MD17G1204500.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011748
Physical Location & Seq
Forward (+)
24766824 .. 24769140
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1204500.v1.1.491

Sequence Viewer

Length: 558 bp
ATGGCTCATTACTTCACCATTCCATACTTTGCCTCCAAAATATCCGATAGTGAAGAACATTTCATTTTTCTTAAGATGAGCCGACCAGGAGACTGGAACTGCAGGTCATGCCACCACCTCAACTTCCAGAGGCGTGACTCATGCCAACGTTGTGGAGATGCCAAGTCCGGCGTAGATTTCGGGGGCTTCGGCGGAAGAGGAGGAGGATCCTCGTTTGGGTTCATGACTACCGGCTCAGATGTTCGGCCTGGTGACTGGTACTGCGCTGCTGGCAACTGTGGAGCCCACAATTTTGCAAGCCGTTCCAGCTGCTTCAAATGTGGGGCTTTCAAGGATGATTCTGCCATTAGCGGCGGTGGTGGCTTTGACTCTGACCTGCCACGCTCCCGGGGTTTCGGGTTAGGACTTGGCGGTGGTGGCGGAGGAGGCGGAGCAGGTGGTGGTCGACCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTGGGGTGCAACGAGCACAACTTTGCTAGCAGAATGGAATGCTTTAGATGCAATGCCCCAAGAGACTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

186

Amino Acids

19.67

Weight (kDa)

8.47

Isoelectric Point (pI)

59.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 153 - 182 6.3e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 3 cut(s) 93, 384, 425
AccI GTMKAC 1 cut(s) 445
AciI CCGC 6 cut(s) 192, 351, 354, 411, 420, 429
AclI AACGTT 1 cut(s) 148
AclWI GGATC 2 cut(s) 201, 214
AfaI GTAC 2 cut(s) 260, 478
AfiI CCNNNNNNNGG 2 cut(s) 216, 486
AflII CTTAAG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 316, 331
AjnI CCWGG 4 cut(s) 85, 247, 448, 479
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 2 cut(s) 84, 540
AlwI GGATC 2 cut(s) 201, 214
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 266, 309
AspLEI GCGC 1 cut(s) 266
AsuC2I CCSGG 2 cut(s) 388, 389
AsuHPI GGTGA 2 cut(s) 7, 263
AsuNHI GCTAGC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 387
BamHI GGATCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 253, 296
BccI CCATC 1 cut(s) 447
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 4 cut(s) 87, 249, 450, 481
BcnI CCSGG 2 cut(s) 388, 389
BcoDI GTCTC 2 cut(s) 84, 540
BfaI CTAG 2 cut(s) 510, 556
BfmI CTRYAG 1 cut(s) 100
BfrI CTTAAG 1 cut(s) 71
BfuAI ACCTGC 3 cut(s) 93, 384, 425
BisI GCNGC 3 cut(s) 267, 310, 352
BlsI GCNGC 3 cut(s) 268, 311, 353
Bme1390I CCNGG 6 cut(s) 87, 249, 388, 389, 450, 481
BmeT110I CYCGRG 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 208, 283
BmrFI CCNGG 6 cut(s) 87, 249, 388, 389, 450, 481
BmsI GCATC 2 cut(s) 148, 521
BmtI GCTAGC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 483
BpuMI CCSGG 2 cut(s) 388, 389
BsaBI GATNNNNATC 1 cut(s) 457
BsaJI CCNNGG 2 cut(s) 387, 388
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 486
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 98, 260
Bse3DI GCAATG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 457
BseBI CCWGG 4 cut(s) 87, 249, 450, 481
BseDI CCNNGG 2 cut(s) 387, 388
BseGI GGATG 2 cut(s) 340, 458
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 216, 486
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 98, 260
BseRI GAGGAG 3 cut(s) 213, 216, 438
BseXI GCAGC 2 cut(s) 253, 296
BshFI GGCC 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 3 cut(s) 168, 231, 388
BslI CCNNNNNNNGG 2 cut(s) 216, 486
BsmAI GTCTC 2 cut(s) 84, 540
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 286, 501
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 6 cut(s) 192, 351, 354, 411, 420, 429
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 208, 283
BspMAI CTGCAG 1 cut(s) 104
BspMI ACCTGC 3 cut(s) 93, 384, 425
BspOI GCTAGC 1 cut(s) 513
BspPI GGATC 2 cut(s) 201, 214
BspTI CTTAAG 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 2 cut(s) 98, 260
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 387, 388
BssMI GATC 1 cut(s) 206
Bst2UI CCWGG 4 cut(s) 87, 249, 450, 481
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 271, 298, 511
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 2 cut(s) 340, 458
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 209
BstMAI GTCTC 2 cut(s) 84, 540
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 7 cut(s) 108, 270, 306, 360, 417, 426, 531
BstNI CCWGG 4 cut(s) 87, 249, 450, 481
BstSCI CCNGG 6 cut(s) 85, 247, 386, 387, 448, 479
BstSFI CTRYAG 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 253, 296
BstX2I RGATCY 1 cut(s) 206
BstXI CCANNNNNNTGG 2 cut(s) 93, 152
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 340, 458
BveI ACCTGC 3 cut(s) 93, 384, 425
Cac8I GCNNGC 3 cut(s) 271, 298, 511
CciI TCATGA 1 cut(s) 222
CfoI GCGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 230
Cfr9I CCCGGG 1 cut(s) 387
CsiI ACCWGGT 1 cut(s) 479
Csp6I GTAC 2 cut(s) 259, 477
CviAII CATG 3 cut(s) 108, 141, 223
CviQI GTAC 2 cut(s) 259, 477
DdeI CTNAG 1 cut(s) 235
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EciI GGCGGA 3 cut(s) 207, 435, 444
Eco24I GRGCYC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 387
EcoRII CCWGG 4 cut(s) 85, 247, 448, 479
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 3 cut(s) 111, 144, 226
FaiI YATR 5 cut(s) 25, 109, 142, 224, 553
FatI CATG 3 cut(s) 107, 140, 222
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 3 cut(s) 267, 310, 352
FokI GGATG 2 cut(s) 347, 465
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 267, 310, 352
FspBI CTAG 2 cut(s) 510, 556
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 267, 310, 352
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 1 cut(s) 247
HapII CCGG 3 cut(s) 168, 231, 388
HhaI GCGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 111, 144, 226
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HinfI GANTC 4 cut(s) 137, 338, 368, 548
HpaII CCGG 3 cut(s) 168, 231, 388
HphI GGTGA 2 cut(s) 7, 263
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 46, 238, 373
Hpy188III TCNNGA 3 cut(s) 127, 223, 462
Hpy8I GTNNAC 1 cut(s) 446
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 102, 296, 492, 534
HpyF10VI GCNNNNNNNGC 7 cut(s) 108, 270, 306, 360, 417, 426, 531
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 3 cut(s) 111, 144, 226
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 3 cut(s) 281, 389, 431
Lsp1109I GCAGC 2 cut(s) 253, 296
LweI GCATC 2 cut(s) 148, 521
MabI ACCWGGT 1 cut(s) 479
MaeI CTAG 2 cut(s) 510, 556
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 134, 251
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 2 cut(s) 65, 207
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 286, 501
MluCI AATT 1 cut(s) 289
MlyI GAGTC 3 cut(s) 131, 362, 542
MnlI CCTC 9 cut(s) 43, 123, 128, 191, 194, 197, 220, 416, 419
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 309
MspCI CTTAAG 1 cut(s) 71
MspI CCGG 3 cut(s) 168, 231, 388
MspR9I CCNGG 6 cut(s) 87, 249, 388, 389, 450, 481
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 4 cut(s) 87, 249, 450, 481
MwoI GCNNNNNNNGC 7 cut(s) 108, 270, 306, 360, 417, 426, 531
NciI CCSGG 2 cut(s) 388, 389
NdeII GATC 1 cut(s) 206
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 3 cut(s) 111, 144, 226
NlaIV GGNNCC 2 cut(s) 208, 283
NmuCI GTSAC 2 cut(s) 134, 251
PagI TCATGA 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 425
PctI GAATGC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 3 cut(s) 268, 311, 353
PleI GAGTC 3 cut(s) 131, 362, 542
PpsI GAGTC 3 cut(s) 131, 362, 542
Psp1406I AACGTT 1 cut(s) 148
Psp6I CCWGG 4 cut(s) 85, 247, 448, 479
PspGI CCWGG 4 cut(s) 85, 247, 448, 479
PspN4I GGNNCC 2 cut(s) 208, 283
PstI CTGCAG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 309
RsaI GTAC 2 cut(s) 260, 478
RsaNI GTAC 2 cut(s) 259, 477
SalI GTCGAC 1 cut(s) 444
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 3 cut(s) 267, 310, 352
Sau3AI GATC 1 cut(s) 206
SchI GAGTC 3 cut(s) 131, 362, 542
ScrFI CCNGG 6 cut(s) 87, 249, 388, 389, 450, 481
SduI GDGCHC 2 cut(s) 286, 501
SetI ASST 8 cut(s) 107, 120, 151, 311, 378, 439, 451, 485
SexAI ACCWGGT 1 cut(s) 479
SfaNI GCATC 2 cut(s) 148, 521
SfcI CTRYAG 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 289
SsiI CCGC 6 cut(s) 192, 351, 354, 411, 420, 429
SspMI CTAG 2 cut(s) 510, 556
StyD4I CCNGG 6 cut(s) 85, 247, 386, 387, 448, 479
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 445
TasI AATT 1 cut(s) 289
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 2 cut(s) 134, 251
TseI GCWGC 2 cut(s) 266, 309
Tsp45I GTSAC 2 cut(s) 134, 251
TspDTI ATGAA 2 cut(s) 52, 211
TspMI CCCGGG 1 cut(s) 387
Vha464I CTTAAG 1 cut(s) 71
XmaI CCCGGG 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 445
XspI CTAG 2 cut(s) 510, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.