RLG00000019541

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011748
Physical Location & Seq
Reverse (-)
53319314 .. 53320256
943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019541

Sequence Viewer

Length: 561 bp
ATGAGCAGACCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGCGACTCGTGCCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGACTGGACTTTGGGGCTTTTAATGGTGGAAGGCTCGGAGGAGGAGGGTCTTCGTTCGGGTTCGGTAGTGCAACTACTGGCTCGGATGTGAGGCCTGGTGACTGGTACTGCACTGCAGGCAACTGTGGGGCCCACAATTTTGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTTGCTGCTACTGGCGGTGGCGGCGGCTTTGACTCTGAAATGACTCGCTCCCGGGGGGGTTTCGGGTTGGGAAATGGCGGTGGTGGCGCTGGTGGTGGTGGACGACCTGGATGGAAATCTGGAGATTGGATTTGTTCGGATGCAACGAGCATAACTTTGCTAGCAGAATGGAATGTTTTAGATGCAATGCCCCAAGAGACACATACTAGAGAGAAGAAATTCTTAATAATCCAATTTTTGGCATTGCTGCTGAGCGAGAAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

187

Amino Acids

19.36

Weight (kDa)

8.09

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 1 cut(s) 60
AciI CCGC 5 cut(s) 253, 306, 312, 315, 369
AcsI RAATTY 1 cut(s) 509
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 2 cut(s) 268, 283
AjnI CCWGG 3 cut(s) 10, 199, 397
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 2 cut(s) 197, 234
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 261, 296, 538
ApoI RAATTY 1 cut(s) 509
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 2 cut(s) 60, 380
AspS9I GGNCC 2 cut(s) 234, 235
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 1 cut(s) 215
AsuNHI GCTAGC 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 238
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 248, 283, 525
BccI CCATC 1 cut(s) 396
BciT130I CCWGG 3 cut(s) 12, 201, 399
BcnI CCSGG 2 cut(s) 343, 344
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 3 cut(s) 258, 452, 498
BfmI CTRYAG 2 cut(s) 25, 219
BfoI RGCGCY 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 6 cut(s) 253, 262, 297, 313, 316, 539
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 6 cut(s) 254, 263, 298, 314, 317, 540
Bme1390I CCNGG 5 cut(s) 12, 201, 343, 344, 399
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 234, 235
BmiI GGNNCC 2 cut(s) 235, 236
BmrFI CCNGG 5 cut(s) 12, 201, 343, 344, 399
BmsI GCATC 2 cut(s) 421, 463
BmtI GCTAGC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 114, 432
Bpu1102I GCTNAGC 1 cut(s) 542
BpuMI CCSGG 2 cut(s) 343, 344
BsaBI GATNNNNATC 1 cut(s) 406
BsaJI CCNNGG 2 cut(s) 342, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 4 cut(s) 114, 187, 212, 307
Bse3DI GCAATG 2 cut(s) 483, 533
Bse8I GATNNNNATC 1 cut(s) 406
BseBI CCWGG 3 cut(s) 12, 201, 399
BseDI CCNNGG 2 cut(s) 342, 343
BseGI GGATG 4 cut(s) 196, 292, 407, 436
BseJI GATNNNNATC 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 2 cut(s) 483, 533
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 4 cut(s) 114, 187, 212, 307
BseRI GAGGAG 5 cut(s) 111, 114, 117, 159, 162
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 3 cut(s) 248, 283, 525
BsgI GTGCAG 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 199, 236
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 2 cut(s) 199, 236
BsoBI CYCGRG 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 238
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 5 cut(s) 253, 306, 312, 315, 369
BspANI GGCC 2 cut(s) 199, 236
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 235, 236
BspMAI CTGCAG 2 cut(s) 29, 223
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 483, 533
BsrI ACTGG 4 cut(s) 114, 187, 212, 307
BssECI CCNNGG 2 cut(s) 342, 343
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 3 cut(s) 12, 201, 399
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 5 cut(s) 38, 71, 223, 250, 453
BstDEI CTNAG 1 cut(s) 542
BstF5I GGATG 4 cut(s) 196, 292, 407, 436
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 2 cut(s) 60, 380
BstMAI GTCTC 1 cut(s) 482
BstMWI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 375
BstNI CCWGG 3 cut(s) 12, 201, 399
BstSCI CCNGG 5 cut(s) 10, 199, 341, 342, 397
BstSFI CTRYAG 2 cut(s) 25, 219
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 248, 283, 525
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 2 cut(s) 199, 236
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 4 cut(s) 196, 292, 407, 436
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 5 cut(s) 38, 71, 223, 250, 453
CfoI GCGC 2 cut(s) 60, 380
Cfr13I GGNCC 2 cut(s) 234, 235
Cfr9I CCCGGG 1 cut(s) 342
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 33
CviJI RGCY 8 cut(s) 122, 139, 186, 199, 236, 252, 261, 318
CviKI_1 RGCY 8 cut(s) 122, 139, 186, 199, 236, 252, 261, 318
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 3 cut(s) 10, 199, 397
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 36
FaiI YATR 3 cut(s) 34, 443, 495
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 253, 262, 297, 313, 316, 539
FokI GGATG 4 cut(s) 203, 299, 414, 443
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 253, 262, 297, 313, 316, 539
FspBI CTAG 3 cut(s) 258, 452, 498
GlaI GCGC 2 cut(s) 59, 379
GluI GCNGC 6 cut(s) 253, 262, 297, 313, 316, 539
GsuI CTGGAG 2 cut(s) 114, 432
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 2 cut(s) 199, 236
HapII CCGG 1 cut(s) 343
HhaI GCGC 2 cut(s) 60, 380
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 2 cut(s) 58, 378
HinP1I GCGC 2 cut(s) 58, 378
HinfI GANTC 3 cut(s) 62, 323, 334
HpaII CCGG 1 cut(s) 343
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 4 cut(s) 143, 190, 328, 430
Hpy188III TCNNGA 3 cut(s) 52, 93, 411
Hpy8I GTNNAC 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 6 cut(s) 27, 176, 216, 221, 434, 476
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 375
HpyF3I CTNAG 1 cut(s) 542
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 2 cut(s) 58, 378
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 3 cut(s) 248, 283, 525
LweI GCATC 2 cut(s) 421, 463
MaeI CTAG 3 cut(s) 258, 452, 498
MaeIII GTNAC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 2 cut(s) 147, 517
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 3 cut(s) 241, 509, 524
MlyI GAGTC 3 cut(s) 56, 317, 328
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 2 cut(s) 126, 515
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 5 cut(s) 12, 201, 343, 344, 399
MvaI CCWGG 3 cut(s) 12, 201, 399
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 375
NciI CCSGG 2 cut(s) 343, 344
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 235, 236
NmuCI GTSAC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 434
PdmI GAANNNNTTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 529
PkrI GCNGC 6 cut(s) 254, 263, 298, 314, 317, 540
PleI GAGTC 3 cut(s) 56, 317, 328
PpsI GAGTC 3 cut(s) 56, 317, 328
Psp6I CCWGG 3 cut(s) 10, 199, 397
PspGI CCWGG 3 cut(s) 10, 199, 397
PspN4I GGNNCC 2 cut(s) 235, 236
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 234, 235
PstI CTGCAG 2 cut(s) 29, 223
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 2 cut(s) 126, 515
SatI GCNGC 6 cut(s) 253, 262, 297, 313, 316, 539
Sau96I GGNCC 2 cut(s) 234, 235
SchI GAGTC 3 cut(s) 56, 317, 328
ScrFI CCNGG 5 cut(s) 12, 201, 343, 344, 399
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 32, 45, 263, 400
SfaNI GCATC 2 cut(s) 421, 463
SfcI CTRYAG 2 cut(s) 25, 219
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 3 cut(s) 241, 509, 524
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 5 cut(s) 253, 306, 312, 315, 369
SspMI CTAG 3 cut(s) 258, 452, 498
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 5 cut(s) 10, 199, 341, 342, 397
TaaI ACNGT 1 cut(s) 230
TasI AATT 3 cut(s) 241, 509, 524
TauI GCSGC 3 cut(s) 255, 315, 318
Tru1I TTAA 2 cut(s) 126, 515
Tru9I TTAA 2 cut(s) 126, 515
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 3 cut(s) 261, 296, 538
Tsp45I GTSAC 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 342
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 529
XapI RAATTY 1 cut(s) 509
XmaI CCCGGG 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 3 cut(s) 258, 452, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.