Rh2AG382800

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011748
Physical Location & Seq
Reverse (-)
57280972 .. 57282800
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG382800.1

Sequence Viewer

Length: 438 bp
ATGAGCAGACCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGCGACTCGTGCCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGACTGGACTTTGGGGCTTTTAATGGTGGAAGGCTTGGAGGAGGAGGGTCTTCGTTCGGGTTCGGTAGTGCAACTACTGGCTCGGATGTGAGGCCTGGTGACTGGTACTGCGCTGCCGGCAACTGTGGGGCCCACAATTTTGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTTGCTGCTACTGGCGGTGGTGGCGGCTTTGACTCTGAAATGACTCGCTCCCGGGGGGGTTTCGGGTTGGGAAATGGCGGTGGTGGCGGTGGTACTGGTGGTGGTCGGCCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

145

Amino Acids

14.62

Weight (kDa)

8.84

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 255
AccII CGCG 1 cut(s) 60
AciI CCGC 5 cut(s) 253, 306, 315, 369, 378
AfaI GTAC 3 cut(s) 212, 385, 430
AgsI TTSAA 2 cut(s) 268, 283
AjnI CCWGG 4 cut(s) 10, 199, 400, 431
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 197, 234, 398
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 218, 261, 296
AspLEI GCGC 2 cut(s) 60, 218
AspS9I GGNCC 2 cut(s) 234, 235
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 238
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 3 cut(s) 205, 248, 283
BccI CCATC 1 cut(s) 399
BciT130I CCWGG 4 cut(s) 12, 201, 402, 433
BcnI CCSGG 2 cut(s) 343, 344
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 5 cut(s) 219, 253, 262, 297, 316
BlsI GCNGC 5 cut(s) 220, 254, 263, 298, 317
Bme1390I CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 234, 235
BmiI GGNNCC 2 cut(s) 235, 236
BmrFI CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 2 cut(s) 114, 435
BpuMI CCSGG 2 cut(s) 343, 344
BsaBI GATNNNNATC 1 cut(s) 409
BsaJI CCNNGG 2 cut(s) 342, 343
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 5 cut(s) 114, 187, 212, 307, 391
Bse8I GATNNNNATC 1 cut(s) 409
BseBI CCWGG 4 cut(s) 12, 201, 402, 433
BseDI CCNNGG 2 cut(s) 342, 343
BseGI GGATG 3 cut(s) 196, 292, 410
BseJI GATNNNNATC 1 cut(s) 409
BseNI ACTGG 5 cut(s) 114, 187, 212, 307, 391
BseRI GAGGAG 5 cut(s) 111, 114, 117, 159, 162
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 3 cut(s) 205, 248, 283
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 199, 236, 400
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 222, 343
BsnI GGCC 3 cut(s) 199, 236, 400
BsoBI CYCGRG 1 cut(s) 342
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 238
BspACI CCGC 5 cut(s) 253, 306, 315, 369, 378
BspANI GGCC 3 cut(s) 199, 236, 400
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 235, 236
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 5 cut(s) 114, 187, 212, 307, 391
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 342, 343
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 4 cut(s) 12, 201, 402, 433
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 4 cut(s) 38, 71, 223, 250
BstF5I GGATG 3 cut(s) 196, 292, 410
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 2 cut(s) 60, 218
BstMWI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 375
BstNI CCWGG 4 cut(s) 12, 201, 402, 433
BstSCI CCNGG 6 cut(s) 10, 199, 341, 342, 400, 431
BstSFI CTRYAG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 205, 248, 283
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 3 cut(s) 199, 236, 400
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 3 cut(s) 196, 292, 410
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 4 cut(s) 38, 71, 223, 250
CfoI GCGC 2 cut(s) 60, 218
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 234, 235
Cfr9I CCCGGG 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 431
Csp6I GTAC 3 cut(s) 211, 384, 429
CviAII CATG 1 cut(s) 33
CviJI RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 400
CviKI_1 RGCY 9 cut(s) 122, 139, 186, 199, 236, 252, 261, 318, 400
CviQI GTAC 3 cut(s) 211, 384, 429
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 234
EcoRII CCWGG 4 cut(s) 10, 199, 400, 431
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 36
FaiI YATR 1 cut(s) 34
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 219, 253, 262, 297, 316
FokI GGATG 3 cut(s) 203, 299, 417
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 219, 253, 262, 297, 316
FspBI CTAG 1 cut(s) 258
GlaI GCGC 2 cut(s) 59, 217
GluI GCNGC 5 cut(s) 219, 253, 262, 297, 316
GsuI CTGGAG 2 cut(s) 114, 435
HaeIII GGCC 3 cut(s) 199, 236, 400
HapII CCGG 2 cut(s) 222, 343
HhaI GCGC 2 cut(s) 60, 218
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 2 cut(s) 58, 216
HinP1I GCGC 2 cut(s) 58, 216
HinfI GANTC 3 cut(s) 62, 323, 334
HpaII CCGG 2 cut(s) 222, 343
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 190, 328
Hpy188III TCNNGA 3 cut(s) 52, 93, 414
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 27, 176
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 375
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 2 cut(s) 58, 216
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 3 cut(s) 205, 248, 283
MabI ACCWGGT 1 cut(s) 431
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 203
MbiI CCGCTC 1 cut(s) 255
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 1 cut(s) 241
MlyI GAGTC 3 cut(s) 56, 317, 328
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 1 cut(s) 126
MspI CCGG 2 cut(s) 222, 343
MspR9I CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
MvaI CCWGG 4 cut(s) 12, 201, 402, 433
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 7 cut(s) 33, 66, 222, 258, 261, 312, 375
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 343, 344
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 2 cut(s) 235, 236
NmuCI GTSAC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 223
PkrI GCNGC 5 cut(s) 220, 254, 263, 298, 317
PleI GAGTC 3 cut(s) 56, 317, 328
PpsI GAGTC 3 cut(s) 56, 317, 328
Psp6I CCWGG 4 cut(s) 10, 199, 400, 431
PspGI CCWGG 4 cut(s) 10, 199, 400, 431
PspN4I GGNNCC 2 cut(s) 235, 236
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 234, 235
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 3 cut(s) 212, 385, 430
RsaNI GTAC 3 cut(s) 211, 384, 429
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 5 cut(s) 219, 253, 262, 297, 316
Sau96I GGNCC 2 cut(s) 234, 235
SchI GAGTC 3 cut(s) 56, 317, 328
ScrFI CCNGG 6 cut(s) 12, 201, 343, 344, 402, 433
SduI GDGCHC 1 cut(s) 238
SetI ASST 4 cut(s) 32, 45, 263, 437
SexAI ACCWGGT 1 cut(s) 431
SfcI CTRYAG 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 1 cut(s) 241
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 5 cut(s) 253, 306, 315, 369, 378
SspMI CTAG 1 cut(s) 258
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 6 cut(s) 10, 199, 341, 342, 400, 431
TaaI ACNGT 1 cut(s) 230
TasI AATT 1 cut(s) 241
TauI GCSGC 2 cut(s) 255, 318
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 3 cut(s) 218, 261, 296
Tsp45I GTSAC 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 342
XmaI CCCGGG 1 cut(s) 342
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.