Rorug02G0332000

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011748
Physical Location & Seq
Forward (+)
41169898 .. 41174008
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0332000.1

Sequence Viewer

Length: 1161 bp
ATGAAGAGGGAGGCAGGAGAGAGGCAAAGCAATGGGTCGTCGTCGTCTTCATCCTCGGTACCTCTTATCAATTCTCAGTCCTCCTCCTATCCAACTGAGCAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAGTAACCTGGGAACAAATTGAGAATTCCGAGACCTACCTTGTCTGCTCCATGTACGAGGAGGCAGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACATAGCGAGGCTGATGATGATGAGCTGTATGACATGTTGGAATCGGCTGGTATGGTGCTTGTGCAATCTCTAAAACAACTTGGAAGGACACCGGAGATTCTGAATGAGCTCAAATTATCATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGTATGCTTTTATATTTCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCGTTTTGTTTTGGGTATTGATAAGTATCTTGAAGTAGTTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATGATGTTGACCTTGCTACCTCTTGGGTCGAGAATGCTAAAATACCTGAGGACAGAAGACAGGTACTTCTGAGAAGATTACACTCACTACATTCAATTAAAGCCACCAACGCATCACAAGGATCCTTCTCATCTTTGCTGGTGGATAACTACGAAGATCCTTCACCTGAGGGACGCCCAAAAGTGAAATATCCTCTAAACGGAGATACTGCTAAGAAACAAGCAGTTTTAAAGTTGTCGAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACTCTGAAGTTTGGGAATACTCGGTTGGTAATATCTAATGGAAAGATTGCCCTGGGCTGCTTGATTCTGCTCATATCTTATGTTTTGCAGAGAAAACGAGCTACCTTAAAGAGGATTGTTCAGAGACAAGCCTTGTCAATGAAAAATGCTTTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAACCCTCTAGCTGCTGTTCAACCTCTGGGTGCTGCAGCAAGGGCAGGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

386

Amino Acids

42.78

Weight (kDa)

6.56

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AccI GTMKAC 2 cut(s) 611, 1074
AccIII TCCGGA 1 cut(s) 134
AciI CCGC 1 cut(s) 483
AclWI GGATC 3 cut(s) 756, 769, 791
AcsI RAATTY 2 cut(s) 172, 461
AcuI CTGAAG 1 cut(s) 944
AcyI GRCGYC 1 cut(s) 814
AfaI GTAC 4 cut(s) 60, 203, 705, 913
AfiI CCNNNNNNNGG 2 cut(s) 839, 1029
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 8 cut(s) 107, 401, 458, 596, 619, 640, 735, 1127
AjnI CCWGG 3 cut(s) 155, 969, 1101
AjuI GAANNNNNNNTTGG 2 cut(s) 926, 958
AluBI AGCT 7 cut(s) 103, 224, 277, 361, 1019, 1087, 1118
AluI AGCT 7 cut(s) 103, 224, 277, 361, 1019, 1087, 1118
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 173, 1036
AlwI GGATC 3 cut(s) 756, 769, 791
Aor13HI TCCGGA 1 cut(s) 134
AoxI GGCC 2 cut(s) 139, 1153
ApeKI GCWGC 7 cut(s) 100, 212, 975, 1084, 1118, 1139, 1142
ApoI RAATTY 2 cut(s) 172, 461
Asp718I GGTACC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 795, 1117
AxyI CCTNAGG 2 cut(s) 687, 807
BamHI GGATCC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 39, 703
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 7 cut(s) 112, 224, 962, 1096, 1105, 1126, 1154
BccI CCATC 3 cut(s) 121, 494, 554
BciT130I CCWGG 3 cut(s) 157, 971, 1103
BcoDI GTCTC 2 cut(s) 173, 1036
BfaI CTAG 1 cut(s) 1115
BfmI CTRYAG 1 cut(s) 1140
BisI GCNGC 7 cut(s) 101, 213, 976, 1085, 1119, 1140, 1143
BlsI GCNGC 7 cut(s) 102, 214, 977, 1086, 1120, 1141, 1144
Bme1390I CCNGG 3 cut(s) 157, 971, 1103
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 6 cut(s) 60, 133, 142, 631, 763, 908
BmrFI CCNGG 3 cut(s) 157, 971, 1103
BmrI ACTGGG 2 cut(s) 143, 423
BmsI GCATC 1 cut(s) 761
BmuI ACTGGG 2 cut(s) 143, 423
BpiI GAAGAC 2 cut(s) 39, 703
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu10I CCTNAGC 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 814
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 54, 156, 969, 970
BsaWI WCCGGW 3 cut(s) 110, 134, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 839, 1029
Bse1I ACTGG 3 cut(s) 149, 418, 1156
Bse21I CCTNAGG 2 cut(s) 687, 807
Bse3DI GCAATG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 134
BseBI CCWGG 3 cut(s) 157, 971, 1103
BseDI CCNNGG 4 cut(s) 54, 156, 969, 970
BseGI GGATG 2 cut(s) 50, 505
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 839, 1029
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 5 cut(s) 87, 89, 678, 701, 798
BseNI ACTGG 3 cut(s) 149, 418, 1156
BseRI GAGGAG 2 cut(s) 73, 221
BseXI GCAGC 7 cut(s) 112, 224, 962, 1096, 1105, 1126, 1154
BseYI CCCAGC 1 cut(s) 625
BshFI GGCC 2 cut(s) 141, 1155
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 111, 135, 344
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 2 cut(s) 839, 1029
BsmAI GTCTC 2 cut(s) 173, 1036
BsmFI GGGAC 1 cut(s) 825
BsmI GAATGC 2 cut(s) 442, 679
BsnI GGCC 2 cut(s) 141, 1155
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 363
Bsp13I TCCGGA 1 cut(s) 134
Bsp143I GATC 2 cut(s) 761, 796
BspACI CCGC 1 cut(s) 483
BspANI GGCC 2 cut(s) 141, 1155
BspCNI CTCAG 5 cut(s) 88, 88, 679, 702, 799
BspEI TCCGGA 1 cut(s) 134
BspLI GGNNCC 6 cut(s) 60, 133, 142, 631, 763, 908
BspMAI CTGCAG 1 cut(s) 1144
BspPI GGATC 3 cut(s) 756, 769, 791
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 3 cut(s) 149, 418, 1156
BssECI CCNNGG 4 cut(s) 54, 156, 969, 970
BssMI GATC 2 cut(s) 761, 796
BssNAI GTATAC 1 cut(s) 612
BssNI GRCGYC 1 cut(s) 814
Bst1107I GTATAC 1 cut(s) 612
Bst2UI CCWGG 3 cut(s) 157, 971, 1103
BstACI GRCGYC 1 cut(s) 814
BstC8I GCNNGC 2 cut(s) 1089, 1153
BstDEI CTNAG 7 cut(s) 75, 96, 479, 687, 710, 807, 852
BstENI CCTNNNNNAGG 1 cut(s) 1027
BstF5I GGATG 2 cut(s) 50, 505
BstKTI GATC 2 cut(s) 764, 799
BstMAI GTCTC 2 cut(s) 173, 1036
BstMBI GATC 2 cut(s) 761, 796
BstMWI GCNNNNNNNGC 3 cut(s) 221, 749, 1148
BstNI CCWGG 3 cut(s) 157, 971, 1103
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 3 cut(s) 155, 969, 1101
BstSFI CTRYAG 1 cut(s) 1140
BstV1I GCAGC 7 cut(s) 112, 224, 962, 1096, 1105, 1126, 1154
BstV2I GAAGAC 2 cut(s) 39, 703
BstX2I RGATCY 2 cut(s) 761, 796
BstXI CCANNNNNNTGG 2 cut(s) 156, 900
BstYI RGATCY 2 cut(s) 761, 796
BstZ17I GTATAC 1 cut(s) 612
Bsu36I CCTNAGG 2 cut(s) 687, 807
BsuRI GGCC 2 cut(s) 141, 1155
BtsCI GGATG 2 cut(s) 50, 505
Cac8I GCNNGC 2 cut(s) 1089, 1153
Cfr13I GGNCC 1 cut(s) 140
CseI GACGC 1 cut(s) 822
CsiI ACCWGGT 1 cut(s) 1101
Csp6I GTAC 4 cut(s) 59, 202, 704, 912
CviAII CATG 4 cut(s) 199, 286, 557, 894
CviQI GTAC 4 cut(s) 59, 202, 704, 912
DdeI CTNAG 7 cut(s) 75, 96, 479, 687, 710, 807, 852
DpnI GATC 2 cut(s) 763, 798
DpnII GATC 2 cut(s) 761, 796
DraI TTTAAA 1 cut(s) 870
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 944
Eco81I CCTNAGG 2 cut(s) 687, 807
EcoICRI GAGCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 1027
EcoO109I RGGNCCY 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 3 cut(s) 155, 969, 1101
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 4 cut(s) 202, 289, 560, 897
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 462, 494
FaqI GGGAC 1 cut(s) 825
FatI CATG 4 cut(s) 198, 285, 556, 893
FblI GTMKAC 2 cut(s) 611, 1074
Fnu4HI GCNGC 7 cut(s) 101, 213, 976, 1085, 1119, 1140, 1143
FokI GGATG 2 cut(s) 37, 512
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 7 cut(s) 101, 213, 976, 1085, 1119, 1140, 1143
FspBI CTAG 1 cut(s) 1115
GluI GCNGC 7 cut(s) 101, 213, 976, 1085, 1119, 1140, 1143
GsaI CCCAGC 1 cut(s) 629
HaeIII GGCC 2 cut(s) 141, 1155
HapII CCGG 3 cut(s) 111, 135, 344
HgaI GACGC 1 cut(s) 822
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 4 cut(s) 202, 289, 560, 897
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 3 cut(s) 293, 349, 982
HpaII CCGG 3 cut(s) 111, 135, 344
HphI GGTGA 2 cut(s) 795, 1117
Hpy166II GTNNAC 5 cut(s) 116, 612, 649, 1075, 1108
Hpy188I TCNGA 7 cut(s) 178, 237, 354, 436, 711, 924, 1041
Hpy188III TCNNGA 6 cut(s) 124, 135, 458, 467, 593, 670
Hpy8I GTNNAC 5 cut(s) 116, 612, 649, 1075, 1108
Hpy99I CGWCG 2 cut(s) 43, 46
HpyAV CCTTC 4 cut(s) 330, 431, 775, 810
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 316, 539, 1006, 1091, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 749, 1148
HpyF3I CTNAG 7 cut(s) 75, 96, 479, 687, 710, 807, 852
HpySE526I ACGT 1 cut(s) 241
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 4 cut(s) 202, 289, 560, 897
Kpn2I TCCGGA 1 cut(s) 134
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 761, 796
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 7 cut(s) 112, 224, 962, 1096, 1105, 1126, 1154
LweI GCATC 1 cut(s) 761
MabI ACCWGGT 1 cut(s) 1101
MaeI CTAG 1 cut(s) 1115
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 763, 798
MboI GATC 2 cut(s) 761, 796
MboII GAAGA 6 cut(s) 16, 39, 398, 708, 726, 806
MflI RGATCY 2 cut(s) 761, 796
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 6 cut(s) 70, 165, 172, 365, 461, 735
MmeI TCCRAC 3 cut(s) 116, 270, 467
MroI TCCGGA 1 cut(s) 134
MseI TTAA 3 cut(s) 738, 869, 1025
MspI CCGG 3 cut(s) 111, 135, 344
MspR9I CCNGG 3 cut(s) 157, 971, 1103
Mva1269I GAATGC 2 cut(s) 442, 679
MvaI CCWGG 3 cut(s) 157, 971, 1103
MwoI GCNNNNNNNGC 3 cut(s) 221, 749, 1148
NdeII GATC 2 cut(s) 761, 796
NlaIII CATG 4 cut(s) 202, 289, 560, 897
NlaIV GGNNCC 6 cut(s) 60, 133, 142, 631, 763, 908
NspI RCATGY 1 cut(s) 289
PasI CCCWGGG 1 cut(s) 970
PciI ACATGT 1 cut(s) 285
PctI GAATGC 2 cut(s) 442, 679
PfeI GAWTC 3 cut(s) 293, 349, 982
PkrI GCNGC 7 cut(s) 102, 214, 977, 1086, 1120, 1141, 1144
PscI ACATGT 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 155, 969, 1101
PspFI CCCAGC 1 cut(s) 625
PspGI CCWGG 3 cut(s) 155, 969, 1101
PspN4I GGNNCC 6 cut(s) 60, 133, 142, 631, 763, 908
PspPI GGNCC 1 cut(s) 140
PstI CTGCAG 1 cut(s) 1144
PsuI RGATCY 2 cut(s) 761, 796
RsaI GTAC 4 cut(s) 60, 203, 705, 913
RsaNI GTAC 4 cut(s) 59, 202, 704, 912
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 738, 869, 1025
SatI GCNGC 7 cut(s) 101, 213, 976, 1085, 1119, 1140, 1143
Sau3AI GATC 2 cut(s) 761, 796
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 3 cut(s) 157, 971, 1103
SduI GDGCHC 1 cut(s) 363
SexAI ACCWGGT 1 cut(s) 1101
SfaNI GCATC 1 cut(s) 761
SfcI CTRYAG 1 cut(s) 1140
Sse9I AATT 6 cut(s) 70, 165, 172, 365, 461, 735
SsiI CCGC 1 cut(s) 483
SspMI CTAG 1 cut(s) 1115
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 155, 969, 1101
TaiI ACGT 1 cut(s) 244
TaqI TCGA 3 cut(s) 123, 669, 878
TasI AATT 6 cut(s) 70, 165, 172, 365, 461, 735
TfiI GAWTC 3 cut(s) 293, 349, 982
Tru1I TTAA 3 cut(s) 738, 869, 1025
Tru9I TTAA 3 cut(s) 738, 869, 1025
TseI GCWGC 7 cut(s) 100, 212, 975, 1084, 1118, 1139, 1142
TspDTI ATGAA 4 cut(s) 17, 39, 1073, 1086
TspGWI ACGGA 2 cut(s) 855, 899
XagI CCTNNNNNAGG 1 cut(s) 1027
XapI RAATTY 2 cut(s) 172, 461
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 900
XmiI GTMKAC 2 cut(s) 611, 1074
XspI CTAG 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.