AT3G15800

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
5344989 .. 5347147
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15800.1

Sequence Viewer

Length: 1200 bp
ATGGGTTATTGTGTTCCTCTTCGAAAGTCTCCAACTTCACATATGGTTTTCTCTTCTTTCTTCCTTTCGTTTCTCTTAGTCTTCTCTATACTCTCTTCACAAACGGCCGTAGCATTCATCGGAACATATGGTGTAAACTACGGTCGCATAGCGGATAATCTTCCGTCTCCTGACGCGGTAGCAACTCTCCTTAAATCAGCAAAGATTAGAAACACCCGTATCTACGATGCTGACCACTCTGTACTCACGGCGTTCCGCGGGACCGGGATTGAAATCATCGTTGGCTTAGGCAACGAGTTTCTCAAAGACATTAGTGTAGGAGAAGACCGAGCCATGAACTGGATTAAAGAAAACGTCGAGCCTTTCATACGAGGCGGTACTAAAATTAGCGGTATCGCGGTGGGTAACGAGATTTTAGGTGGCACCGATATCGGGCTTTGGGAAGCTCTCTTACCCGCAGCCAAGAACGTTTACTCCGCTCTTCGCCGTCTCGGTCTTCACAATGTCGTCGAGGTGTCGAGTCCACATTCAGAGGCAGTGTTTGCGAACTCGTATCCACCGTCTTCGTGTACGTTCAGGGACGATGTGGCGCCGTTTATGAAGCCGTTGTTAGCGTTTTTTTGGCAAATTCAGTCGCCGTTCTACATTAACGCCTACCCTTTTCTTGCATATAAATCCGACCCGATTACAATTGACATCAATTACGCCCTTTTCGAGCACAACAAAGGCATCTTGGACCCTAAAACCAAGCTTCATTACGATAACATGTTCGACGCCATGGTCGATGCTTCTTATGCTGCTCTCGAAAAAGCTGGCTACACAAAAGTCCCGGTGATTGTTTCGGAGACGGGATGGGCATCAAAAGGCGATGCAGACGAGCCTGGAGCGTCGGTAAAGAACGCGAGAACATATAATCGGAATCTTAGGAAGCGGCTGCAGAAGAGGAAAGGAACACCGTACAGACCAGACATGGTGGTGAGAGCTTACGTGTTTGCTCTTTTCAACGAGAACTCGAAACCAGGTCCCACTTCCGAGAGAAACTTTGGCCTTTTTAAACCCGATGGTACTATTGCCTACGATATTGGCTTAACCGGACTCAAGTCCTCTTCTGCCACACGGTATCGTTTTAAGTCGTCTCTTGTTTCCGCTTCTGCTTTCACGTGTCTTCTTCTTCTTTTTCACCGGTTGTTCCACTTGTGA

Protein Analysis

399

Amino Acids

44.17

Weight (kDa)

9.24

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 44 - 361 5.5e-83 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15800
fragaria_vesca FvH4_6g29810
malus_domestica MD00G1122900.v1.1 MD17G1210800.v1.1
prunus_persica Prupe.3G086200_v2.0.a1
pyrus_communis pycom09g14110 pycom17g21580
rosa_chinensis RchiOBHm_Chr2g0135631
rosa_laevigata RLG00000019473
rosa_multiflora Rmu_sc0002398.1_g000035
rosa_roxburghii Rroxscaffold_2G00109030
rosa_rugosa Rorug02G0325300
rosa_samantha Rh2AG376700 Rh2BG383000 Rh2DG399100
rosa_wichuraiana Rw2G030720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AccB1I GGYRCC 2 cut(s) 422, 589
AccB7I CCANNNNNTGG 1 cut(s) 339
AccBSI CCGCTC 1 cut(s) 479
AccII CGCG 4 cut(s) 176, 258, 398, 902
AclI AACGTT 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 627
AcvI CACGTG 1 cut(s) 1161
AcyI GRCGYC 2 cut(s) 590, 774
AfaI GTAC 5 cut(s) 243, 379, 571, 959, 1066
AfiI CCNNNNNNNGG 2 cut(s) 339, 432
AflIII ACRYGT 3 cut(s) 765, 987, 1160
AgeI ACCGGT 1 cut(s) 1182
AgsI TTSAA 2 cut(s) 272, 1003
AjnI CCWGG 2 cut(s) 880, 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 4 cut(s) 446, 751, 812, 983
AluI AGCT 4 cut(s) 446, 751, 812, 983
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 5 cut(s) 33, 171, 494, 839, 1140
AoxI GGCC 2 cut(s) 105, 1045
ApeKI GCWGC 3 cut(s) 458, 797, 934
ApoI RAATTY 1 cut(s) 627
AsiGI ACCGGT 1 cut(s) 1182
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 3 cut(s) 261, 736, 1022
AsuC2I CCSGG 2 cut(s) 265, 830
AsuHPI GGTGA 3 cut(s) 844, 988, 1172
AsuII TTCGAA 1 cut(s) 22
AvaII GGWCC 3 cut(s) 261, 736, 1022
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BanI GGYRCC 2 cut(s) 422, 589
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BbrPI CACGTG 1 cut(s) 1161
BbsI GAAGAC 5 cut(s) 73, 330, 488, 555, 1157
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 3 cut(s) 470, 784, 921
BccI CCATC 2 cut(s) 846, 1055
BceAI ACGGC 7 cut(s) 92, 120, 264, 471, 577, 589, 622
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 2 cut(s) 882, 1020
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 2 cut(s) 265, 830
BcoDI GTCTC 5 cut(s) 33, 171, 494, 839, 1140
BfmI CTRYAG 1 cut(s) 935
BfoI RGCGCY 1 cut(s) 593
BfuI GTATCC 1 cut(s) 564
BisI GCNGC 4 cut(s) 459, 798, 932, 935
BlsI GCNGC 4 cut(s) 460, 799, 933, 936
Bme1390I CCNGG 4 cut(s) 265, 830, 882, 1020
Bme18I GGWCC 3 cut(s) 261, 736, 1022
BmgT120I GGNCC 3 cut(s) 261, 736, 1022
BmiI GGNNCC 5 cut(s) 262, 424, 591, 738, 1024
BmrFI CCNGG 4 cut(s) 265, 830, 882, 1020
BmsI GCATC 5 cut(s) 217, 738, 775, 859, 866
BoxI GACNNNNGTC 1 cut(s) 1099
BpiI GAAGAC 5 cut(s) 73, 330, 488, 555, 1157
BpmI CTGGAG 1 cut(s) 903
Bpu10I CCTNAGC 1 cut(s) 286
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 1082
BpuMI CCSGG 2 cut(s) 265, 830
BsaAI YACGTR 2 cut(s) 988, 1161
BsaBI GATNNNNATC 2 cut(s) 272, 856
BsaHI GRCGYC 2 cut(s) 590, 774
BsaJI CCNNGG 2 cut(s) 256, 777
BsaWI WCCGGW 2 cut(s) 1091, 1182
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 876, 906
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 432
Bse118I RCCGGY 1 cut(s) 1182
Bse1I ACTGG 1 cut(s) 344
Bse8I GATNNNNATC 2 cut(s) 272, 856
BseBI CCWGG 2 cut(s) 882, 1020
BseDI CCNNGG 2 cut(s) 256, 777
BseGI GGATG 1 cut(s) 857
BseJI GATNNNNATC 2 cut(s) 272, 856
BseLI CCNNNNNNNGG 2 cut(s) 339, 432
BseNI ACTGG 1 cut(s) 344
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 470, 784, 921
Bsh1236I CGCG 4 cut(s) 176, 258, 398, 902
Bsh1285I CGRYCG 2 cut(s) 108, 145
BshFI GGCC 2 cut(s) 107, 1047
BshNI GGYRCC 2 cut(s) 422, 589
BshTI ACCGGT 1 cut(s) 1182
BsiEI CGRYCG 2 cut(s) 108, 145
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 4 cut(s) 264, 830, 1092, 1183
BslFI GGGAC 4 cut(s) 274, 593, 812, 1008
BslI CCNNNNNNNGG 2 cut(s) 339, 432
BsmAI GTCTC 5 cut(s) 33, 171, 494, 839, 1140
BsmBI CGTCTC 4 cut(s) 171, 494, 839, 1140
BsmFI GGGAC 4 cut(s) 274, 593, 812, 1008
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 2 cut(s) 107, 1047
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 720
Bsp19I CCATGG 1 cut(s) 777
BspANI GGCC 2 cut(s) 107, 1047
BspFNI CGCG 4 cut(s) 176, 258, 398, 902
BspLI GGNNCC 5 cut(s) 262, 424, 591, 738, 1024
BspMAI CTGCAG 1 cut(s) 939
BspQI GCTCTTC 1 cut(s) 486
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 2 cut(s) 422, 589
BsrBI CCGCTC 1 cut(s) 479
BsrFI RCCGGY 1 cut(s) 1182
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 1182
BssECI CCNNGG 2 cut(s) 256, 777
BssNI GRCGYC 2 cut(s) 590, 774
BssT1I CCWWGG 1 cut(s) 777
Bst2UI CCWGG 2 cut(s) 882, 1020
Bst4CI ACNGT 4 cut(s) 143, 561, 957, 1119
Bst6I CTCTTC 6 cut(s) 24, 58, 100, 486, 935, 1111
BstACI GRCGYC 2 cut(s) 590, 774
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBAI YACGTR 2 cut(s) 988, 1161
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 814
BstDEI CTNAG 3 cut(s) 76, 286, 923
BstDSI CCRYGG 2 cut(s) 256, 777
BstF5I GGATG 1 cut(s) 857
BstFNI CGCG 4 cut(s) 176, 258, 398, 902
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 1 cut(s) 592
BstMAI GTCTC 5 cut(s) 33, 171, 494, 839, 1140
BstMCI CGRYCG 2 cut(s) 108, 145
BstMWI GCNNNNNNNGC 2 cut(s) 542, 794
BstNI CCWGG 2 cut(s) 882, 1020
BstNSI RCATGY 1 cut(s) 769
BstPAI GACNNNNGTC 1 cut(s) 1099
BstSCI CCNGG 4 cut(s) 263, 828, 880, 1018
BstSFI CTRYAG 1 cut(s) 935
BstUI CGCG 4 cut(s) 176, 258, 398, 902
BstV1I GCAGC 3 cut(s) 470, 784, 921
BstV2I GAAGAC 5 cut(s) 73, 330, 488, 555, 1157
BstZI CGGCCG 1 cut(s) 105
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 2 cut(s) 107, 1047
BtgI CCRYGG 2 cut(s) 256, 777
BtgZI GCGATG 1 cut(s) 882
BtsCI GGATG 1 cut(s) 857
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 814
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 1182
Cfr13I GGNCC 3 cut(s) 261, 736, 1022
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 3 cut(s) 182, 782, 876
CsiI ACCWGGT 1 cut(s) 1018
Csp6I GTAC 5 cut(s) 242, 378, 570, 958, 1065
CspAI ACCGGT 1 cut(s) 1182
CviAII CATG 4 cut(s) 334, 766, 778, 970
CviQI GTAC 5 cut(s) 242, 378, 570, 958, 1065
DdeI CTNAG 3 cut(s) 76, 286, 923
DinI GGCGCC 1 cut(s) 591
DraI TTTAAA 1 cut(s) 1054
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 6 cut(s) 24, 58, 100, 486, 935, 1111
EarI CTCTTC 6 cut(s) 24, 58, 100, 486, 935, 1111
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 777
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 3 cut(s) 261, 736, 1022
Eco52I CGGCCG 1 cut(s) 105
Eco72I CACGTG 1 cut(s) 1161
EcoO109I RGGNCCY 1 cut(s) 1022
EcoRII CCWGG 2 cut(s) 880, 1018
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 777
EgeI GGCGCC 1 cut(s) 591
EheI GGCGCC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 777
Esp3I CGTCTC 4 cut(s) 171, 494, 839, 1140
FaeI CATG 4 cut(s) 337, 769, 781, 973
FaqI GGGAC 4 cut(s) 274, 593, 812, 1008
FatI CATG 4 cut(s) 333, 765, 777, 969
FauI CCCGC 2 cut(s) 251, 463
FauNDI CATATG 2 cut(s) 42, 127
Fnu4HI GCNGC 4 cut(s) 459, 798, 932, 935
FokI GGATG 1 cut(s) 864
Fsp4HI GCNGC 4 cut(s) 459, 798, 932, 935
GlaI GCGC 1 cut(s) 591
GluI GCNGC 4 cut(s) 459, 798, 932, 935
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 593
HaeIII GGCC 2 cut(s) 107, 1047
HapII CCGG 4 cut(s) 264, 830, 1092, 1183
HgaI GACGC 3 cut(s) 182, 782, 876
HhaI GCGC 1 cut(s) 592
Hin1I GRCGYC 2 cut(s) 590, 774
Hin1II CATG 4 cut(s) 337, 769, 781, 973
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 3 cut(s) 520, 919, 1095
HpaII CCGG 4 cut(s) 264, 830, 1092, 1183
HphI GGTGA 3 cut(s) 844, 988, 1172
Hpy166II GTNNAC 4 cut(s) 136, 472, 524, 570
Hpy188I TCNGA 6 cut(s) 122, 532, 679, 844, 918, 1033
Hpy188III TCNNGA 2 cut(s) 170, 803
Hpy8I GTNNAC 4 cut(s) 136, 472, 524, 570
Hpy99I CGWCG 4 cut(s) 359, 512, 776, 892
HpyCH4III ACNGT 4 cut(s) 143, 561, 957, 1119
HpyCH4IV ACGT 5 cut(s) 354, 468, 572, 987, 1160
HpyCH4V TGCA 3 cut(s) 668, 872, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 794
HpyF3I CTNAG 3 cut(s) 76, 286, 923
HpySE526I ACGT 5 cut(s) 354, 468, 572, 987, 1160
Hsp92I GRCGYC 2 cut(s) 590, 774
Hsp92II CATG 4 cut(s) 337, 769, 781, 973
HspAI GCGC 1 cut(s) 590
KasI GGCGCC 1 cut(s) 589
KspI CCGCGG 1 cut(s) 259
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 884
Lsp1109I GCAGC 3 cut(s) 470, 784, 921
LweI GCATC 5 cut(s) 217, 738, 775, 859, 866
MabI ACCWGGT 1 cut(s) 1018
MaeII ACGT 5 cut(s) 354, 468, 572, 987, 1160
MaeIII GTNAC 1 cut(s) 404
MbiI CCGCTC 1 cut(s) 479
MfeI CAATTG 1 cut(s) 690
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 4 cut(s) 384, 627, 690, 700
Mly113I GGCGCC 1 cut(s) 590
MlyI GAGTC 2 cut(s) 529, 1089
MmeI TCCRAC 2 cut(s) 56, 702
MnlI CCTC 6 cut(s) 27, 365, 505, 526, 936, 1114
MseI TTAA 6 cut(s) 192, 345, 648, 1053, 1088, 1128
MslI CAYNNNNRTG 1 cut(s) 974
MspA1I CMGCKG 1 cut(s) 258
MspI CCGG 4 cut(s) 264, 830, 1092, 1183
MspR9I CCNGG 4 cut(s) 265, 830, 882, 1020
MunI CAATTG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 2 cut(s) 882, 1020
MvnI CGCG 4 cut(s) 176, 258, 398, 902
MwoI GCNNNNNNNGC 2 cut(s) 542, 794
NarI GGCGCC 1 cut(s) 590
NciI CCSGG 2 cut(s) 265, 830
NcoI CCATGG 1 cut(s) 777
NdeI CATATG 2 cut(s) 42, 127
NlaIII CATG 4 cut(s) 337, 769, 781, 973
NlaIV GGNNCC 5 cut(s) 262, 424, 591, 738, 1024
NspI RCATGY 1 cut(s) 769
NspV TTCGAA 1 cut(s) 22
PciI ACATGT 1 cut(s) 765
PciSI GCTCTTC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 3 cut(s) 557, 711, 780
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 919
PflMI CCANNNNNTGG 1 cut(s) 339
PinAI ACCGGT 1 cut(s) 1182
PkrI GCNGC 4 cut(s) 460, 799, 933, 936
PleI GAGTC 2 cut(s) 528, 1089
PluTI GGCGCC 1 cut(s) 593
PmaCI CACGTG 1 cut(s) 1161
PmlI CACGTG 1 cut(s) 1161
PpsI GAGTC 2 cut(s) 528, 1089
Ppu21I YACGTR 2 cut(s) 988, 1161
PpuMI RGGWCCY 1 cut(s) 1022
PscI ACATGT 1 cut(s) 765
PshAI GACNNNNGTC 1 cut(s) 1099
Psp1406I AACGTT 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 1022
Psp6I CCWGG 2 cut(s) 880, 1018
PspCI CACGTG 1 cut(s) 1161
PspGI CCWGG 2 cut(s) 880, 1018
PspN4I GGNNCC 5 cut(s) 262, 424, 591, 738, 1024
PspPI GGNCC 3 cut(s) 261, 736, 1022
PspPPI RGGWCCY 1 cut(s) 1022
PstI CTGCAG 1 cut(s) 939
RsaI GTAC 5 cut(s) 243, 379, 571, 959, 1066
RsaNI GTAC 5 cut(s) 242, 378, 570, 958, 1065
RseI CAYNNNNRTG 1 cut(s) 974
SacII CCGCGG 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 6 cut(s) 192, 345, 648, 1053, 1088, 1128
SatI GCNGC 4 cut(s) 459, 798, 932, 935
Sau96I GGNCC 3 cut(s) 261, 736, 1022
SchI GAGTC 2 cut(s) 529, 1089
ScrFI CCNGG 4 cut(s) 265, 830, 882, 1020
SduI GDGCHC 1 cut(s) 720
SexAI ACCWGGT 1 cut(s) 1018
SfaNI GCATC 5 cut(s) 217, 738, 775, 859, 866
SfcI CTRYAG 1 cut(s) 935
SfoI GGCGCC 1 cut(s) 591
Sfr303I CCGCGG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 22
SgrBI CCGCGG 1 cut(s) 259
SinI GGWCC 3 cut(s) 261, 736, 1022
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 1097
SmoI CTYRAG 1 cut(s) 1097
Sse9I AATT 4 cut(s) 384, 627, 690, 700
SspDI GGCGCC 1 cut(s) 589
StyD4I CCNGG 4 cut(s) 263, 828, 880, 1018
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 4 cut(s) 143, 561, 957, 1119
TaiI ACGT 5 cut(s) 357, 471, 575, 990, 1163
TaqI TCGA 9 cut(s) 22, 357, 510, 518, 714, 771, 783, 804, 1013
TaqII GACCGA 2 cut(s) 342, 482
TasI AATT 4 cut(s) 384, 627, 690, 700
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 934
TfiI GAWTC 1 cut(s) 919
Tru1I TTAA 6 cut(s) 192, 345, 648, 1053, 1088, 1128
Tru9I TTAA 6 cut(s) 192, 345, 648, 1053, 1088, 1128
TscAI CASTG 1 cut(s) 543
TseI GCWGC 3 cut(s) 458, 797, 934
TspDTI ATGAA 5 cut(s) 106, 350, 355, 614, 743
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 543
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 3 cut(s) 261, 736, 1022
XapI RAATTY 1 cut(s) 627
XceI RCATGY 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.