Rmu_sc0006440.1_g000003

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006440.1
OG0011748
Physical Location & Seq
Reverse (-)
17227 .. 17610
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006440.1_g000003.1.cds

Sequence Viewer

Length: 384 bp
atgagcagaccaggagattggaactgcaggtcatgccagcacctcaacttccagaggcgcgactcgtgccagcgatgtggagatgtcaagtctggaggaggaggaggaggactggactttggggcttttaatggtggaaggcttggaggaggagggtcttcgttcgggtttggtagtgcaactactggctcggatgtgaggcctggtgactggtactgcgctgccggcaactgtggggcccacaattttgccagccgctctagctgcttcaagtgtggtgctttcaaggatgagtttgctgctactggcggtggtggaggctttgactctgaaatgactcgctcccgggggggtttcgggttgggaaaattagacgctgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

127

Amino Acids

12.95

Weight (kDa)

8.16

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 1 cut(s) 60
AciI CCGC 2 cut(s) 256, 309
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 2 cut(s) 271, 286
AjnI CCWGG 2 cut(s) 10, 202
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 2 cut(s) 200, 237
ApaI GGGCCC 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 221, 264, 299
AspLEI GCGC 2 cut(s) 60, 221
AspS9I GGNCC 2 cut(s) 237, 238
AsuC2I CCSGG 2 cut(s) 346, 347
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 241
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 208, 251, 286
BciT130I CCWGG 2 cut(s) 12, 204
BcnI CCSGG 2 cut(s) 346, 347
BfaI CTAG 2 cut(s) 261, 382
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 4 cut(s) 222, 256, 265, 300
BlsI GCNGC 4 cut(s) 223, 257, 266, 301
Bme1390I CCNGG 4 cut(s) 12, 204, 346, 347
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 2 cut(s) 237, 238
BmiI GGNNCC 2 cut(s) 238, 239
BmrFI CCNGG 4 cut(s) 12, 204, 346, 347
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 114
BpuMI CCSGG 2 cut(s) 346, 347
BsaJI CCNNGG 2 cut(s) 345, 346
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 4 cut(s) 117, 190, 215, 310
BseBI CCWGG 2 cut(s) 12, 204
BseDI CCNNGG 2 cut(s) 345, 346
BseGI GGATG 2 cut(s) 199, 295
BseNI ACTGG 4 cut(s) 117, 190, 215, 310
BseRI GAGGAG 6 cut(s) 111, 114, 117, 120, 162, 165
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 3 cut(s) 208, 251, 286
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 202, 239
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 2 cut(s) 225, 346
BsnI GGCC 2 cut(s) 202, 239
BsoBI CYCGRG 1 cut(s) 345
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 241
BspACI CCGC 2 cut(s) 256, 309
BspANI GGCC 2 cut(s) 202, 239
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 238, 239
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 4 cut(s) 117, 190, 215, 310
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 345, 346
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 12, 204
Bst4CI ACNGT 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 4 cut(s) 38, 71, 226, 253
BstF5I GGATG 2 cut(s) 199, 295
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 2 cut(s) 60, 221
BstMWI GCNNNNNNNGC 5 cut(s) 33, 66, 225, 261, 264
BstNI CCWGG 2 cut(s) 12, 204
BstSCI CCNGG 4 cut(s) 10, 202, 344, 345
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 208, 251, 286
BstV2I GAAGAC 1 cut(s) 150
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 2 cut(s) 202, 239
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 199, 295
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 4 cut(s) 38, 71, 226, 253
CfoI GCGC 2 cut(s) 60, 221
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 237, 238
Cfr9I CCCGGG 1 cut(s) 345
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 33
CviJI RGCY 8 cut(s) 125, 142, 189, 202, 239, 255, 264, 321
CviKI_1 RGCY 8 cut(s) 125, 142, 189, 202, 239, 255, 264, 321
CviQI GTAC 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 10, 202
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 1 cut(s) 36
FaiI YATR 1 cut(s) 34
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 4 cut(s) 222, 256, 265, 300
FokI GGATG 2 cut(s) 206, 302
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 4 cut(s) 222, 256, 265, 300
FspBI CTAG 2 cut(s) 261, 382
GlaI GCGC 2 cut(s) 59, 220
GluI GCNGC 4 cut(s) 222, 256, 265, 300
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 2 cut(s) 202, 239
HapII CCGG 2 cut(s) 225, 346
HhaI GCGC 2 cut(s) 60, 221
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 2 cut(s) 58, 219
HinP1I GCGC 2 cut(s) 58, 219
HinfI GANTC 3 cut(s) 62, 326, 337
HpaII CCGG 2 cut(s) 225, 346
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 193, 331
Hpy188III TCNNGA 2 cut(s) 52, 93
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 27, 179
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 66, 225, 261, 264
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 2 cut(s) 58, 219
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 3 cut(s) 208, 251, 286
MaeI CTAG 2 cut(s) 261, 382
MaeIII GTNAC 1 cut(s) 206
MbiI CCGCTC 1 cut(s) 258
MboII GAAGA 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 2 cut(s) 244, 368
MlyI GAGTC 3 cut(s) 56, 320, 331
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 1 cut(s) 129
MspI CCGG 2 cut(s) 225, 346
MspR9I CCNGG 4 cut(s) 12, 204, 346, 347
MvaI CCWGG 2 cut(s) 12, 204
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 5 cut(s) 33, 66, 225, 261, 264
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 2 cut(s) 346, 347
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 238, 239
NmuCI GTSAC 1 cut(s) 206
PceI AGGCCT 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 226
PkrI GCNGC 4 cut(s) 223, 257, 266, 301
PleI GAGTC 3 cut(s) 56, 320, 331
PpsI GAGTC 3 cut(s) 56, 320, 331
Psp6I CCWGG 2 cut(s) 10, 202
PspGI CCWGG 2 cut(s) 10, 202
PspN4I GGNNCC 2 cut(s) 238, 239
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 237, 238
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 4 cut(s) 222, 256, 265, 300
Sau96I GGNCC 2 cut(s) 237, 238
SchI GAGTC 3 cut(s) 56, 320, 331
ScrFI CCNGG 4 cut(s) 12, 204, 346, 347
SduI GDGCHC 1 cut(s) 241
SetI ASST 3 cut(s) 32, 45, 266
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 347
Sse9I AATT 2 cut(s) 244, 368
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 256, 309
SspMI CTAG 2 cut(s) 261, 382
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 4 cut(s) 10, 202, 344, 345
TaaI ACNGT 1 cut(s) 233
TasI AATT 2 cut(s) 244, 368
TauI GCSGC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 3 cut(s) 221, 264, 299
Tsp45I GTSAC 1 cut(s) 206
TspMI CCCGGG 1 cut(s) 345
XmaI CCCGGG 1 cut(s) 345
XspI CTAG 2 cut(s) 261, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.