MD09G1220800.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011748
Physical Location & Seq
Reverse (-)
25377746 .. 25379737
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1220800.v1.1.491

Sequence Viewer

Length: 483 bp
ATGAGCCGACCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGTGACTCATGCCAACGTTGTGGAGATGCCAAGTCCGGCGTAGACTTCGGGGGCTTCGGTGGAAGAGGAGGAGGATCCTCGTTTGGGTTCATGACTAACGGTTCAGATGTTCGACCTGGTGACTGGTACTGCGCTGCTGGCAACTGTGGAGCCCACAATTTTGCAAGCCGTTCCAGCTGCTTCAAATGTGGTACTTTCATGGATGATTCTGCCGCTGGAGGCGGTTGTGGATTTGACTCTGACATGTCACGCTCCCGGGGTTTTGGGTTAGGACTTGGAGGTGGTGGCGGCATTGGTGAAGCAGGTGGTGGTCGACCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTGGGGTGCAACGAGCACAACTTCGCTAGCAGAATGGAATGCTTTAGATGCAATGCCCCAAGAGACTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

161

Amino Acids

16.81

Weight (kDa)

8.25

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 128 - 157 5e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc36I ACCTGC 2 cut(s) 18, 350
AccI GTMKAC 2 cut(s) 99, 370
AciI CCGC 3 cut(s) 270, 279, 345
AclI AACGTT 1 cut(s) 73
AclWI GGATC 2 cut(s) 126, 139
AfaI GTAC 3 cut(s) 185, 250, 403
AfiI CCNNNNNNNGG 2 cut(s) 141, 411
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 4 cut(s) 10, 172, 373, 404
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 2 cut(s) 126, 139
Ama87I CYCGRG 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 191, 234
AspLEI GCGC 1 cut(s) 191
AsuC2I CCSGG 2 cut(s) 313, 314
AsuHPI GGTGA 2 cut(s) 188, 365
AsuNHI GCTAGC 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 312
BamHI GGATCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 2 cut(s) 178, 221
BccI CCATC 1 cut(s) 372
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 4 cut(s) 12, 174, 375, 406
BcnI CCSGG 2 cut(s) 313, 314
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 2 cut(s) 435, 481
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 2 cut(s) 18, 350
BisI GCNGC 4 cut(s) 192, 235, 270, 346
BlsI GCNGC 4 cut(s) 193, 236, 271, 347
Bme1390I CCNGG 6 cut(s) 12, 174, 313, 314, 375, 406
BmeT110I CYCGRG 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 133, 208
BmrFI CCNGG 6 cut(s) 12, 174, 313, 314, 375, 406
BmsI GCATC 2 cut(s) 73, 446
BmtI GCTAGC 1 cut(s) 438
BpmI CTGGAG 2 cut(s) 294, 408
BpuMI CCSGG 2 cut(s) 313, 314
BsaBI GATNNNNATC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 312, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 411
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 466
Bse8I GATNNNNATC 1 cut(s) 382
BseBI CCWGG 4 cut(s) 12, 174, 375, 406
BseDI CCNNGG 2 cut(s) 312, 313
BseGI GGATG 2 cut(s) 265, 383
BseJI GATNNNNATC 1 cut(s) 382
BseLI CCNNNNNNNGG 2 cut(s) 141, 411
BseMI GCAATG 1 cut(s) 466
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 2 cut(s) 138, 141
BseXI GCAGC 2 cut(s) 178, 221
BsiHKAI GWGCWC 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 2 cut(s) 93, 313
BslI CCNNNNNNNGG 2 cut(s) 141, 411
BsmAI GTCTC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 2 cut(s) 211, 426
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 3 cut(s) 270, 279, 345
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 133, 208
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 2 cut(s) 18, 350
BspOI GCTAGC 1 cut(s) 438
BspPI GGATC 2 cut(s) 126, 139
BsrDI GCAATG 1 cut(s) 466
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 312, 313
BssMI GATC 1 cut(s) 131
Bst2UI CCWGG 4 cut(s) 12, 174, 375, 406
Bst4CI ACNGT 2 cut(s) 158, 203
Bst6I CTCTTC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 4 cut(s) 38, 196, 223, 436
BstF5I GGATG 2 cut(s) 265, 383
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 4 cut(s) 33, 195, 231, 456
BstNI CCWGG 4 cut(s) 12, 174, 375, 406
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 6 cut(s) 10, 172, 311, 312, 373, 404
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 178, 221
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BstYI RGATCY 1 cut(s) 131
BtsCI GGATG 2 cut(s) 265, 383
BveI ACCTGC 2 cut(s) 18, 350
Cac8I GCNNGC 4 cut(s) 38, 196, 223, 436
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 191
Cfr9I CCCGGG 1 cut(s) 312
CsiI ACCWGGT 2 cut(s) 172, 404
Csp6I GTAC 3 cut(s) 184, 249, 402
CviAII CATG 5 cut(s) 33, 66, 148, 256, 301
CviJI RGCY 5 cut(s) 6, 111, 209, 225, 234
CviKI_1 RGCY 5 cut(s) 6, 111, 209, 225, 234
CviQI GTAC 3 cut(s) 184, 249, 402
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 312
EcoRII CCWGG 4 cut(s) 10, 172, 373, 404
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 5 cut(s) 36, 69, 151, 259, 304
FaiI YATR 6 cut(s) 34, 67, 149, 257, 302, 478
FatI CATG 5 cut(s) 32, 65, 147, 255, 300
FblI GTMKAC 2 cut(s) 99, 370
Fnu4HI GCNGC 4 cut(s) 192, 235, 270, 346
FokI GGATG 2 cut(s) 272, 390
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 4 cut(s) 192, 235, 270, 346
FspBI CTAG 2 cut(s) 435, 481
GlaI GCGC 1 cut(s) 190
GluI GCNGC 4 cut(s) 192, 235, 270, 346
GsuI CTGGAG 2 cut(s) 294, 408
HapII CCGG 2 cut(s) 93, 313
HhaI GCGC 1 cut(s) 191
Hin1II CATG 5 cut(s) 36, 69, 151, 259, 304
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HinfI GANTC 4 cut(s) 62, 263, 293, 473
HpaII CCGG 2 cut(s) 93, 313
HphI GGTGA 2 cut(s) 188, 365
Hpy166II GTNNAC 2 cut(s) 100, 371
Hpy188I TCNGA 2 cut(s) 163, 298
Hpy188III TCNNGA 3 cut(s) 52, 148, 387
Hpy8I GTNNAC 2 cut(s) 100, 371
HpyCH4III ACNGT 2 cut(s) 158, 203
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 4 cut(s) 27, 221, 417, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 195, 231, 456
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 5 cut(s) 36, 69, 151, 259, 304
HspAI GCGC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 206, 314
Lsp1109I GCAGC 2 cut(s) 178, 221
LweI GCATC 2 cut(s) 73, 446
MabI ACCWGGT 2 cut(s) 172, 404
MaeI CTAG 2 cut(s) 435, 481
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 3 cut(s) 59, 176, 303
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 1 cut(s) 132
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 211, 426
MluCI AATT 1 cut(s) 214
MlyI GAGTC 3 cut(s) 56, 287, 467
MnlI CCTC 8 cut(s) 48, 53, 116, 119, 122, 145, 269, 329
MspA1I CMGCKG 2 cut(s) 234, 272
MspI CCGG 2 cut(s) 93, 313
MspR9I CCNGG 6 cut(s) 12, 174, 313, 314, 375, 406
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 4 cut(s) 12, 174, 375, 406
MwoI GCNNNNNNNGC 4 cut(s) 33, 195, 231, 456
NciI CCSGG 2 cut(s) 313, 314
NdeII GATC 1 cut(s) 131
NheI GCTAGC 1 cut(s) 434
NlaIII CATG 5 cut(s) 36, 69, 151, 259, 304
NlaIV GGNNCC 2 cut(s) 133, 208
NmuCI GTSAC 3 cut(s) 59, 176, 303
NspI RCATGY 1 cut(s) 304
PagI TCATGA 1 cut(s) 147
PaqCI CACCTGC 1 cut(s) 350
PciI ACATGT 1 cut(s) 300
PctI GAATGC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 4 cut(s) 193, 236, 271, 347
PleI GAGTC 3 cut(s) 56, 287, 467
PpsI GAGTC 3 cut(s) 56, 287, 467
PscI ACATGT 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 73
Psp6I CCWGG 4 cut(s) 10, 172, 373, 404
PspGI CCWGG 4 cut(s) 10, 172, 373, 404
PspN4I GGNNCC 2 cut(s) 133, 208
PstI CTGCAG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 234
RsaI GTAC 3 cut(s) 185, 250, 403
RsaNI GTAC 3 cut(s) 184, 249, 402
SalI GTCGAC 1 cut(s) 369
SatI GCNGC 4 cut(s) 192, 235, 270, 346
Sau3AI GATC 1 cut(s) 131
SchI GAGTC 3 cut(s) 56, 287, 467
ScrFI CCNGG 6 cut(s) 12, 174, 313, 314, 375, 406
SduI GDGCHC 2 cut(s) 211, 426
SetI ASST 9 cut(s) 32, 45, 76, 175, 236, 340, 364, 376, 410
SexAI ACCWGGT 2 cut(s) 172, 404
SfaNI GCATC 2 cut(s) 73, 446
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 314
Sse9I AATT 1 cut(s) 214
SsiI CCGC 3 cut(s) 270, 279, 345
SspMI CTAG 2 cut(s) 435, 481
StyD4I CCNGG 6 cut(s) 10, 172, 311, 312, 373, 404
TaaI ACNGT 2 cut(s) 158, 203
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 169, 370
TasI AATT 1 cut(s) 214
TauI GCSGC 2 cut(s) 272, 348
TfiI GAWTC 1 cut(s) 263
TseFI GTSAC 3 cut(s) 59, 176, 303
TseI GCWGC 2 cut(s) 191, 234
Tsp45I GTSAC 3 cut(s) 59, 176, 303
TspDTI ATGAA 2 cut(s) 136, 244
TspMI CCCGGG 1 cut(s) 312
XceI RCATGY 1 cut(s) 304
XmaI CCCGGG 1 cut(s) 312
XmiI GTMKAC 2 cut(s) 99, 370
XspI CTAG 2 cut(s) 435, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.