Rmu_sc0006440.1_g000002

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006440.1
OG0011748
Physical Location & Seq
Reverse (-)
14093 .. 14527
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006440.1_g000002.1.cds

Sequence Viewer

Length: 435 bp
atgagcagaccaggagattggaactgcaggtcatgccagcacctcaacttccagaggcgcgactcgtgccagcgatgtggagatgtcaagtctggaggaggaggaggactggactttggggcttttaatggtggaaggcttggaggaggagggtcttcgttcgggttcggtagtgcaactactggctcggatgtgaggcctggtgactggtactgcgctgccggcaactgtggggcccacaattttgccagccgctctagctgcttcaagtgtggtgctttcaaggatgagtttgctgctactggcggtggtggaggctttgactctgaaatgactcgctcccgggggggtttcgggttgggaaatggcggtggtggcggcggcggtggtggtcggcctggatggaaatctggagattggatttgtaccaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

144

Amino Acids

14.52

Weight (kDa)

8.84

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 1 cut(s) 60
AciI CCGC 6 cut(s) 253, 306, 369, 378, 381, 384
AfaI GTAC 2 cut(s) 212, 427
AgsI TTSAA 2 cut(s) 268, 283
AjnI CCWGG 4 cut(s) 10, 199, 397, 428
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 197, 234, 395
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 218, 261, 296
AspLEI GCGC 2 cut(s) 60, 218
AspS9I GGNCC 2 cut(s) 234, 235
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 238
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 205, 248, 283
BccI CCATC 1 cut(s) 396
BciT130I CCWGG 4 cut(s) 12, 201, 399, 430
BcnI CCSGG 2 cut(s) 343, 344
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 6 cut(s) 219, 253, 262, 297, 379, 382
BlsI GCNGC 6 cut(s) 220, 254, 263, 298, 380, 383
Bme1390I CCNGG 6 cut(s) 12, 201, 343, 344, 399, 430
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 234, 235
BmiI GGNNCC 2 cut(s) 235, 236
BmrFI CCNGG 6 cut(s) 12, 201, 343, 344, 399, 430
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 114, 432
BpuMI CCSGG 2 cut(s) 343, 344
BsaBI GATNNNNATC 1 cut(s) 406
BsaJI CCNNGG 2 cut(s) 342, 343
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 4 cut(s) 114, 187, 212, 307
Bse8I GATNNNNATC 1 cut(s) 406
BseBI CCWGG 4 cut(s) 12, 201, 399, 430
BseDI CCNNGG 2 cut(s) 342, 343
BseGI GGATG 3 cut(s) 196, 292, 407
BseJI GATNNNNATC 1 cut(s) 406
BseNI ACTGG 4 cut(s) 114, 187, 212, 307
BseRI GAGGAG 5 cut(s) 111, 114, 117, 159, 162
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 3 cut(s) 205, 248, 283
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 199, 236, 397
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 222, 343
BsnI GGCC 3 cut(s) 199, 236, 397
BsoBI CYCGRG 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 238
BspACI CCGC 6 cut(s) 253, 306, 369, 378, 381, 384
BspANI GGCC 3 cut(s) 199, 236, 397
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 235, 236
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 4 cut(s) 114, 187, 212, 307
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 342, 343
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 4 cut(s) 12, 201, 399, 430
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 4 cut(s) 38, 71, 223, 250
BstF5I GGATG 3 cut(s) 196, 292, 407
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 2 cut(s) 60, 218
BstMWI GCNNNNNNNGC 6 cut(s) 33, 66, 222, 258, 261, 375
BstNI CCWGG 4 cut(s) 12, 201, 399, 430
BstSCI CCNGG 6 cut(s) 10, 199, 341, 342, 397, 428
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 205, 248, 283
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 3 cut(s) 199, 236, 397
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 3 cut(s) 196, 292, 407
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 4 cut(s) 38, 71, 223, 250
CfoI GCGC 2 cut(s) 60, 218
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 234, 235
Cfr9I CCCGGG 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 428
Csp6I GTAC 2 cut(s) 211, 426
CviAII CATG 1 cut(s) 33
CviJI RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 397
CviKI_1 RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 397
CviQI GTAC 2 cut(s) 211, 426
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 4 cut(s) 10, 199, 397, 428
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 36
FaiI YATR 1 cut(s) 34
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 219, 253, 262, 297, 379, 382
FokI GGATG 3 cut(s) 203, 299, 414
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 219, 253, 262, 297, 379, 382
FspBI CTAG 1 cut(s) 258
GlaI GCGC 2 cut(s) 59, 217
GluI GCNGC 6 cut(s) 219, 253, 262, 297, 379, 382
GsuI CTGGAG 2 cut(s) 114, 432
HaeIII GGCC 3 cut(s) 199, 236, 397
HapII CCGG 2 cut(s) 222, 343
HhaI GCGC 2 cut(s) 60, 218
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 2 cut(s) 58, 216
HinP1I GCGC 2 cut(s) 58, 216
HinfI GANTC 3 cut(s) 62, 323, 334
HpaII CCGG 2 cut(s) 222, 343
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 190, 328
Hpy188III TCNNGA 3 cut(s) 52, 93, 411
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 27, 176
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 66, 222, 258, 261, 375
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 2 cut(s) 58, 216
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 3 cut(s) 205, 248, 283
MabI ACCWGGT 1 cut(s) 428
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 1 cut(s) 241
MlyI GAGTC 3 cut(s) 56, 317, 328
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 1 cut(s) 126
MspI CCGG 2 cut(s) 222, 343
MspR9I CCNGG 6 cut(s) 12, 201, 343, 344, 399, 430
MvaI CCWGG 4 cut(s) 12, 201, 399, 430
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 6 cut(s) 33, 66, 222, 258, 261, 375
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 343, 344
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 235, 236
NmuCI GTSAC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 223
PkrI GCNGC 6 cut(s) 220, 254, 263, 298, 380, 383
PleI GAGTC 3 cut(s) 56, 317, 328
PpsI GAGTC 3 cut(s) 56, 317, 328
Psp6I CCWGG 4 cut(s) 10, 199, 397, 428
PspGI CCWGG 4 cut(s) 10, 199, 397, 428
PspN4I GGNNCC 2 cut(s) 235, 236
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 234, 235
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 2 cut(s) 212, 427
RsaNI GTAC 2 cut(s) 211, 426
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 6 cut(s) 219, 253, 262, 297, 379, 382
Sau96I GGNCC 2 cut(s) 234, 235
SchI GAGTC 3 cut(s) 56, 317, 328
ScrFI CCNGG 6 cut(s) 12, 201, 343, 344, 399, 430
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 32, 45, 263, 434
SexAI ACCWGGT 1 cut(s) 428
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 1 cut(s) 241
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 6 cut(s) 253, 306, 369, 378, 381, 384
SspMI CTAG 1 cut(s) 258
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 6 cut(s) 10, 199, 341, 342, 397, 428
TaaI ACNGT 1 cut(s) 230
TasI AATT 1 cut(s) 241
TauI GCSGC 3 cut(s) 255, 381, 384
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 3 cut(s) 218, 261, 296
Tsp45I GTSAC 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 342
XmaI CCCGGG 1 cut(s) 342
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.