FvH4_6g30320

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011748
Physical Location & Seq
Reverse (-)
23389270 .. 23390958
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30320.t4

Sequence Viewer

Length: 510 bp
ATGAGCAGGCCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGCGACTCGTGCCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGAGGAGGACTTGACTTTGGGGCTTTCAATGGCGGAAGGCTCGGAGGAGGAGGGTCTTCATTTGGGTTCGGTAGCGCAACCACTGGCTCCGATGTGAGGCCTGGTGACTGGTACTGCGCTGCCGGCAACTGTGGCGCCCACAACTTCGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTTCTTGCTACTGGAGGCGGCGGCTTTGACTCTGAAATGCCTCGCTCCAGGGGAGGTTTCGGGTTGGGAAATGGCGGCGCCGGCGCTGGTGGTGGTGGGCGGCCTGGATGGAAATCTGGAGATTGGATTTGTACTAGGTTCGGATGCAACGAGCATAACTTTGCTAGCAGAATGGAATGTTTCAGATGCAATGCCCCAAGAGACACATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

170

Amino Acids

17.49

Weight (kDa)

8.66

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 137 - 166 6.7e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccB1I GGYRCC 2 cut(s) 239, 374
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 1 cut(s) 60
AciI CCGC 6 cut(s) 138, 259, 315, 318, 372, 397
AcyI GRCGYC 2 cut(s) 240, 375
AfaI GTAC 2 cut(s) 218, 430
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 3 cut(s) 133, 274, 289
AjnI CCWGG 4 cut(s) 10, 205, 344, 400
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 492
AoxI GGCC 3 cut(s) 8, 203, 398
ApeKI GCWGC 2 cut(s) 224, 267
AspLEI GCGC 6 cut(s) 60, 182, 224, 242, 377, 383
AsuHPI GGTGA 1 cut(s) 221
AsuNHI GCTAGC 1 cut(s) 461
BanI GGYRCC 2 cut(s) 239, 374
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 211, 254
BccI CCATC 1 cut(s) 399
BciT130I CCWGG 4 cut(s) 12, 207, 346, 402
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 4 cut(s) 264, 432, 462, 508
BfmI CTRYAG 1 cut(s) 25
BfoI RGCGCY 3 cut(s) 243, 378, 384
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 7 cut(s) 225, 259, 268, 316, 319, 373, 398
BlsI GCNGC 7 cut(s) 226, 260, 269, 317, 320, 374, 399
Bme1390I CCNGG 4 cut(s) 12, 207, 346, 402
BmiI GGNNCC 3 cut(s) 193, 241, 376
BmrFI CCNGG 4 cut(s) 12, 207, 346, 402
BmsI GCATC 2 cut(s) 431, 473
BmtI GCTAGC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 4 cut(s) 114, 328, 330, 435
BsaBI GATNNNNATC 1 cut(s) 409
BsaHI GRCGYC 2 cut(s) 240, 375
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 2 cut(s) 227, 377
Bse1I ACTGG 3 cut(s) 193, 218, 313
Bse3DI GCAATG 1 cut(s) 493
Bse8I GATNNNNATC 1 cut(s) 409
BseBI CCWGG 4 cut(s) 12, 207, 346, 402
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 3 cut(s) 298, 410, 446
BseJI GATNNNNATC 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 493
BseNI ACTGG 3 cut(s) 193, 218, 313
BseRI GAGGAG 7 cut(s) 111, 114, 117, 120, 123, 165, 168
BseXI GCAGC 2 cut(s) 211, 254
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 10, 205, 400
BshNI GGYRCC 2 cut(s) 239, 374
BsiSI CCGG 2 cut(s) 228, 378
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 492
BsnI GGCC 3 cut(s) 10, 205, 400
BspACI CCGC 6 cut(s) 138, 259, 315, 318, 372, 397
BspANI GGCC 3 cut(s) 10, 205, 400
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 193, 241, 376
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 465
BspT107I GGYRCC 2 cut(s) 239, 374
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 2 cut(s) 227, 377
BsrI ACTGG 3 cut(s) 193, 218, 313
BssAI RCCGGY 2 cut(s) 227, 377
BssECI CCNNGG 1 cut(s) 345
BssNI GRCGYC 2 cut(s) 240, 375
BssSI CACGAG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 4 cut(s) 12, 207, 346, 402
Bst4CI ACNGT 1 cut(s) 236
BstACI GRCGYC 2 cut(s) 240, 375
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 7 cut(s) 8, 38, 71, 229, 256, 379, 463
BstF5I GGATG 3 cut(s) 298, 410, 446
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 3 cut(s) 243, 378, 384
BstHHI GCGC 6 cut(s) 60, 182, 224, 242, 377, 383
BstMAI GTCTC 1 cut(s) 492
BstMWI GCNNNNNNNGC 7 cut(s) 33, 66, 228, 237, 264, 267, 378
BstNI CCWGG 4 cut(s) 12, 207, 346, 402
BstSCI CCNGG 4 cut(s) 10, 205, 344, 400
BstSFI CTRYAG 1 cut(s) 25
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 211, 254
BstV2I GAAGAC 1 cut(s) 153
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 3 cut(s) 10, 205, 400
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 3 cut(s) 298, 410, 446
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 7 cut(s) 8, 38, 71, 229, 256, 379, 463
CfoI GCGC 6 cut(s) 60, 182, 224, 242, 377, 383
Cfr10I RCCGGY 2 cut(s) 227, 377
Csp6I GTAC 2 cut(s) 217, 429
CviAII CATG 1 cut(s) 33
CviJI RGCY 9 cut(s) 10, 128, 145, 192, 205, 258, 267, 321, 400
CviKI_1 RGCY 9 cut(s) 10, 128, 145, 192, 205, 258, 267, 321, 400
CviQI GTAC 2 cut(s) 217, 429
DinI GGCGCC 2 cut(s) 241, 376
EciI GGCGGA 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 205
EcoRII CCWGG 4 cut(s) 10, 205, 344, 400
EgeI GGCGCC 2 cut(s) 241, 376
EheI GGCGCC 2 cut(s) 241, 376
FaeI CATG 1 cut(s) 36
FaiI YATR 3 cut(s) 34, 453, 505
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 7 cut(s) 225, 259, 268, 316, 319, 373, 398
FokI GGATG 3 cut(s) 305, 417, 453
Fsp4HI GCNGC 7 cut(s) 225, 259, 268, 316, 319, 373, 398
FspBI CTAG 4 cut(s) 264, 432, 462, 508
GlaI GCGC 6 cut(s) 59, 181, 223, 241, 376, 382
GluI GCNGC 7 cut(s) 225, 259, 268, 316, 319, 373, 398
GsuI CTGGAG 4 cut(s) 114, 328, 330, 435
HaeII RGCGCY 3 cut(s) 243, 378, 384
HaeIII GGCC 3 cut(s) 10, 205, 400
HapII CCGG 2 cut(s) 228, 378
HhaI GCGC 6 cut(s) 60, 182, 224, 242, 377, 383
Hin1I GRCGYC 2 cut(s) 240, 375
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 6 cut(s) 58, 180, 222, 240, 375, 381
HinP1I GCGC 6 cut(s) 58, 180, 222, 240, 375, 381
HinfI GANTC 2 cut(s) 62, 326
HpaII CCGG 2 cut(s) 228, 378
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 5 cut(s) 149, 196, 331, 440, 482
Hpy188III TCNNGA 3 cut(s) 52, 93, 414
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 27, 444, 486
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 66, 228, 237, 264, 267, 378
Hsp92I GRCGYC 2 cut(s) 240, 375
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 6 cut(s) 58, 180, 222, 240, 375, 381
KasI GGCGCC 2 cut(s) 239, 374
KroI GCCGGC 2 cut(s) 227, 377
KroNI GCCGGC 2 cut(s) 229, 379
LmnI GCTCC 2 cut(s) 197, 347
Lsp1109I GCAGC 2 cut(s) 211, 254
LweI GCATC 2 cut(s) 431, 473
MaeI CTAG 4 cut(s) 264, 432, 462, 508
MaeIII GTNAC 1 cut(s) 209
MbiI CCGCTC 1 cut(s) 261
MboII GAAGA 1 cut(s) 153
Mly113I GGCGCC 2 cut(s) 240, 375
MlyI GAGTC 2 cut(s) 56, 320
MreI CGCCGGCG 1 cut(s) 377
MroNI GCCGGC 2 cut(s) 227, 377
MspI CCGG 2 cut(s) 228, 378
MspR9I CCNGG 4 cut(s) 12, 207, 346, 402
MvaI CCWGG 4 cut(s) 12, 207, 346, 402
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 7 cut(s) 33, 66, 228, 237, 264, 267, 378
NaeI GCCGGC 2 cut(s) 229, 379
NarI GGCGCC 2 cut(s) 240, 375
NgoMIV GCCGGC 2 cut(s) 227, 377
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 3 cut(s) 193, 241, 376
NmuCI GTSAC 1 cut(s) 209
PceI AGGCCT 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PdiI GCCGGC 2 cut(s) 229, 379
PkrI GCNGC 7 cut(s) 226, 260, 269, 317, 320, 374, 399
PleI GAGTC 2 cut(s) 56, 320
PluTI GGCGCC 2 cut(s) 243, 378
PpsI GAGTC 2 cut(s) 56, 320
Psp6I CCWGG 4 cut(s) 10, 205, 344, 400
PspGI CCWGG 4 cut(s) 10, 205, 344, 400
PspN4I GGNNCC 3 cut(s) 193, 241, 376
PstI CTGCAG 1 cut(s) 29
RsaI GTAC 2 cut(s) 218, 430
RsaNI GTAC 2 cut(s) 217, 429
SatI GCNGC 7 cut(s) 225, 259, 268, 316, 319, 373, 398
SchI GAGTC 2 cut(s) 56, 320
ScrFI CCNGG 4 cut(s) 12, 207, 346, 402
SetI ASST 5 cut(s) 32, 45, 269, 355, 437
SfaNI GCATC 2 cut(s) 431, 473
SfcI CTRYAG 1 cut(s) 25
SfoI GGCGCC 2 cut(s) 241, 376
SgrAI CRCCGGYG 1 cut(s) 377
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 6 cut(s) 138, 259, 315, 318, 372, 397
SspDI GGCGCC 2 cut(s) 239, 374
SspMI CTAG 4 cut(s) 264, 432, 462, 508
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 4 cut(s) 10, 205, 344, 400
TaaI ACNGT 1 cut(s) 236
TatI WGTACW 1 cut(s) 428
TauI GCSGC 5 cut(s) 261, 318, 321, 375, 400
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 2 cut(s) 224, 267
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 193
XspI CTAG 4 cut(s) 264, 432, 462, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.