199, 400, 431
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 36
FaiI YATR 3 cut(s) 34, 453, 505
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 7 cut(s) 219, 253, 262, 297, 379, 382, 385
FokI GGATG 4 cut(s) 203, 299, 417, 453
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 7 cut(s) 219, 253, 262, 297, 379, 382, 385
FspBI CTAG 3 cut(s) 258, 462, 508
GlaI GCGC 2 cut(s) 59, 217
GluI GCNGC 7 cut(s) 219, 253, 262, 297, 379, 382, 385
GsuI CTGGAG 2 cut(s) 114, 435
HaeIII GGCC 3 cut(s) 199, 236, 400
HapII CCGG 2 cut(s) 222, 343
HhaI GCGC 2 cut(s) 60, 218
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 2 cut(s) 58, 216
HinP1I GCGC 2 cut(s) 58, 216
HinfI GANTC 3 cut(s) 62, 323, 334
HpaII CCGG 2 cut(s) 222, 343
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 190, 328, 440
Hpy188III TCNNGA 3 cut(s) 52, 93, 414
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 27, 176, 444, 486
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 375, 384
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 2 cut(s) 58, 216
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 3 cut(s) 205, 248, 283
LweI GCATC 2 cut(s) 431, 473
MabI ACCWGGT 1 cut(s) 431
MaeI CTAG 3 cut(s) 258, 462, 508
MaeIII GTNAC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 1 cut(s) 241
MlyI GAGTC 3 cut(s) 56, 317, 328
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 1 cut(s) 126
MspI CCGG 2 cut(s) 222, 343
MspR9I CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
MvaI CCWGG 4 cut(s) 12, 201, 402, 433
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 375, 384
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 343, 344
NgoMIV GCCGGC 1 cut(s) 221
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 235, 236
NmuCI GTSAC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PdiI GCCGGC 1 cut(s) 223
PkrI GCNGC 7 cut(s) 220, 254, 263, 298, 380, 383, 386
PleI GAGTC 3 cut(s) 56, 317, 328
PpsI GAGTC 3 cut(s) 56, 317, 328
Psp6I CCWGG 4 cut(s) 10, 199, 400, 431
PspGI CCWGG 4 cut(s) 10, 199, 400, 431
PspN4I GGNNCC 2 cut(s) 235, 236
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 234, 235
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 2 cut(s) 212, 430
RsaNI GTAC 2 cut(s) 211, 429
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 7 cut(s) 219, 253, 262, 297, 379, 382, 385
Sau96I GGNCC 2 cut(s) 234, 235
SchI GAGTC 3 cut(s) 56, 317, 328
ScrFI CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 32, 45, 263, 437
SexAI ACCWGGT 1 cut(s) 431
SfaNI GCATC 2 cut(s) 431, 473
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 1 cut(s) 241
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 7 cut(s) 253, 306, 369, 378, 381, 384, 387
SspMI CTAG 3 cut(s) 258, 462, 508
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 6 cut(s) 10, 199, 341, 342, 400, 431
TaaI ACNGT 1 cut(s) 230
TasI AATT 1 cut(s) 241
TauI GCSGC 4 cut(s) 255, 381, 384, 387
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 3 cut(s) 218, 261, 296
Tsp45I GTSAC 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 342
XmaI CCCGGG 1 cut(s) 342
XspI CTAG 3 cut(s) 258, 462, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.